Definition | Chloroflexus sp. Y-400-fl chromosome, complete genome. |
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Accession | NC_012032 |
Length | 5,268,950 |
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The map label for this gene is 222527328
Identifier: 222527328
GI number: 222527328
Start: 5095972
End: 5097141
Strand: Reverse
Name: 222527328
Synonym: Chy400_4114
Alternate gene names: NA
Gene position: 5097141-5095972 (Counterclockwise)
Preceding gene: 222527329
Following gene: 222527327
Centisome position: 96.74
GC content: 56.75
Gene sequence:
>1170_bases ATGAGCGTTATATCTTCCCCGGCCTACAAGCGTGCCCTTCAGTTCATTACCCTCATGGGTGTCGTGAGTCTGCTGGCCGA TATGGTCTACGAGGGTGGCCGAAGTCTGAGTGGTCAGTATCTGGCCTTGCTCGGTGCCAGTGGTGCGGTTGTGGGGTTGA CGGCAGGGATTGGCGAGCTGATCGGCTATGGGTTGCGTCTGGTCTTCGGTTATCTCAGCGACCGCACCCGGCGCTACTGG TTGCTGACTATTCTTGGCTATAGTTTGACGGTTATTGCAGTCCCGTTGCTCGCTTTAGCCAATGCGTGGCCTTTGGCTGT TGGTCTGTTGATGGTTGAGCGTTTGAGCAAAGCGTTACGCAGTCCGGCGAAAGATACCCTGATCTCATACGCTGCTGATC GAGTAGGTGCAGGTAAAGGCTTTGGGCTGCACGAAGTGCTGGATCAGATTGGTGCAGTGCTGGCGCCGCTGCTGCTGGCC GGAATCCTGGCATTCAGTGGGAACTTTCAACTGGCGTTTGGGGTATTGATTATTCCTGGCCTGCTCTGCATGATGGTCTT GTTGATGGCACGGATGCGCTTTCCACAGCCTGCCGATTTAGCGCGACAAACCCCGGCAATAACCACAACCGGCTTTTCGC GTCAGTTCTGGTATTACTTGGCCGGCGTTGCCCTCTTTGCGGCGGCCAGTGTTGATTTTGCCCTGGCTGCCTACCATCTA CAGCGCCTGCAAATCGTTCAGCCGGCGGGTATTCCTGCATTGTACGCGCTGGCGATGACGGTTGATGCTGTTGCTGCGTT CGGCTTTGGCTTGCTCTACGACCGGATTGGCCTTGGCGCATTGGTTGGGGTAACCGCTCTGGGAGCTTTGAGCACCCCAC TTCTCTTCAGTACCGGTCTGCTTACCGTTATCATCGGTGTTGTCCTTTGGGGGGCAGTGTTAGGAGCGCAAGAGTCAATC TTGCGCGCTGCGGTAGGCCAATTGGCACCACCTGATCGGCGAGGTGCGGCGTATGGCCTGTTTCACGCCGGTTTTGGTGT GAGCTGGTTTGTCGGCAGCGCTTGTCTTGGTTTGTTGTATGATAGAGCACTACCGGCGCTGATTGGTGTCTCGGCGGCGC TCTACCTGGGTGCGGCGCTGGTGTTGTTCTACGTTGCCCGTCGGCAATGA
Upstream 100 bases:
>100_bases GGAAGACGTTAATAGACGTTAATATCTGTTGCGTTTTTACCTGCTGGTCACATCTTTCTGTCCAGGTCATTGGTACAGGA CATGCGTCGAGAGGTTTGCC
Downstream 100 bases:
>100_bases TGTCGACGATTCGCTACATGGATATTGATAGTTGACCTCGACAGTCGCAGGATGCGATCCCTCCGCCCCGCTGCGCGAGG GATTGCCATTTCGGCAATGA
Product: major facilitator superfamily protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 389; Mature: 388
Protein sequence:
>389_residues MSVISSPAYKRALQFITLMGVVSLLADMVYEGGRSLSGQYLALLGASGAVVGLTAGIGELIGYGLRLVFGYLSDRTRRYW LLTILGYSLTVIAVPLLALANAWPLAVGLLMVERLSKALRSPAKDTLISYAADRVGAGKGFGLHEVLDQIGAVLAPLLLA GILAFSGNFQLAFGVLIIPGLLCMMVLLMARMRFPQPADLARQTPAITTTGFSRQFWYYLAGVALFAAASVDFALAAYHL QRLQIVQPAGIPALYALAMTVDAVAAFGFGLLYDRIGLGALVGVTALGALSTPLLFSTGLLTVIIGVVLWGAVLGAQESI LRAAVGQLAPPDRRGAAYGLFHAGFGVSWFVGSACLGLLYDRALPALIGVSAALYLGAALVLFYVARRQ
Sequences:
