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The map label for this gene is yqxC [H]

Identifier: 222527183

GI number: 222527183

Start: 4917571

End: 4918353

Strand: Reverse

Name: yqxC [H]

Synonym: Chy400_3965

Alternate gene names: 222527183

Gene position: 4918353-4917571 (Counterclockwise)

Preceding gene: 222527184

Following gene: 222527182

Centisome position: 93.35

GC content: 60.54

Gene sequence:

>783_bases
ATGCCCCGTCAGCGCCTCGATCAGGTACTGGTTAGTCGTGGATTGGCTGAAACACGGGCACGGGCGCAGGCATTGATCAT
GGCCGGCCAGGTGCTGGTGAATGGTCAGGTACAGACCAAGGCCGGGACGCTGATCGCTGACGATGCCAGTGTTGAGGTGC
GTACCGGCTTGCCGTATGTCAGTCGTGGTGGTTTTAAACTGGCCCATGCCCTTGATCAATTTGCGCTTGATCCGACAGGC
CTGACCGCGCTGGATGTTGGTGCCTCGACCGGTGGTTTTACCGATGTCCTGCTGCAACGGGGGGCCGGGCGCGTCTTCGC
GGTTGATGTTGGATACGGCATTCTCGATCACCGTTTACGGAATGACCCGCGCGTCGTGGCGCTTGAACGAACGAACATTC
GCCATCTGACGGCGCTGCCGGCCAATACGTTGGCCGACTGTGCCGTGATCGACGTGAGCTTCATCTCGTTGCGCCTGGTT
CTGCCGGCAGTGCAGCGGCTCGTGACGCCGACAGCCTGGATCGTTGCACTGATTAAGCCGCAATTTGAAGCAGGGCCAAA
GCATGTCGGCAAAGGCGGTGTGGTACGTGATCCCGCAGTGCACGCGCAGGTCATTCGCGATATTCTCAGCTTCGCACGCG
ACTGTGGACTCAATCCGGCGGCCCTGACCCGATCCCCGATTACCGGCCCTGCCGGCAATGTTGAATTCCTGGCCCTCTTT
CACCCGGCCCGCCCCACGCTCGATAGCGAACGGGCAATCGCCTCAGTAGTACACACGCATTGA

Upstream 100 bases:

>100_bases
ATCCCCACAACCCACCGCCGGACTGGTTACGGGCCATGGTGGCCGAATTAGAGGAAGAGATCGCCCGGCTGGAACTTGAA
TTGCAGCGGGAAGAGTGAGT

Downstream 100 bases:

>100_bases
TATGGCTCGATAGAGCCAGTGTGCCTGGCGGTCATTGCCAGGTAAAACCTCTTGCCAACCTTCTGCCCAGCTTTCTTCAC
CCGGTTTTTACGCTGAGTGA

Product: hemolysin A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 259

Protein sequence:

>260_residues
MPRQRLDQVLVSRGLAETRARAQALIMAGQVLVNGQVQTKAGTLIADDASVEVRTGLPYVSRGGFKLAHALDQFALDPTG
LTALDVGASTGGFTDVLLQRGAGRVFAVDVGYGILDHRLRNDPRVVALERTNIRHLTALPANTLADCAVIDVSFISLRLV
LPAVQRLVTPTAWIVALIKPQFEAGPKHVGKGGVVRDPAVHAQVIRDILSFARDCGLNPAALTRSPITGPAGNVEFLALF
HPARPTLDSERAIASVVHTH

Sequences:

>Translated_260_residues
MPRQRLDQVLVSRGLAETRARAQALIMAGQVLVNGQVQTKAGTLIADDASVEVRTGLPYVSRGGFKLAHALDQFALDPTG
LTALDVGASTGGFTDVLLQRGAGRVFAVDVGYGILDHRLRNDPRVVALERTNIRHLTALPANTLADCAVIDVSFISLRLV
LPAVQRLVTPTAWIVALIKPQFEAGPKHVGKGGVVRDPAVHAQVIRDILSFARDCGLNPAALTRSPITGPAGNVEFLALF
HPARPTLDSERAIASVVHTH
>Mature_259_residues
PRQRLDQVLVSRGLAETRARAQALIMAGQVLVNGQVQTKAGTLIADDASVEVRTGLPYVSRGGFKLAHALDQFALDPTGL
TALDVGASTGGFTDVLLQRGAGRVFAVDVGYGILDHRLRNDPRVVALERTNIRHLTALPANTLADCAVIDVSFISLRLVL
PAVQRLVTPTAWIVALIKPQFEAGPKHVGKGGVVRDPAVHAQVIRDILSFARDCGLNPAALTRSPITGPAGNVEFLALFH
PARPTLDSERAIASVVHTH

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 27667; Mature: 27536

Theoretical pI: Translated: 10.15; Mature: 10.15

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRQRLDQVLVSRGLAETRARAQALIMAGQVLVNGQVQTKAGTLIADDASVEVRTGLPYV
CCHHHHHHHHHHCCHHHHHHHHHHHHHHCEEEECCEEEECCCEEEECCCCEEEECCCCCC
SRGGFKLAHALDQFALDPTGLTALDVGASTGGFTDVLLQRGAGRVFAVDVGYGILDHRLR
CCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHCCCCCEEEEECCCHHHHHHHC
NDPRVVALERTNIRHLTALPANTLADCAVIDVSFISLRLVLPAVQRLVTPTAWIVALIKP
CCCCEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCC
QFEAGPKHVGKGGVVRDPAVHAQVIRDILSFARDCGLNPAALTRSPITGPAGNVEFLALF
CCCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCEEEEEEE
HPARPTLDSERAIASVVHTH
CCCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure 
PRQRLDQVLVSRGLAETRARAQALIMAGQVLVNGQVQTKAGTLIADDASVEVRTGLPYV
CHHHHHHHHHHCCHHHHHHHHHHHHHHCEEEECCEEEECCCEEEECCCCEEEECCCCCC
SRGGFKLAHALDQFALDPTGLTALDVGASTGGFTDVLLQRGAGRVFAVDVGYGILDHRLR
CCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHCCCCCEEEEECCCHHHHHHHC
NDPRVVALERTNIRHLTALPANTLADCAVIDVSFISLRLVLPAVQRLVTPTAWIVALIKP
CCCCEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCC
QFEAGPKHVGKGGVVRDPAVHAQVIRDILSFARDCGLNPAALTRSPITGPAGNVEFLALF
CCCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCEEEEEEE
HPARPTLDSERAIASVVHTH
CCCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]