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The map label for this gene is ybdK [C]

Identifier: 222527083

GI number: 222527083

Start: 4807492

End: 4808664

Strand: Direct

Name: ybdK [C]

Synonym: Chy400_3862

Alternate gene names: 222527083

Gene position: 4807492-4808664 (Clockwise)

Preceding gene: 222527080

Following gene: 222527084

Centisome position: 91.24

GC content: 54.73

Gene sequence:

>1173_bases
GTGAGCGTCTATAATCCCAATGATGCCGATTTTGCGTTTACGCTTGGGATCGAAGAGGAGTACCAGATTGTTGATCCCGA
AACACGCGAGTTACGCAGTTACATTACGCAAATTCTTGAGCCGGGCCGTACCATTCTACGCGAGCAGATCAAGCCAGAGA
TGCACCAGAGCATCGTTGAGGTAGGCACACGTCCCTGCCGCACGATCAGTGAGGCAAGAGCGGAAATTGTTCGTCTGCGG
AGTGCGATTGCCGGCCTGGCAGCACGTCATAACTTGCGGATTGTCGCTGCCGGTACCCATCCCTTCTCCTCGTGGATGCA
GCAAGAGATCACGCCCGATGAACGCTACCATATGGTCGTGGGCGAGATGCAAGACGCAGCGTTACAACTGCTGATCTTCG
GTATGCACTGCCACATCGGGATGCCAAATAACGAGGTTGCAATTGAGCTGATGAATGTGGCCCGCTACATCTGCCCGCAC
TTACTGGCCCTGAGCACCTCTTCACCGTTCTGGATGGGACGCAATACCGGCTTTAAGTCCTACCGCAGTGTTATCTTCAG
CACCTTCCCGCGCACCGGGATTCCGCCAACCTTCCACTCAGCCAGCGAGTTTGAACGGTACGTTCAATTGCTGGTCAATA
CCGGCTGTATCGATAACGGCAAGAAGATCTGGTGGGATCTCCGCCCGCACCCCTTCTTTGGCACACTCGAATTCCGCGTC
TGCGACATTGCCACGAAAGTCGAAGAGTGTCTGGCCCTTGCCGCAACCATGCAGGCCCTGATCGTGAAGTTCTATACCAT
GTTTGAAGAGAACACGACCTTCCGCGTCTATCGCCGCGCCCTGATCAACGAGAACAAGTGGCGCGCTCAGCGTTGGGGGT
TAGACGGGAAGCTGATCGATTTCGGCAAACGAAAAGAGGTTGAGGCAAAGGCGCTGGTGCACGAAATCGTCGAACTGGTC
GACGATGTGGTTGACATGCTGGGGTCGCGACGTGAGGTAGAATATCTGCTCAAGATCGTCGAAAACGGCACCAGTGCTGA
TCGACAGTTGCGTGTCTTCGCCGAAACCAATGATCTCAAGGCAGTGGTTGATAATTTGATGGTGGAGACGATGGAAGGTG
TGCCGGCGATGGCATTTGAGGCGGATGTGCAAAGCCAGGCAGCGCATAGCTAG

Upstream 100 bases:

>100_bases
AGAGCCTGCCAGCCCCTCACGCAGTCACCCCATATATCGCAAAGACGCGATATAATACAAAGTACCGGAGGTCAGTCTCA
TAACCAGTGAGGAGTGCGCG

Downstream 100 bases:

>100_bases
GCCAGCATACTAGAGAGGATTTCAACATGGACGTTGAATTAACCCCAGAACAGCAGTTTATTCGGCAAACGGTGCGTGAA
TTCGCCGAAAAAGAGATCGC

Product: carboxylate-amine ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 390; Mature: 389

Protein sequence:

>390_residues
MSVYNPNDADFAFTLGIEEEYQIVDPETRELRSYITQILEPGRTILREQIKPEMHQSIVEVGTRPCRTISEARAEIVRLR
SAIAGLAARHNLRIVAAGTHPFSSWMQQEITPDERYHMVVGEMQDAALQLLIFGMHCHIGMPNNEVAIELMNVARYICPH
LLALSTSSPFWMGRNTGFKSYRSVIFSTFPRTGIPPTFHSASEFERYVQLLVNTGCIDNGKKIWWDLRPHPFFGTLEFRV
CDIATKVEECLALAATMQALIVKFYTMFEENTTFRVYRRALINENKWRAQRWGLDGKLIDFGKRKEVEAKALVHEIVELV
DDVVDMLGSRREVEYLLKIVENGTSADRQLRVFAETNDLKAVVDNLMVETMEGVPAMAFEADVQSQAAHS

Sequences:

>Translated_390_residues
MSVYNPNDADFAFTLGIEEEYQIVDPETRELRSYITQILEPGRTILREQIKPEMHQSIVEVGTRPCRTISEARAEIVRLR
SAIAGLAARHNLRIVAAGTHPFSSWMQQEITPDERYHMVVGEMQDAALQLLIFGMHCHIGMPNNEVAIELMNVARYICPH
LLALSTSSPFWMGRNTGFKSYRSVIFSTFPRTGIPPTFHSASEFERYVQLLVNTGCIDNGKKIWWDLRPHPFFGTLEFRV
CDIATKVEECLALAATMQALIVKFYTMFEENTTFRVYRRALINENKWRAQRWGLDGKLIDFGKRKEVEAKALVHEIVELV
DDVVDMLGSRREVEYLLKIVENGTSADRQLRVFAETNDLKAVVDNLMVETMEGVPAMAFEADVQSQAAHS
>Mature_389_residues
SVYNPNDADFAFTLGIEEEYQIVDPETRELRSYITQILEPGRTILREQIKPEMHQSIVEVGTRPCRTISEARAEIVRLRS
AIAGLAARHNLRIVAAGTHPFSSWMQQEITPDERYHMVVGEMQDAALQLLIFGMHCHIGMPNNEVAIELMNVARYICPHL
LALSTSSPFWMGRNTGFKSYRSVIFSTFPRTGIPPTFHSASEFERYVQLLVNTGCIDNGKKIWWDLRPHPFFGTLEFRVC
DIATKVEECLALAATMQALIVKFYTMFEENTTFRVYRRALINENKWRAQRWGLDGKLIDFGKRKEVEAKALVHEIVELVD
DVVDMLGSRREVEYLLKIVENGTSADRQLRVFAETNDLKAVVDNLMVETMEGVPAMAFEADVQSQAAHS

Specific function: ATP-dependent carboxylate-amine ligase

COG id: COG2170

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carboxylate-amine ligase family

Homologues:

Organism=Escherichia coli, GI1786795, Length=344, Percent_Identity=30.5232558139535, Blast_Score=176, Evalue=2e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CAAL_CHLAA (A9WAH5)

Other databases:

- EMBL:   CP000909
- RefSeq:   YP_001637154.1
- ProteinModelPortal:   A9WAH5
- SMR:   A9WAH5
- GeneID:   5825387
- GenomeReviews:   CP000909_GR
- KEGG:   cau:Caur_3581
- HOGENOM:   HBG564677
- OMA:   NWQEFAG
- ProtClustDB:   PRK13515
- HAMAP:   MF_01609
- InterPro:   IPR011793
- InterPro:   IPR006336
- TIGRFAMs:   TIGR02050

Pfam domain/function: PF04107 GCS2

EC number: NA

Molecular weight: Translated: 44493; Mature: 44361

Theoretical pI: Translated: 5.81; Mature: 5.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVYNPNDADFAFTLGIEEEYQIVDPETRELRSYITQILEPGRTILREQIKPEMHQSIVE
CCCCCCCCCCEEEEECCCCCCEECCCCHHHHHHHHHHHHCCCHHHHHHHHCHHHHHHHHH
VGTRPCRTISEARAEIVRLRSAIAGLAARHNLRIVAAGTHPFSSWMQQEITPDERYHMVV
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHCCCCCHHHHHH
GEMQDAALQLLIFGMHCHIGMPNNEVAIELMNVARYICPHLLALSTSSPFWMGRNTGFKS
HHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
YRSVIFSTFPRTGIPPTFHSASEFERYVQLLVNTGCIDNGKKIWWDLRPHPFFGTLEFRV
HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCEEEEEEEH
CDIATKVEECLALAATMQALIVKFYTMFEENTTFRVYRRALINENKWRAQRWGLDGKLID
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHCCCCCCEEC
FGKRKEVEAKALVHEIVELVDDVVDMLGSRREVEYLLKIVENGTSADRQLRVFAETNDLK
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCEEEEEEECCHHH
AVVDNLMVETMEGVPAMAFEADVQSQAAHS
HHHHHHHHHHHCCCCCHHHHHHHHHHCCCC
>Mature Secondary Structure 
SVYNPNDADFAFTLGIEEEYQIVDPETRELRSYITQILEPGRTILREQIKPEMHQSIVE
CCCCCCCCCEEEEECCCCCCEECCCCHHHHHHHHHHHHCCCHHHHHHHHCHHHHHHHHH
VGTRPCRTISEARAEIVRLRSAIAGLAARHNLRIVAAGTHPFSSWMQQEITPDERYHMVV
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHCCCCCHHHHHH
GEMQDAALQLLIFGMHCHIGMPNNEVAIELMNVARYICPHLLALSTSSPFWMGRNTGFKS
HHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
YRSVIFSTFPRTGIPPTFHSASEFERYVQLLVNTGCIDNGKKIWWDLRPHPFFGTLEFRV
HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCEEEEEEEH
CDIATKVEECLALAATMQALIVKFYTMFEENTTFRVYRRALINENKWRAQRWGLDGKLID
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHCCCCCCEEC
FGKRKEVEAKALVHEIVELVDDVVDMLGSRREVEYLLKIVENGTSADRQLRVFAETNDLK
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCEEEEEEECCHHH
AVVDNLMVETMEGVPAMAFEADVQSQAAHS
HHHHHHHHHHHCCCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA