Click here to switch to the map view.

The map label for this gene is yjcR [C]

Identifier: 222527269

GI number: 222527269

Start: 5006618

End: 5008189

Strand: Direct

Name: yjcR [C]

Synonym: Chy400_4053

Alternate gene names: 222527269

Gene position: 5006618-5008189 (Clockwise)

Preceding gene: 222527268

Following gene: 222527270

Centisome position: 95.02

GC content: 59.73

Gene sequence:

>1572_bases
ATGGAAGACCGTCTACAGCGTGTTGTTCGGCATATCCTGATGATCACTCTCCTGGTCGGGTTGAGTGGGTGCAGCATCAG
CAGCCTGGTTGGCGCCCCTACACCCGAACCATGGACGCCACCACCAACACCGGAACCAACGGTTGTGGTAGTGGAACCAA
CCGCCACGGCAACTGAACCGGTGCAGCGGACTGTTGCAGTCGCCCTGGGAACGTTCGAGGACCGGCGCGAGTTCAGTGGT
CAGGTTACGCCCATCCTGGAACGCGACCTGGCGTTCCGCGAGAGTGGCATTCTCCGCAATCTGTACATTGAAGTAGGTGC
GCAGGTCACAACCGGGCAGCTCCTGGCCGAGATCGATCTGGGTACGCTCGAAGACCGGTTGCGTCAGGCGCAGATTAACG
CCGAACAAGATCGACGGGCAATTGATCAGGCGGTAGCCCGTGCCCAGATCGAGGTGCGGGCCGCCGAAGTCGCACTGGAA
ACAGCACAGGATCGCCTTGCTGAACTGACAACTCCAGCCTCGGCAACCGAGATCGCGGAAGCACGTGCGGCTCTGCAACG
GGCAGAGGCAGCACTGGCACGGACACGCAATGATGCCTCTGCCGTCAAGACGCGCGCCGAACGGGCACTGGCCGACCGGG
TTGCCGAGTTGCAACGGGTGCAGGCTGCCTATGGTCAGGCTCGCGCCCGTCTGGAGGTCGAAGACACGCCGGAGGTACGG
GCATTAGTTGATCGTTTGACGGTTGAGCTTCAGGCGGCTGAAAGTGCAGTAGCGCTGGCCCAGATCGAACTCGACACGGC
TCGTGGCAATGAGATCGCGGCGGTGCAGGCAGCAGAAGCGGATGTAGCGCTGGCCCGCGCCCGCCTGGATCGGCTCCTCA
ACGGTGCGGATCAGTTTGAAATCACGGCGGCTCGCCGGGCAGTAGAACAGGCGCAGATTCAGCTCGATGCCGCACGCCAA
CGTGCGACCCCCGATCCGTTGCTGGTGAAGAGCCTGGCTGCTTCAGAACTCATGATCAAAGAGATCGAGCGTCAGATCGA
AGCGCGCCGTATTTATGCCCCCTTCGACGGGTCAATCACCGCCATTGACGCCCTGGTCGGTTTTCCGGTGCAGGCTGAAA
TGCCGGTCATCCGATTGATGGATAATTCGGGATTACAGATCACCATCAGTGCAGTGAGTAGCACCGATCTTGAGCGGATT
TCAGATGGTACCCCGGTCACGATCAGCTTCGTGCGCTACCCTGGCCGTACCTTTAATGGGGTGATTCGGAAAAGCACGAT
GCTGACCAACCCCCTACAGGCACCAGAGCTACACGTTGCCTACAACGCCGGCGATCTTGCGCTAGCCGTCGGCGATCCGG
CTCTGGTAACGATTGATTTTGGCCGACGCGAAAATGTGCGCTGGCTCCCGATAGAGGCAATCCGTCGCGATGGTGGCACC
CACGTTCTGGTGCCTACTGAACAAGGGCCGCAGCGGGTTGATGTTGAAATCGGTCTGATTGTTGATGGCAAAGCTGAAAT
CATAAGTGGACTGGAAGTGGGTGATCTGGTCATCTTGCCCGCTACCAGTTAA

Upstream 100 bases:

>100_bases
ACGCGATGGTTGCTGCAAGAGGAACTCAGGCCGGTATCGGTGACCACGCAACCACTAACCGGTGTACTGACCACCGTACC
ACAGTAGTACAGGGAATGCT

Downstream 100 bases:

>100_bases
GAAGGAGCCGATGTGATGCTCACCTGGAGCGACATCTGGTCGTATGTGCGGATTATACTACGATGGTGGTGGGTGGCCCT
CCTGGCAGCGGTGATTGCTG

Product: RND family efflux transporter MFP subunit

Products: NA

Alternate protein names: Efflux Transporter RND Family MFP Subunit; RND Family Efflux Transporter MFP Subunit

Number of amino acids: Translated: 523; Mature: 523

Protein sequence:

>523_residues
MEDRLQRVVRHILMITLLVGLSGCSISSLVGAPTPEPWTPPPTPEPTVVVVEPTATATEPVQRTVAVALGTFEDRREFSG
QVTPILERDLAFRESGILRNLYIEVGAQVTTGQLLAEIDLGTLEDRLRQAQINAEQDRRAIDQAVARAQIEVRAAEVALE
TAQDRLAELTTPASATEIAEARAALQRAEAALARTRNDASAVKTRAERALADRVAELQRVQAAYGQARARLEVEDTPEVR
ALVDRLTVELQAAESAVALAQIELDTARGNEIAAVQAAEADVALARARLDRLLNGADQFEITAARRAVEQAQIQLDAARQ
RATPDPLLVKSLAASELMIKEIERQIEARRIYAPFDGSITAIDALVGFPVQAEMPVIRLMDNSGLQITISAVSSTDLERI
SDGTPVTISFVRYPGRTFNGVIRKSTMLTNPLQAPELHVAYNAGDLALAVGDPALVTIDFGRRENVRWLPIEAIRRDGGT
HVLVPTEQGPQRVDVEIGLIVDGKAEIISGLEVGDLVILPATS

Sequences:

>Translated_523_residues
MEDRLQRVVRHILMITLLVGLSGCSISSLVGAPTPEPWTPPPTPEPTVVVVEPTATATEPVQRTVAVALGTFEDRREFSG
QVTPILERDLAFRESGILRNLYIEVGAQVTTGQLLAEIDLGTLEDRLRQAQINAEQDRRAIDQAVARAQIEVRAAEVALE
TAQDRLAELTTPASATEIAEARAALQRAEAALARTRNDASAVKTRAERALADRVAELQRVQAAYGQARARLEVEDTPEVR
ALVDRLTVELQAAESAVALAQIELDTARGNEIAAVQAAEADVALARARLDRLLNGADQFEITAARRAVEQAQIQLDAARQ
RATPDPLLVKSLAASELMIKEIERQIEARRIYAPFDGSITAIDALVGFPVQAEMPVIRLMDNSGLQITISAVSSTDLERI
SDGTPVTISFVRYPGRTFNGVIRKSTMLTNPLQAPELHVAYNAGDLALAVGDPALVTIDFGRRENVRWLPIEAIRRDGGT
HVLVPTEQGPQRVDVEIGLIVDGKAEIISGLEVGDLVILPATS
>Mature_523_residues
MEDRLQRVVRHILMITLLVGLSGCSISSLVGAPTPEPWTPPPTPEPTVVVVEPTATATEPVQRTVAVALGTFEDRREFSG
QVTPILERDLAFRESGILRNLYIEVGAQVTTGQLLAEIDLGTLEDRLRQAQINAEQDRRAIDQAVARAQIEVRAAEVALE
TAQDRLAELTTPASATEIAEARAALQRAEAALARTRNDASAVKTRAERALADRVAELQRVQAAYGQARARLEVEDTPEVR
ALVDRLTVELQAAESAVALAQIELDTARGNEIAAVQAAEADVALARARLDRLLNGADQFEITAARRAVEQAQIQLDAARQ
RATPDPLLVKSLAASELMIKEIERQIEARRIYAPFDGSITAIDALVGFPVQAEMPVIRLMDNSGLQITISAVSSTDLERI
SDGTPVTISFVRYPGRTFNGVIRKSTMLTNPLQAPELHVAYNAGDLALAVGDPALVTIDFGRRENVRWLPIEAIRRDGGT
HVLVPTEQGPQRVDVEIGLIVDGKAEIISGLEVGDLVILPATS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Inner Membrane-Bound [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 56538; Mature: 56538

Theoretical pI: Translated: 4.56; Mature: 4.56

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEDRLQRVVRHILMITLLVGLSGCSISSLVGAPTPEPWTPPPTPEPTVVVVEPTATATEP
CCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCHHH
VQRTVAVALGTFEDRREFSGQVTPILERDLAFRESGILRNLYIEVGAQVTTGQLLAEIDL
HHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHCCCCEEEHEEECCEEECCCEEEEECC
GTLEDRLRQAQINAEQDRRAIDQAVARAQIEVRAAEVALETAQDRLAELTTPASATEIAE
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
ARAALQRAEAALARTRNDASAVKTRAERALADRVAELQRVQAAYGQARARLEVEDTPEVR
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCHHH
ALVDRLTVELQAAESAVALAQIELDTARGNEIAAVQAAEADVALARARLDRLLNGADQFE
HHHHHHHHHHHHHHCEEEEEEEEEECCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCEE
ITAARRAVEQAQIQLDAARQRATPDPLLVKSLAASELMIKEIERQIEARRIYAPFDGSIT
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHH
AIDALVGFPVQAEMPVIRLMDNSGLQITISAVSSTDLERISDGTPVTISFVRYPGRTFNG
HHHHHHCCCCCCCCCEEEEECCCCCEEEEEECCCCCHHHHCCCCCEEEEEEECCCCCHHH
VIRKSTMLTNPLQAPELHVAYNAGDLALAVGDPALVTIDFGRRENVRWLPIEAIRRDGGT
HHHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEEEEECCCCCCCEEEEHHHHHCCCCC
HVLVPTEQGPQRVDVEIGLIVDGKAEIISGLEVGDLVILPATS
EEEEECCCCCCEEEEEEEEEECCHHHHHCCCCCCCEEEEECCC
>Mature Secondary Structure
MEDRLQRVVRHILMITLLVGLSGCSISSLVGAPTPEPWTPPPTPEPTVVVVEPTATATEP
CCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCHHH
VQRTVAVALGTFEDRREFSGQVTPILERDLAFRESGILRNLYIEVGAQVTTGQLLAEIDL
HHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHCCCCEEEHEEECCEEECCCEEEEECC
GTLEDRLRQAQINAEQDRRAIDQAVARAQIEVRAAEVALETAQDRLAELTTPASATEIAE
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
ARAALQRAEAALARTRNDASAVKTRAERALADRVAELQRVQAAYGQARARLEVEDTPEVR
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCHHH
ALVDRLTVELQAAESAVALAQIELDTARGNEIAAVQAAEADVALARARLDRLLNGADQFE
HHHHHHHHHHHHHHCEEEEEEEEEECCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCEE
ITAARRAVEQAQIQLDAARQRATPDPLLVKSLAASELMIKEIERQIEARRIYAPFDGSIT
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHH
AIDALVGFPVQAEMPVIRLMDNSGLQITISAVSSTDLERISDGTPVTISFVRYPGRTFNG
HHHHHHCCCCCCCCCEEEEECCCCCEEEEEECCCCCHHHHCCCCCEEEEEEECCCCCHHH
VIRKSTMLTNPLQAPELHVAYNAGDLALAVGDPALVTIDFGRRENVRWLPIEAIRRDGGT
HHHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEEEEECCCCCCCEEEEHHHHHCCCCC
HVLVPTEQGPQRVDVEIGLIVDGKAEIISGLEVGDLVILPATS
EEEEECCCCCCEEEEEEEEEECCHHHHHCCCCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA