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The map label for this gene is fni [H]

Identifier: 222527397

GI number: 222527397

Start: 5191029

End: 5192069

Strand: Reverse

Name: fni [H]

Synonym: Chy400_4188

Alternate gene names: 222527397

Gene position: 5192069-5191029 (Counterclockwise)

Preceding gene: 222527399

Following gene: 222527396

Centisome position: 98.54

GC content: 56.77

Gene sequence:

>1041_bases
ATGCCCGGTGACGATAAAACTGAGTCGCGCAAGATCGATCATATTCGCATTGTGTTACATGAGGATGTGGCTGCCAAGGG
TATCGTTACCGGGTTTGCTGCGTATCGTCTCCCGCACCGTGCCTTGCCTGAGCTTGATCTTAACGAGGTTGATACCCGCA
CAACGTTTCTGGGTAAGCCCATTGCCGCACCGTTGTTGATCAGTTCGATGACCGGTGGTACAGCCAGTGCTGAAAAGATT
AATCTGGCGCTGGCCGAAGCTGCTGAGTATCTCGGTTTGCCGATGGGAGTTGGCTCGCAGCGGGCCGCAGTAATGGATCC
CCGGCTTGCCTCTACCTACCAGGTACGGCGAGTTGCGCCGCATATTCCCTTGCTGGCAAATGTTGGCGCTGTGCAGCTCA
ATTATGGCTTTACTGTTGATCATTGCCGTCGGGCAGTGGAGATGATTGAGGCTGATGCGCTGATTTTGCATCTCAATCCA
CTTCAGGAAGCTGTCCAGCCCGAGGGAGATGTCAATTTTAAAGGACTGTTGGCCAGGATCGAAGAGGTTTGTCGGCGATT
GGAAGTACCGGTTATCGTGAAAGAGGTTGGTAATGGTATCGGTGCCGCTGATGCGATCCGGCTCTACGAGGTAGGGGTGC
GCATTATCGATGTGGCGGGGGCTGGTGGTACCAGTTGGAGTGAAGTTGAACGCTTCCGGCAACCAAACGACACCGGGCGC
CGTGTGGCGAGTGCTTTTGCCGATTGGGGGTTGCCGACAACCGAGTGTATACGTGAGGTGCGCGCCGCGTTACCCGATGT
GACGCTCATTGCTTCAGGTGGCGTGCGGAGTGGGGTGGATGTTGCGAAGGCGATTGCGCTGGGTGCCGATCTGGCCGGTA
CTGCCCGTCCGGCACTTTTCGATGCCATCAATGAGCGGGGAGCTGAGGCGGTGATTGAAGGGTTGGGGGCATTTATCCGC
GAACTGCGGGTGGCTATGTTTTGTAGCGGCTGTGCCAATCTTCAGGCGCTGCGGAACCTGCGCCTGGGTGAGCGCTCGTA
G

Upstream 100 bases:

>100_bases
ACGGCCCGCTTGTTTGACGCTCCTCCTTTTTGTTGGTATGATCGCTCTAAAGGGGAAAAAACAATGGTTTCCTTTCCCCT
CCCTGCAACAGGAGTTTGCT

Downstream 100 bases:

>100_bases
CCTGCGGCGATGGCCGATATATGTATGTTCACCATCTGTTTCTGCGCGATTTCCGTAACTACCGACGCCTTGATCTCGCG
CTAGCACCGGCAACCACACT

Product: isopentenyl pyrophosphate isomerase

Products: NA

Alternate protein names: IPP isomerase; Isopentenyl pyrophosphate isomerase [H]

Number of amino acids: Translated: 346; Mature: 345

Protein sequence:

>346_residues
MPGDDKTESRKIDHIRIVLHEDVAAKGIVTGFAAYRLPHRALPELDLNEVDTRTTFLGKPIAAPLLISSMTGGTASAEKI
NLALAEAAEYLGLPMGVGSQRAAVMDPRLASTYQVRRVAPHIPLLANVGAVQLNYGFTVDHCRRAVEMIEADALILHLNP
LQEAVQPEGDVNFKGLLARIEEVCRRLEVPVIVKEVGNGIGAADAIRLYEVGVRIIDVAGAGGTSWSEVERFRQPNDTGR
RVASAFADWGLPTTECIREVRAALPDVTLIASGGVRSGVDVAKAIALGADLAGTARPALFDAINERGAEAVIEGLGAFIR
ELRVAMFCSGCANLQALRNLRLGERS

Sequences:

>Translated_346_residues
MPGDDKTESRKIDHIRIVLHEDVAAKGIVTGFAAYRLPHRALPELDLNEVDTRTTFLGKPIAAPLLISSMTGGTASAEKI
NLALAEAAEYLGLPMGVGSQRAAVMDPRLASTYQVRRVAPHIPLLANVGAVQLNYGFTVDHCRRAVEMIEADALILHLNP
LQEAVQPEGDVNFKGLLARIEEVCRRLEVPVIVKEVGNGIGAADAIRLYEVGVRIIDVAGAGGTSWSEVERFRQPNDTGR
RVASAFADWGLPTTECIREVRAALPDVTLIASGGVRSGVDVAKAIALGADLAGTARPALFDAINERGAEAVIEGLGAFIR
ELRVAMFCSGCANLQALRNLRLGERS
>Mature_345_residues
PGDDKTESRKIDHIRIVLHEDVAAKGIVTGFAAYRLPHRALPELDLNEVDTRTTFLGKPIAAPLLISSMTGGTASAEKIN
LALAEAAEYLGLPMGVGSQRAAVMDPRLASTYQVRRVAPHIPLLANVGAVQLNYGFTVDHCRRAVEMIEADALILHLNPL
QEAVQPEGDVNFKGLLARIEEVCRRLEVPVIVKEVGNGIGAADAIRLYEVGVRIIDVAGAGGTSWSEVERFRQPNDTGRR
VASAFADWGLPTTECIREVRAALPDVTLIASGGVRSGVDVAKAIALGADLAGTARPALFDAINERGAEAVIEGLGAFIRE
LRVAMFCSGCANLQALRNLRLGERS

Specific function: Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP) [H]

COG id: COG1304

COG function: function code C; L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the IPP isomerase type 2 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000262
- InterPro:   IPR011179 [H]

Pfam domain/function: PF01070 FMN_dh [H]

EC number: =5.3.3.2 [H]

Molecular weight: Translated: 36967; Mature: 36836

Theoretical pI: Translated: 6.00; Mature: 6.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPGDDKTESRKIDHIRIVLHEDVAAKGIVTGFAAYRLPHRALPELDLNEVDTRTTFLGKP
CCCCCCCHHCCCCEEEEEEECCHHHHHHHHHHHHHHCCHHCCCCCCCCHHCHHHHHCCCC
IAAPLLISSMTGGTASAEKINLALAEAAEYLGLPMGVGSQRAAVMDPRLASTYQVRRVAP
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCHHHHHHHHHHCC
HIPLLANVGAVQLNYGFTVDHCRRAVEMIEADALILHLNPLQEAVQPEGDVNFKGLLARI
CCCHHHCCCEEEEECCCCHHHHHHHHHHHHHCEEEEEECHHHHHHCCCCCCCHHHHHHHH
EEVCRRLEVPVIVKEVGNGIGAADAIRLYEVGVRIIDVAGAGGTSWSEVERFRQPNDTGR
HHHHHHCCCCCHHHHHCCCCCHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHCCCCHHHH
RVASAFADWGLPTTECIREVRAALPDVTLIASGGVRSGVDVAKAIALGADLAGTARPALF
HHHHHHHHCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCHHHH
DAINERGAEAVIEGLGAFIRELRVAMFCSGCANLQALRNLRLGERS
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
PGDDKTESRKIDHIRIVLHEDVAAKGIVTGFAAYRLPHRALPELDLNEVDTRTTFLGKP
CCCCCCHHCCCCEEEEEEECCHHHHHHHHHHHHHHCCHHCCCCCCCCHHCHHHHHCCCC
IAAPLLISSMTGGTASAEKINLALAEAAEYLGLPMGVGSQRAAVMDPRLASTYQVRRVAP
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCHHHHHHHHHHCC
HIPLLANVGAVQLNYGFTVDHCRRAVEMIEADALILHLNPLQEAVQPEGDVNFKGLLARI
CCCHHHCCCEEEEECCCCHHHHHHHHHHHHHCEEEEEECHHHHHHCCCCCCCHHHHHHHH
EEVCRRLEVPVIVKEVGNGIGAADAIRLYEVGVRIIDVAGAGGTSWSEVERFRQPNDTGR
HHHHHHCCCCCHHHHHCCCCCHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHCCCCHHHH
RVASAFADWGLPTTECIREVRAALPDVTLIASGGVRSGVDVAKAIALGADLAGTARPALF
HHHHHHHHCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCHHHH
DAINERGAEAVIEGLGAFIRELRVAMFCSGCANLQALRNLRLGERS
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA