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The map label for this gene is xerD [H]

Identifier: 222527321

GI number: 222527321

Start: 5084025

End: 5085176

Strand: Direct

Name: xerD [H]

Synonym: Chy400_4106

Alternate gene names: 222527321

Gene position: 5084025-5085176 (Clockwise)

Preceding gene: 222527320

Following gene: 222527323

Centisome position: 96.49

GC content: 63.11

Gene sequence:

>1152_bases
ATGGATGAGGAGCAGGCGACGTTCAACCTCAGCGATCAACCACTGACCCCGACCACGTCAATCCGTGAGGCCGGAGCGAT
CTGGCTGGCACGGCTGGCCAGTGCCGGCCTCGATGACGACGATGACGACGAACTCGACGAGCGCACTCGTGAACGTCAAC
GCCACCACGCCCGGCCAACGATTGCCAGTTACGAAACTGCGCTGCGCATCTTTGTGCGCTGGGCCGAACGGAACGGACGC
GAGTGTCTGGGCGATTTGCAGGTAGCCGATCTGGTCGCCTACGCTCGTGCTCTGCGCAAACGCAGCTACGACCTCTCACA
GCGGGCTGCGGCTCAGGCTGACAATCGGCGCGAACGACTCTCTGAGCGAACTGTTCACGCCTACGTGCGCCCGCTGTTCG
GCTTTCTGGCCCTTGCCGACTCGCAGGGTGCCATCTCGTTTCGAGTTGCCGCCGCCCGCCCCGAAGTCAGTCGAGTACTG
CCCCGGCTGCCCGATCCGGTCGCACCAACCCCACCTGATCTGCGCCGACTGGTACGCTTTTACGATAAGCCGCAGGGCGA
AGAGCGTGAACGCCAAATGCTGACCCGCTTACGCAACGCGGCTCTCTTGCACCTGCTCTTTTCGAGTGGTGCCCGTATCT
CGGAAGCATTGGGTCTCGATGTCGGTGATGTCGCCCGCGACCGGCGCATCTTGCCGCGGGTGATCGTTCGCGGCAAAGGC
CGCCGCGAGGGAACCCTCTTCATCCGGCGCCACGCCGAACAGGCGCTACAACGCTACCTGTCCGCCCGTAACTGGCCGCC
GGCCCGTGAACCGCTCTTCATCGCCTTCGACCCCCGCACGGGTGGCGGACGCCTGTCGCGTATCAGCGGCTGGCGAATCG
TCACCGGGGCAGCCAACGCTCTCGCCGACCGCCTGGTCTGGGAAGGAAAGGCTGACGAAGCTGAACTATTACGTCAAGTT
ACACCCCACACCTTTCGCCATTTTGTCGGGTATCACCTGCTGAACGAAGGCGTTTCGTTGGCCGAAGTCTCGCAAATCCT
GCGGCACCGCAGCGTCGAAGTCACCCGCAGCTTCTACGCCAGCTACGCCGACGTGCAATTGCAAGAGGTACACGATCAGT
TCAGCGCCGATCCGTGGCCTGATGAAGAGTAG

Upstream 100 bases:

>100_bases
CTTCACGCTCTTCGGCTACTATCGCATCATTGCCGGTGTGCTGATTATCGGCGCAGTAGCGCTGGGCATCCTGTAGACGA
CTGCAATGAGGAATAGACCG

Downstream 100 bases:

>100_bases
AACCTATTTCAAAAACATTTACAAGAAGTTCTCTCATTCATTCCTGACAGACCCTATGATCGTGACGAGTACACAAAACA
TCCCCGTGACCAGGGTGGTC

Product: integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 383; Mature: 383

Protein sequence:

>383_residues
MDEEQATFNLSDQPLTPTTSIREAGAIWLARLASAGLDDDDDDELDERTRERQRHHARPTIASYETALRIFVRWAERNGR
ECLGDLQVADLVAYARALRKRSYDLSQRAAAQADNRRERLSERTVHAYVRPLFGFLALADSQGAISFRVAAARPEVSRVL
PRLPDPVAPTPPDLRRLVRFYDKPQGEERERQMLTRLRNAALLHLLFSSGARISEALGLDVGDVARDRRILPRVIVRGKG
RREGTLFIRRHAEQALQRYLSARNWPPAREPLFIAFDPRTGGGRLSRISGWRIVTGAANALADRLVWEGKADEAELLRQV
TPHTFRHFVGYHLLNEGVSLAEVSQILRHRSVEVTRSFYASYADVQLQEVHDQFSADPWPDEE

Sequences:

>Translated_383_residues
MDEEQATFNLSDQPLTPTTSIREAGAIWLARLASAGLDDDDDDELDERTRERQRHHARPTIASYETALRIFVRWAERNGR
ECLGDLQVADLVAYARALRKRSYDLSQRAAAQADNRRERLSERTVHAYVRPLFGFLALADSQGAISFRVAAARPEVSRVL
PRLPDPVAPTPPDLRRLVRFYDKPQGEERERQMLTRLRNAALLHLLFSSGARISEALGLDVGDVARDRRILPRVIVRGKG
RREGTLFIRRHAEQALQRYLSARNWPPAREPLFIAFDPRTGGGRLSRISGWRIVTGAANALADRLVWEGKADEAELLRQV
TPHTFRHFVGYHLLNEGVSLAEVSQILRHRSVEVTRSFYASYADVQLQEVHDQFSADPWPDEE
>Mature_383_residues
MDEEQATFNLSDQPLTPTTSIREAGAIWLARLASAGLDDDDDDELDERTRERQRHHARPTIASYETALRIFVRWAERNGR
ECLGDLQVADLVAYARALRKRSYDLSQRAAAQADNRRERLSERTVHAYVRPLFGFLALADSQGAISFRVAAARPEVSRVL
PRLPDPVAPTPPDLRRLVRFYDKPQGEERERQMLTRLRNAALLHLLFSSGARISEALGLDVGDVARDRRILPRVIVRGKG
RREGTLFIRRHAEQALQRYLSARNWPPAREPLFIAFDPRTGGGRLSRISGWRIVTGAANALADRLVWEGKADEAELLRQV
TPHTFRHFVGYHLLNEGVSLAEVSQILRHRSVEVTRSFYASYADVQLQEVHDQFSADPWPDEE

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 43580; Mature: 43580

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDEEQATFNLSDQPLTPTTSIREAGAIWLARLASAGLDDDDDDELDERTRERQRHHARPT
CCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCC
IASYETALRIFVRWAERNGRECLGDLQVADLVAYARALRKRSYDLSQRAAAQADNRRERL
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
SERTVHAYVRPLFGFLALADSQGAISFRVAAARPEVSRVLPRLPDPVAPTPPDLRRLVRF
HHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHCCCCCCCCCCHHHHHHHHH
YDKPQGEERERQMLTRLRNAALLHLLFSSGARISEALGLDVGDVARDRRILPRVIVRGKG
HCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCC
RREGTLFIRRHAEQALQRYLSARNWPPAREPLFIAFDPRTGGGRLSRISGWRIVTGAANA
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEHHHHHH
LADRLVWEGKADEAELLRQVTPHTFRHFVGYHLLNEGVSLAEVSQILRHRSVEVTRSFYA
HHHHHHCCCCCCHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
SYADVQLQEVHDQFSADPWPDEE
HHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MDEEQATFNLSDQPLTPTTSIREAGAIWLARLASAGLDDDDDDELDERTRERQRHHARPT
CCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCC
IASYETALRIFVRWAERNGRECLGDLQVADLVAYARALRKRSYDLSQRAAAQADNRRERL
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
SERTVHAYVRPLFGFLALADSQGAISFRVAAARPEVSRVLPRLPDPVAPTPPDLRRLVRF
HHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHCCCCCCCCCCHHHHHHHHH
YDKPQGEERERQMLTRLRNAALLHLLFSSGARISEALGLDVGDVARDRRILPRVIVRGKG
HCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCC
RREGTLFIRRHAEQALQRYLSARNWPPAREPLFIAFDPRTGGGRLSRISGWRIVTGAANA
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEHHHHHH
LADRLVWEGKADEAELLRQVTPHTFRHFVGYHLLNEGVSLAEVSQILRHRSVEVTRSFYA
HHHHHHCCCCCCHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
SYADVQLQEVHDQFSADPWPDEE
HHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]