>Translated_389_residues MSVISSPAYKRALQFITLMGVVSLLADMVYEGGRSLSGQYLALLGASGAVVGLTAGIGELIGYGLRLVFGYLSDRTRRYW LLTILGYSLTVIAVPLLALANAWPLAVGLLMVERLSKALRSPAKDTLISYAADRVGAGKGFGLHEVLDQIGAVLAPLLLA GILAFSGNFQLAFGVLIIPGLLCMMVLLMARMRFPQPADLARQTPAITTTGFSRQFWYYLAGVALFAAASVDFALAAYHL QRLQIVQPAGIPALYALAMTVDAVAAFGFGLLYDRIGLGALVGVTALGALSTPLLFSTGLLTVIIGVVLWGAVLGAQESI LRAAVGQLAPPDRRGAAYGLFHAGFGVSWFVGSACLGLLYDRALPALIGVSAALYLGAALVLFYVARRQ >Mature_388_residues SVISSPAYKRALQFITLMGVVSLLADMVYEGGRSLSGQYLALLGASGAVVGLTAGIGELIGYGLRLVFGYLSDRTRRYWL LTILGYSLTVIAVPLLALANAWPLAVGLLMVERLSKALRSPAKDTLISYAADRVGAGKGFGLHEVLDQIGAVLAPLLLAG ILAFSGNFQLAFGVLIIPGLLCMMVLLMARMRFPQPADLARQTPAITTTGFSRQFWYYLAGVALFAAASVDFALAAYHLQ RLQIVQPAGIPALYALAMTVDAVAAFGFGLLYDRIGLGALVGVTALGALSTPLLFSTGLLTVIIGVVLWGAVLGAQESIL RAAVGQLAPPDRRGAAYGLFHAGFGVSWFVGSACLGLLYDRALPALIGVSAALYLGAALVLFYVARRQ
Specific function: Unknown
COG id: COG0477
COG function: function code GEPR; Permeases of the major facilitator superfamily
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011701 - InterPro: IPR016196 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 40859; Mature: 40728
Theoretical pI: Translated: 9.81; Mature: 9.81
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVISSPAYKRALQFITLMGVVSLLADMVYEGGRSLSGQYLALLGASGAVVGLTAGIGEL CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHEEECCCCCHHHHHHHHHHH IGYGLRLVFGYLSDRTRRYWLLTILGYSLTVIAVPLLALANAWPLAVGLLMVERLSKALR HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH SPAKDTLISYAADRVGAGKGFGLHEVLDQIGAVLAPLLLAGILAFSGNFQLAFGVLIIPG CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH LLCMMVLLMARMRFPQPADLARQTPAITTTGFSRQFWYYLAGVALFAAASVDFALAAYHL HHHHHHHHHHHCCCCCCHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH QRLQIVQPAGIPALYALAMTVDAVAAFGFGLLYDRIGLGALVGVTALGALSTPLLFSTGL HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LTVIIGVVLWGAVLGAQESILRAAVGQLAPPDRRGAAYGLFHAGFGVSWFVGSACLGLLY HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHH DRALPALIGVSAALYLGAALVLFYVARRQ HHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SVISSPAYKRALQFITLMGVVSLLADMVYEGGRSLSGQYLALLGASGAVVGLTAGIGEL CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHEEECCCCCHHHHHHHHHHH IGYGLRLVFGYLSDRTRRYWLLTILGYSLTVIAVPLLALANAWPLAVGLLMVERLSKALR HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH SPAKDTLISYAADRVGAGKGFGLHEVLDQIGAVLAPLLLAGILAFSGNFQLAFGVLIIPG CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH LLCMMVLLMARMRFPQPADLARQTPAITTTGFSRQFWYYLAGVALFAAASVDFALAAYHL HHHHHHHHHHHCCCCCCHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH QRLQIVQPAGIPALYALAMTVDAVAAFGFGLLYDRIGLGALVGVTALGALSTPLLFSTGL HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LTVIIGVVLWGAVLGAQESILRAAVGQLAPPDRRGAAYGLFHAGFGVSWFVGSACLGLLY HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHH DRALPALIGVSAALYLGAALVLFYVARRQ HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]