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The map label for this gene is rfbD [H]

Identifier: 225852056

GI number: 225852056

Start: 539107

End: 539889

Strand: Reverse

Name: rfbD [H]

Synonym: BMEA_A0558

Alternate gene names: 225852056

Gene position: 539889-539107 (Counterclockwise)

Preceding gene: 225852057

Following gene: 225852055

Centisome position: 25.4

GC content: 45.98

Gene sequence:

>783_bases
ATGATATCGTATATGGCTAATGTCTGGAAGGTACGCCACTTCTGGTGGCACCTTTCAATGTCTGATTTACGTGGGCGCTT
CAGGCGGTCCTCCTTGGGAATATTATGGGCAGTTATACAGCCACTAGCGCTCACGCTGCTACTGTCTTTCGTGTTTTCTA
AATTGTTGAATCAAAGTATATCTGCATATGCCCCCTATATTCTATCTGGGATTATTATCTGGGAATACATATCATTTACA
GTGGTTGGTGGCTCAACAGCGCTTGTGCAAGCCGATGCATATATAAAGCAAACCAGAAATCCTCTTGCAATTTACACGCT
TAGGAACACTGTTTCTGGCTTGGTCGTATTATCCGTAGCAAGTATCTCCCTATTCGGGTGGGTACTTATCATGTTTCCTG
AAAACTTCTCGCTTTCATGGTTAGCAATACCAACTTTGCTACCCATCCTTGCTTTGATAGTTTGGCCGCTTGCCACAATC
GTCGGCTACATCGGCGCAAGATTTCGAGATCTGCCGAATGCTCTGGCGCTCGTGTTACAGGCAGCTTGGTTTGTTTCGCC
GGTCTATTTTAAAGAATCGATGTTCAGGCAGGGTGGATTGAATGCATTCGTTGATTATAACCCTATTTACCACGTGATGC
AGATTCTAAGAGCCCCTGTCCTTTATGGGGAATGGCCTACGGCTACCAATTACATTTGGTGCTTAGGTGTGAGCCTCCTC
CTAACCTGCGTGGCAGTAGCTGTGGGGATGCGTGCGGAGAAGAGAGCCATTTTTTACCTATGA

Upstream 100 bases:

>100_bases
GCTTCCCACACATTACTGATGTAGAAATCAGTTTTGTTTGTGATTTGGTCAGGAGTTATTTTTCTAATCATTCCAACCAC
ATTTAGTGAGACGATTTCGT

Downstream 100 bases:

>100_bases
TCCAGCCATCGATTACCCTGTCAAATGTTCATCTGCACTACGCTGCATCAGCGTTCAAAGAACGCTCAGTCAAAACTCTA
GTAAACGCCTTATTGAGTAT

Product: O-antigen export system permease rfbD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MISYMANVWKVRHFWWHLSMSDLRGRFRRSSLGILWAVIQPLALTLLLSFVFSKLLNQSISAYAPYILSGIIIWEYISFT
VVGGSTALVQADAYIKQTRNPLAIYTLRNTVSGLVVLSVASISLFGWVLIMFPENFSLSWLAIPTLLPILALIVWPLATI
VGYIGARFRDLPNALALVLQAAWFVSPVYFKESMFRQGGLNAFVDYNPIYHVMQILRAPVLYGEWPTATNYIWCLGVSLL
LTCVAVAVGMRAEKRAIFYL

Sequences:

>Translated_260_residues
MISYMANVWKVRHFWWHLSMSDLRGRFRRSSLGILWAVIQPLALTLLLSFVFSKLLNQSISAYAPYILSGIIIWEYISFT
VVGGSTALVQADAYIKQTRNPLAIYTLRNTVSGLVVLSVASISLFGWVLIMFPENFSLSWLAIPTLLPILALIVWPLATI
VGYIGARFRDLPNALALVLQAAWFVSPVYFKESMFRQGGLNAFVDYNPIYHVMQILRAPVLYGEWPTATNYIWCLGVSLL
LTCVAVAVGMRAEKRAIFYL
>Mature_260_residues
MISYMANVWKVRHFWWHLSMSDLRGRFRRSSLGILWAVIQPLALTLLLSFVFSKLLNQSISAYAPYILSGIIIWEYISFT
VVGGSTALVQADAYIKQTRNPLAIYTLRNTVSGLVVLSVASISLFGWVLIMFPENFSLSWLAIPTLLPILALIVWPLATI
VGYIGARFRDLPNALALVLQAAWFVSPVYFKESMFRQGGLNAFVDYNPIYHVMQILRAPVLYGEWPTATNYIWCLGVSLL
LTCVAVAVGMRAEKRAIFYL

Specific function: May form an ATP-driven O-antigen export apparatus, in association with rfbE [H]

COG id: COG1682

COG function: function code GM; ABC-type polysaccharide/polyol phosphate export systems, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 29336; Mature: 29336

Theoretical pI: Translated: 9.96; Mature: 9.96

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISYMANVWKVRHFWWHLSMSDLRGRFRRSSLGILWAVIQPLALTLLLSFVFSKLLNQSI
CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SAYAPYILSGIIIWEYISFTVVGGSTALVQADAYIKQTRNPLAIYTLRNTVSGLVVLSVA
HHHHHHHHHHHHHHHHHHHEEECCCHHEEEHHHHHHHCCCCEEEEEEHHHHHHHHHHHHH
SISLFGWVLIMFPENFSLSWLAIPTLLPILALIVWPLATIVGYIGARFRDLPNALALVLQ
HHHHHHHEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAWFVSPVYFKESMFRQGGLNAFVDYNPIYHVMQILRAPVLYGEWPTATNYIWCLGVSLL
HHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHCCHHCCCCCCCCCHHHHHHHHHH
LTCVAVAVGMRAEKRAIFYL
HHHHHHHHCCCCCCCEEECC
>Mature Secondary Structure
MISYMANVWKVRHFWWHLSMSDLRGRFRRSSLGILWAVIQPLALTLLLSFVFSKLLNQSI
CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SAYAPYILSGIIIWEYISFTVVGGSTALVQADAYIKQTRNPLAIYTLRNTVSGLVVLSVA
HHHHHHHHHHHHHHHHHHHEEECCCHHEEEHHHHHHHCCCCEEEEEEHHHHHHHHHHHHH
SISLFGWVLIMFPENFSLSWLAIPTLLPILALIVWPLATIVGYIGARFRDLPNALALVLQ
HHHHHHHEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAWFVSPVYFKESMFRQGGLNAFVDYNPIYHVMQILRAPVLYGEWPTATNYIWCLGVSLL
HHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHCCHHCCCCCCCCCHHHHHHHHHH
LTCVAVAVGMRAEKRAIFYL
HHHHHHHHCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7692217 [H]