Click here to switch to the map view.

The map label for this gene is ycaD [C]

Identifier: 225852144

GI number: 225852144

Start: 635942

End: 637198

Strand: Reverse

Name: ycaD [C]

Synonym: BMEA_A0657

Alternate gene names: 225852144

Gene position: 637198-635942 (Counterclockwise)

Preceding gene: 225852145

Following gene: 225852142

Centisome position: 29.98

GC content: 58.87

Gene sequence:

>1257_bases
ATGGCGGGACAGCTTCTGCCCATAGCCGCGCTGCTGGCAAGCACATTTCTCATGCTGCTCGCAGGCGGCCTTGCCGGTAT
TCTCCTTCCGCTTCGCGGTGGCATGGAAGGCTGGTCCACGACGACAATCGGCTGGATGGGGACAAGCTATTCGCTGGCCT
TCACCATCGGCTGCATTTTCATTCCGCATCTGGTGCGCCGCGTCGGCCATGTGCGTGTCTTTTCGGCGCTTCTGACGCTG
CTGTCCATGGCGCTGCTGTTCCATGCACTGGTGGTCAACCCGGCCGCGTGGATGATTTTTCGCGGCATTACGGGCTTCTC
CCTCGCCGGTTCCTACATGATTATCGAAAGCTGGCTGAACGAGCGCGTGACCAATGAATCGCGCGGCATGATCTTCTCGA
TCTATATGATCATCACCATGGTCGGGCTGCTTCTGGGGCAGTATATCCTACCCTTCGGCAATGCCGCCACGCAGACACTT
TTCATCATCTGCGCCATTATCTATGCCAGCGCGCTTCTGCCCACAGCACTTTCAAGCGCCCAGTCACCCAACCCGCTGAC
ACAGGTTTCGCTGGACCTCAAAGGGCTTTACCGCCGCTCGCCCGCCGCAGTTGTCGGCTCCTTCATCGCAGGCATCGTGG
CAGGCACATGGAATTTCCTTGCCGCCATCTATGGGGAGATGAACGGGCTTTCCACTTTCGGCATCGCCACCATGCTTGCC
TCGGCGATGATCGGCGGCGCAATCTTCCAGTACCCGCTTGGACGCGCTTCCGATTTCGTCGACCGCCGCTATATGATGAT
CCTTGCAGGCGCCATCGGCTTCACCCTGTCGTTCATCATGGTGCTGTTTCACCCGACCTCGCCCTATACGCTCTATGCGA
TGATGTTTCTGTTCGGCTCGGTGGTCTTTCCGATCTATAGCCTGAACGTCGCCCATGCGAACGACTATGCCGATGCCAGC
GAATTCGTAAAGATTTCCGGCGGGCTGCTCATCGTCTATGGGGTTGGCAGCGTGCTTGGGCCAGCAATTTCAGGCCCGCT
GATGGATGTCATCGGCGCGAACGGATTTTTCGTCACCATGGCGATTGCCTATTGCATCTATGGGCTGCACGCCTGGTGGC
GCATCTACCGGCTGGAGCGCCCCGCAATCAGCGACCAGAAGACCGAGTTCAAGTTCCACACGCCCGACGGGCAATCGACA
CCGGAAACCATGCAGCTCGACCCGCGTGCGGAAGGCACATCGGGGCAGGCGCAATAA

Upstream 100 bases:

>100_bases
GGTTCAATTCGTTGTTTTCGTGCGTATCAATCCGCCACTTGTCAAATCACGCCAAAGCGACAAGTAGCTTTTGAATTCCT
GACCCATTGTGGAGTCCGTC

Downstream 100 bases:

>100_bases
GACCCTATTGCGCCTGCGGGGCATTAACCTTGTGCGGCGCCAACGAAAGCTGGTGCTCGCGGTAGATGATAAAGCCGCCG
GCAGCCATCACGATGCCGCT

Product: major facilitator superfamily protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 418; Mature: 417

Protein sequence:

>418_residues
MAGQLLPIAALLASTFLMLLAGGLAGILLPLRGGMEGWSTTTIGWMGTSYSLAFTIGCIFIPHLVRRVGHVRVFSALLTL
LSMALLFHALVVNPAAWMIFRGITGFSLAGSYMIIESWLNERVTNESRGMIFSIYMIITMVGLLLGQYILPFGNAATQTL
FIICAIIYASALLPTALSSAQSPNPLTQVSLDLKGLYRRSPAAVVGSFIAGIVAGTWNFLAAIYGEMNGLSTFGIATMLA
SAMIGGAIFQYPLGRASDFVDRRYMMILAGAIGFTLSFIMVLFHPTSPYTLYAMMFLFGSVVFPIYSLNVAHANDYADAS
EFVKISGGLLIVYGVGSVLGPAISGPLMDVIGANGFFVTMAIAYCIYGLHAWWRIYRLERPAISDQKTEFKFHTPDGQST
PETMQLDPRAEGTSGQAQ

Sequences:

>Translated_418_residues
MAGQLLPIAALLASTFLMLLAGGLAGILLPLRGGMEGWSTTTIGWMGTSYSLAFTIGCIFIPHLVRRVGHVRVFSALLTL
LSMALLFHALVVNPAAWMIFRGITGFSLAGSYMIIESWLNERVTNESRGMIFSIYMIITMVGLLLGQYILPFGNAATQTL
FIICAIIYASALLPTALSSAQSPNPLTQVSLDLKGLYRRSPAAVVGSFIAGIVAGTWNFLAAIYGEMNGLSTFGIATMLA
SAMIGGAIFQYPLGRASDFVDRRYMMILAGAIGFTLSFIMVLFHPTSPYTLYAMMFLFGSVVFPIYSLNVAHANDYADAS
EFVKISGGLLIVYGVGSVLGPAISGPLMDVIGANGFFVTMAIAYCIYGLHAWWRIYRLERPAISDQKTEFKFHTPDGQST
PETMQLDPRAEGTSGQAQ
>Mature_417_residues
AGQLLPIAALLASTFLMLLAGGLAGILLPLRGGMEGWSTTTIGWMGTSYSLAFTIGCIFIPHLVRRVGHVRVFSALLTLL
SMALLFHALVVNPAAWMIFRGITGFSLAGSYMIIESWLNERVTNESRGMIFSIYMIITMVGLLLGQYILPFGNAATQTLF
IICAIIYASALLPTALSSAQSPNPLTQVSLDLKGLYRRSPAAVVGSFIAGIVAGTWNFLAAIYGEMNGLSTFGIATMLAS
AMIGGAIFQYPLGRASDFVDRRYMMILAGAIGFTLSFIMVLFHPTSPYTLYAMMFLFGSVVFPIYSLNVAHANDYADASE
FVKISGGLLIVYGVGSVLGPAISGPLMDVIGANGFFVTMAIAYCIYGLHAWWRIYRLERPAISDQKTEFKFHTPDGQSTP
ETMQLDPRAEGTSGQAQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. YcaD (TC 2.A.1.26) family [H]

Homologues:

Organism=Escherichia coli, GI1787126, Length=346, Percent_Identity=25.1445086705202, Blast_Score=93, Evalue=4e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 45058; Mature: 44927

Theoretical pI: Translated: 8.06; Mature: 8.06

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGQLLPIAALLASTFLMLLAGGLAGILLPLRGGMEGWSTTTIGWMGTSYSLAFTIGCIF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHHH
IPHLVRRVGHVRVFSALLTLLSMALLFHALVVNPAAWMIFRGITGFSLAGSYMIIESWLN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHCCHHHHHHHHHH
ERVTNESRGMIFSIYMIITMVGLLLGQYILPFGNAATQTLFIICAIIYASALLPTALSSA
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
QSPNPLTQVSLDLKGLYRRSPAAVVGSFIAGIVAGTWNFLAAIYGEMNGLSTFGIATMLA
CCCCCHHEEEHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
SAMIGGAIFQYPLGRASDFVDRRYMMILAGAIGFTLSFIMVLFHPTSPYTLYAMMFLFGS
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
VVFPIYSLNVAHANDYADASEFVKISGGLLIVYGVGSVLGPAISGPLMDVIGANGFFVTM
HHHHHHHCEEECCCCCCCHHHHHHHCCCEEEEEECHHHHHHHHCCCHHHHHCCCCHHHHH
AIAYCIYGLHAWWRIYRLERPAISDQKTEFKFHTPDGQSTPETMQLDPRAEGTSGQAQ
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCEEECCCCCCCCCCCC
>Mature Secondary Structure 
AGQLLPIAALLASTFLMLLAGGLAGILLPLRGGMEGWSTTTIGWMGTSYSLAFTIGCIF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHHH
IPHLVRRVGHVRVFSALLTLLSMALLFHALVVNPAAWMIFRGITGFSLAGSYMIIESWLN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHCCHHHHHHHHHH
ERVTNESRGMIFSIYMIITMVGLLLGQYILPFGNAATQTLFIICAIIYASALLPTALSSA
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
QSPNPLTQVSLDLKGLYRRSPAAVVGSFIAGIVAGTWNFLAAIYGEMNGLSTFGIATMLA
CCCCCHHEEEHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
SAMIGGAIFQYPLGRASDFVDRRYMMILAGAIGFTLSFIMVLFHPTSPYTLYAMMFLFGS
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
VVFPIYSLNVAHANDYADASEFVKISGGLLIVYGVGSVLGPAISGPLMDVIGANGFFVTM
HHHHHHHCEEECCCCCCCHHHHHHHCCCEEEEEECHHHHHHHHCCCHHHHHCCCCHHHHH
AIAYCIYGLHAWWRIYRLERPAISDQKTEFKFHTPDGQSTPETMQLDPRAEGTSGQAQ
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]