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The map label for this gene is yjcR [C]

Identifier: 222526885

GI number: 222526885

Start: 4567513

End: 4569066

Strand: Reverse

Name: yjcR [C]

Synonym: Chy400_3663

Alternate gene names: 222526885

Gene position: 4569066-4567513 (Counterclockwise)

Preceding gene: 222526886

Following gene: 222526884

Centisome position: 86.72

GC content: 62.68

Gene sequence:

>1554_bases
ATGCGACGCATCATTATCGGAACATTACTGGGTGGGCTGTTCACCATACTCACTGCCTGTGCCGCGCCGGCACCGGCAGC
AACGCCGGTGCCAACGGCAGCACCCGCAGCCCAACCAACGGCGGTGCCCCAACCGACCACCGCCCCGCTGACGATTGAAC
TGCCCAATCAGCCCACCATCAGCCTCGGTGTTACGGCCAGTGGTGAAGTGGTAGCCCGCAGCAGTGCGGAATTAAGCTTC
CGCATTCCCGGTGTGGTTGCCGAGGTCTTCGTGAATGAAGGAGACACTGTTCAGGCGGGTGATCCGCTGGTCGCCCTCGA
TGCCCGCGAGCTAGAGCTACAGGTTGCGCAGGCCGAAGCCAGCCTGGCGCAGGCACGCGCCAATTACGAACGGTTGCTGG
AGGGGGCAACACCTGAAGAGATAGCGGCGGTGCGTGCGCAGGTGGCGCAAGCCCAGGCCGCTTTGCGCCAGGCCCGTGGC
AGCGTTACCGAGGCTGATATTGCTGCGGCTGAAGCGGCGCTGGCCCAAGCCATTGCCCGCCGCAACGATCTGCTCGATGG
GCCGAACAACGCCGAACTCACTGCTGCACGGGCGGCAGTTGAGCAGGCAGAGGCGAATCTGAACATCCAACGCACCAACC
TCTCGGCGGCGAAGAGTAATGCCGAGCTTCAGATGTTGCAGGCCGCCAATGCACTGCGTGATGCGCAACAGGCGTACTCC
GACCTCTACTGGGAAAACCGTGAGCGTGAGCAGCAACTGGCGAAATTTGGCTTAGAGCTGCCGAAAGAGGCGAAAGATGC
CGAAGAGCAACTGCTCCGTGCCGTCGAGTCGGCAGAGGCGCGTTACAAGCAGACGCAATTGGCCTATGAACAGGCCCGCC
AGAACGAGATTGACGGTATTGCGGCGGCTGAAGCCCAGTTGCGTTCAGCGCAGAGCAATCTGCAACGACTGCTCGATGGG
CCAACGGCTGATCTGATCGCAGCGGCTGACGCTGCGGTAGCCCAGGCCCAGGCAACGCTGGAACGTCTGCGTGGCGATCA
GCGAGCCGGTGCGCTGGCCGCGGCTCAGGCCGGCGTGGCCGCAGCCCAGGCCAACCTTGAACGGATCACAGCCCCACCAA
CGGCTCAGAATCTGGCTGCTGCCGAAGCTGCTGTGAAGATCGCCGAGGCAGCGCTGGCGGCGGCGAAGCTCAACCTTGAG
AAGGCAGTCTTGCGGGCGCCATTCGCCGGTGTGGTGGCGCAGGTGAACGTTGATCCCGGTGATCTGGCCGGAACCGGTGC
CTTGCCGGTGGTGCAGATTGTTGACGCCAGCGAGCTGTATGTCGAGGCTGCAATCAGCGATACCGATATTGCGCGGGTGC
GTGAAGGGCAAAAGGTAGAGGTTCGGCTCGATGCCCTGCCCGGCACGGTCTTCACCGGTACGCTTGATTTTGTGGCACCG
GTAGCAAATGCGGTCGGCAATGTGCGCACCTTTACCGTCCGGGTCAAGCTCGACCGCCAGGAAGAGCTGCGAGCCGGGAT
GAGTGTGCGCATCACCATTCTTACCGATAACTAA

Upstream 100 bases:

>100_bases
GACCGGTCGCACCGACGTCGTCACCAACGCCTGCCGGCGAACCATCGGCTGATTAAGGACAGATTTTGAGTGAACCATAC
CTGACAGGAGCCAGTAGACA

Downstream 100 bases:

>100_bases
TATCATTCCACTGCCGCAGCCGGTTTCGCTATCGGCTGCGGCATATTTTCGCAAATTGTGGTATATTGCCGGGTAACACA
ACCTCGTTAGCCGGCTGATG

Product: secretion protein HlyD family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 517; Mature: 517

Protein sequence:

>517_residues
MRRIIIGTLLGGLFTILTACAAPAPAATPVPTAAPAAQPTAVPQPTTAPLTIELPNQPTISLGVTASGEVVARSSAELSF
RIPGVVAEVFVNEGDTVQAGDPLVALDARELELQVAQAEASLAQARANYERLLEGATPEEIAAVRAQVAQAQAALRQARG
SVTEADIAAAEAALAQAIARRNDLLDGPNNAELTAARAAVEQAEANLNIQRTNLSAAKSNAELQMLQAANALRDAQQAYS
DLYWENREREQQLAKFGLELPKEAKDAEEQLLRAVESAEARYKQTQLAYEQARQNEIDGIAAAEAQLRSAQSNLQRLLDG
PTADLIAAADAAVAQAQATLERLRGDQRAGALAAAQAGVAAAQANLERITAPPTAQNLAAAEAAVKIAEAALAAAKLNLE
KAVLRAPFAGVVAQVNVDPGDLAGTGALPVVQIVDASELYVEAAISDTDIARVREGQKVEVRLDALPGTVFTGTLDFVAP
VANAVGNVRTFTVRVKLDRQEELRAGMSVRITILTDN

Sequences:

>Translated_517_residues
MRRIIIGTLLGGLFTILTACAAPAPAATPVPTAAPAAQPTAVPQPTTAPLTIELPNQPTISLGVTASGEVVARSSAELSF
RIPGVVAEVFVNEGDTVQAGDPLVALDARELELQVAQAEASLAQARANYERLLEGATPEEIAAVRAQVAQAQAALRQARG
SVTEADIAAAEAALAQAIARRNDLLDGPNNAELTAARAAVEQAEANLNIQRTNLSAAKSNAELQMLQAANALRDAQQAYS
DLYWENREREQQLAKFGLELPKEAKDAEEQLLRAVESAEARYKQTQLAYEQARQNEIDGIAAAEAQLRSAQSNLQRLLDG
PTADLIAAADAAVAQAQATLERLRGDQRAGALAAAQAGVAAAQANLERITAPPTAQNLAAAEAAVKIAEAALAAAKLNLE
KAVLRAPFAGVVAQVNVDPGDLAGTGALPVVQIVDASELYVEAAISDTDIARVREGQKVEVRLDALPGTVFTGTLDFVAP
VANAVGNVRTFTVRVKLDRQEELRAGMSVRITILTDN
>Mature_517_residues
MRRIIIGTLLGGLFTILTACAAPAPAATPVPTAAPAAQPTAVPQPTTAPLTIELPNQPTISLGVTASGEVVARSSAELSF
RIPGVVAEVFVNEGDTVQAGDPLVALDARELELQVAQAEASLAQARANYERLLEGATPEEIAAVRAQVAQAQAALRQARG
SVTEADIAAAEAALAQAIARRNDLLDGPNNAELTAARAAVEQAEANLNIQRTNLSAAKSNAELQMLQAANALRDAQQAYS
DLYWENREREQQLAKFGLELPKEAKDAEEQLLRAVESAEARYKQTQLAYEQARQNEIDGIAAAEAQLRSAQSNLQRLLDG
PTADLIAAADAAVAQAQATLERLRGDQRAGALAAAQAGVAAAQANLERITAPPTAQNLAAAEAAVKIAEAALAAAKLNLE
KAVLRAPFAGVVAQVNVDPGDLAGTGALPVVQIVDASELYVEAAISDTDIARVREGQKVEVRLDALPGTVFTGTLDFVAP
VANAVGNVRTFTVRVKLDRQEELRAGMSVRITILTDN

Specific function: Unknown

COG id: COG0845

COG function: function code M; Membrane-fusion protein

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0194 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006143
- InterPro:   IPR022936 [H]

Pfam domain/function: PF00529 HlyD [H]

EC number: NA

Molecular weight: Translated: 54005; Mature: 54005

Theoretical pI: Translated: 4.41; Mature: 4.41

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRIIIGTLLGGLFTILTACAAPAPAATPVPTAAPAAQPTAVPQPTTAPLTIELPNQPTI
CCEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCE
SLGVTASGEVVARSSAELSFRIPGVVAEVFVNEGDTVQAGDPLVALDARELELQVAQAEA
EEEECCCCCEEEECCCCEEEECCCCEEHHEECCCCEEECCCCEEEECCHHHHHHHHHHHH
SLAQARANYERLLEGATPEEIAAVRAQVAQAQAALRQARGSVTEADIAAAEAALAQAIAR
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
RNDLLDGPNNAELTAARAAVEQAEANLNIQRTNLSAAKSNAELQMLQAANALRDAQQAYS
HHCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCHHHHCCCHHHHHHHHHHHHHHHHHHH
DLYWENREREQQLAKFGLELPKEAKDAEEQLLRAVESAEARYKQTQLAYEQARQNEIDGI
HHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
AAAEAQLRSAQSNLQRLLDGPTADLIAAADAAVAQAQATLERLRGDQRAGALAAAQAGVA
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHCHHHHHHHHHH
AAQANLERITAPPTAQNLAAAEAAVKIAEAALAAAKLNLEKAVLRAPFAGVVAQVNVDPG
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
DLAGTGALPVVQIVDASELYVEAAISDTDIARVREGQKVEVRLDALPGTVFTGTLDFVAP
CCCCCCCCCEEEEECCHHHEEEECCCCCHHHHHCCCCEEEEEEECCCCEEEECHHHHHHH
VANAVGNVRTFTVRVKLDRQEELRAGMSVRITILTDN
HHHHCCCEEEEEEEEEECCHHHHHCCCEEEEEEEECC
>Mature Secondary Structure
MRRIIIGTLLGGLFTILTACAAPAPAATPVPTAAPAAQPTAVPQPTTAPLTIELPNQPTI
CCEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCE
SLGVTASGEVVARSSAELSFRIPGVVAEVFVNEGDTVQAGDPLVALDARELELQVAQAEA
EEEECCCCCEEEECCCCEEEECCCCEEHHEECCCCEEECCCCEEEECCHHHHHHHHHHHH
SLAQARANYERLLEGATPEEIAAVRAQVAQAQAALRQARGSVTEADIAAAEAALAQAIAR
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
RNDLLDGPNNAELTAARAAVEQAEANLNIQRTNLSAAKSNAELQMLQAANALRDAQQAYS
HHCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCHHHHCCCHHHHHHHHHHHHHHHHHHH
DLYWENREREQQLAKFGLELPKEAKDAEEQLLRAVESAEARYKQTQLAYEQARQNEIDGI
HHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
AAAEAQLRSAQSNLQRLLDGPTADLIAAADAAVAQAQATLERLRGDQRAGALAAAQAGVA
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHCHHHHHHHHHH
AAQANLERITAPPTAQNLAAAEAAVKIAEAALAAAKLNLEKAVLRAPFAGVVAQVNVDPG
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
DLAGTGALPVVQIVDASELYVEAAISDTDIARVREGQKVEVRLDALPGTVFTGTLDFVAP
CCCCCCCCCEEEEECCHHHEEEECCCCCHHHHHCCCCEEEEEEECCCCEEEECHHHHHHH
VANAVGNVRTFTVRVKLDRQEELRAGMSVRITILTDN
HHHHCCCEEEEEEEEEECCHHHHHCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA