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The map label for this gene is yfdE [H]

Identifier: 222526831

GI number: 222526831

Start: 4488827

End: 4490002

Strand: Reverse

Name: yfdE [H]

Synonym: Chy400_3606

Alternate gene names: 222526831

Gene position: 4490002-4488827 (Counterclockwise)

Preceding gene: 222526833

Following gene: 222526828

Centisome position: 85.22

GC content: 57.82

Gene sequence:

>1176_bases
ATGCCAACTGCACTTGCTGATCTCCTGATTCTTGATTTCAGTCGGGTTCTGGCCGGCCCATATGCGACAATGGTTCTCGC
CGATATGGGCGCACGGGTGATCAAGATTGAACAACCGGGTACCGGTGATGAAACCCGCCAGTGGGGACCACCCTTCGCCG
ATAATGGCCTGAGTGCCTATTTCATTGCCGTCAACCGCAACAAACAGAGCATCACCCTCAATCTCAAGCATCCTACCGGC
CAGGCGATTGCCCGTGAACTCGCCCGACGTGCCGACGTGCTGATTGAGAATTTTTTGCCTGGAACAATGGCCCGGATGGG
ATTGGGATACAACGATCTACGTCCGCTCAATCCGCGACTCATTTACTGTAGCATTACCGGCTACGGTCAGTACGGTCCTG
ATGCCGACCGTCCTGGTTACGACACGGTGATTCAGGCCGAAGGCGGGTTGATGAGTATCACCGGTGAACCGGATGGCCCG
CCAATGAAGACCGGCGTTGCCGTTGCGGACATTACTACCGGCCTGTACGCCGCAACCAGCATTCTGGCGGCATTGCACTA
CCGCACCCACAGCGGAGAAGGGCAGTATATCGATCTGTCCCTCTTTGATGTGCAACTCAGTTGGCTGGCAAACGTGGCAT
CAGCCTACCTGGTTTCCGGCAAGCCACCACGTCGCTACGGCAATGCCCACTCCACCATTGTTCCCTATCAACCGTTTGCG
GCTGCTGATGGGTATGTTATGGTGGCGGTGGGGAACGATCAGCAATTCACCCGTTTCTGTCAGGCGCTTAACCACCCCGA
ATGGGCCACCGATGAGCGTTTCGCAACCAACCCGGCCAGAGTAACGAACCGCGAACAGATCATTACGGCGATTGCTGAGG
TCATGGCCGGCGAGTCGGTGGCCTTCTGGATCGAGCGATTGCGAGCGGCTCAGGTGCCGTGTGGCCCGGTCAACGACATT
CCAACGGCTCTGAACAGCCGACAGGCGCAGGCCAGAGGCATGGTTCGCAGTATTGACGGTATCCGGATGGTTGGTCCGGC
GCCGGTATTCAGTGCCACTCCTGCAACCATCCGCTCTGCCCCGCCCGCGCTCGGTGCAGATACCGCAGCGGTATTGGCAG
AGTTGGGCTATTCGGCCGATCAGATTCGTCACTTCTACGATCAGGGGATTGTGTAG

Upstream 100 bases:

>100_bases
ACAACGCTGATACAAAGGATGGTATCATACCTGCCGGCATTGCAATCACAACGCAATGACATACTCGCTGTACCGCTAAC
AGTGCTAAAGGTGCTCGCCT

Downstream 100 bases:

>100_bases
AGAAGAACGGAGGTAGCACAGGCTTCAGTCTGTGCTACCCCGGCTATGTGCGCATATACCCCTGATTACCACAGCGCGAA
CACCCGGCTCGGTCCACCGG

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 391; Mature: 390

Protein sequence:

>391_residues
MPTALADLLILDFSRVLAGPYATMVLADMGARVIKIEQPGTGDETRQWGPPFADNGLSAYFIAVNRNKQSITLNLKHPTG
QAIARELARRADVLIENFLPGTMARMGLGYNDLRPLNPRLIYCSITGYGQYGPDADRPGYDTVIQAEGGLMSITGEPDGP
PMKTGVAVADITTGLYAATSILAALHYRTHSGEGQYIDLSLFDVQLSWLANVASAYLVSGKPPRRYGNAHSTIVPYQPFA
AADGYVMVAVGNDQQFTRFCQALNHPEWATDERFATNPARVTNREQIITAIAEVMAGESVAFWIERLRAAQVPCGPVNDI
PTALNSRQAQARGMVRSIDGIRMVGPAPVFSATPATIRSAPPALGADTAAVLAELGYSADQIRHFYDQGIV

Sequences:

>Translated_391_residues
MPTALADLLILDFSRVLAGPYATMVLADMGARVIKIEQPGTGDETRQWGPPFADNGLSAYFIAVNRNKQSITLNLKHPTG
QAIARELARRADVLIENFLPGTMARMGLGYNDLRPLNPRLIYCSITGYGQYGPDADRPGYDTVIQAEGGLMSITGEPDGP
PMKTGVAVADITTGLYAATSILAALHYRTHSGEGQYIDLSLFDVQLSWLANVASAYLVSGKPPRRYGNAHSTIVPYQPFA
AADGYVMVAVGNDQQFTRFCQALNHPEWATDERFATNPARVTNREQIITAIAEVMAGESVAFWIERLRAAQVPCGPVNDI
PTALNSRQAQARGMVRSIDGIRMVGPAPVFSATPATIRSAPPALGADTAAVLAELGYSADQIRHFYDQGIV
>Mature_390_residues
PTALADLLILDFSRVLAGPYATMVLADMGARVIKIEQPGTGDETRQWGPPFADNGLSAYFIAVNRNKQSITLNLKHPTGQ
AIARELARRADVLIENFLPGTMARMGLGYNDLRPLNPRLIYCSITGYGQYGPDADRPGYDTVIQAEGGLMSITGEPDGPP
MKTGVAVADITTGLYAATSILAALHYRTHSGEGQYIDLSLFDVQLSWLANVASAYLVSGKPPRRYGNAHSTIVPYQPFAA
ADGYVMVAVGNDQQFTRFCQALNHPEWATDERFATNPARVTNREQIITAIAEVMAGESVAFWIERLRAAQVPCGPVNDIP
TALNSRQAQARGMVRSIDGIRMVGPAPVFSATPATIRSAPPALGADTAAVLAELGYSADQIRHFYDQGIV

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=393, Percent_Identity=43.0025445292621, Blast_Score=339, Evalue=3e-93,
Organism=Homo sapiens, GI300863124, Length=419, Percent_Identity=40.8114558472554, Blast_Score=326, Evalue=2e-89,
Organism=Homo sapiens, GI300863126, Length=393, Percent_Identity=37.9134860050891, Blast_Score=278, Evalue=6e-75,
Organism=Homo sapiens, GI13376042, Length=419, Percent_Identity=36.7541766109785, Blast_Score=270, Evalue=1e-72,
Organism=Homo sapiens, GI42794625, Length=396, Percent_Identity=27.7777777777778, Blast_Score=137, Evalue=2e-32,
Organism=Homo sapiens, GI266456254, Length=396, Percent_Identity=27.7777777777778, Blast_Score=137, Evalue=2e-32,
Organism=Homo sapiens, GI266458393, Length=201, Percent_Identity=35.3233830845771, Blast_Score=118, Evalue=8e-27,
Organism=Homo sapiens, GI266458397, Length=259, Percent_Identity=31.6602316602317, Blast_Score=118, Evalue=1e-26,
Organism=Homo sapiens, GI266458395, Length=151, Percent_Identity=36.4238410596026, Blast_Score=98, Evalue=2e-20,
Organism=Homo sapiens, GI42822893, Length=151, Percent_Identity=36.4238410596026, Blast_Score=97, Evalue=3e-20,
Organism=Escherichia coli, GI87082093, Length=338, Percent_Identity=40.5325443786982, Blast_Score=281, Evalue=4e-77,
Organism=Escherichia coli, GI1788717, Length=414, Percent_Identity=33.5748792270531, Blast_Score=187, Evalue=1e-48,
Organism=Escherichia coli, GI1786222, Length=403, Percent_Identity=28.0397022332506, Blast_Score=107, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI115535051, Length=324, Percent_Identity=26.5432098765432, Blast_Score=87, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI32564160, Length=200, Percent_Identity=31, Blast_Score=85, Evalue=5e-17,
Organism=Drosophila melanogaster, GI24648431, Length=394, Percent_Identity=47.2081218274112, Blast_Score=360, Evalue=1e-100,
Organism=Drosophila melanogaster, GI24585488, Length=392, Percent_Identity=28.0612244897959, Blast_Score=122, Evalue=4e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 42111; Mature: 41980

Theoretical pI: Translated: 5.97; Mature: 5.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTALADLLILDFSRVLAGPYATMVLADMGARVIKIEQPGTGDETRQWGPPFADNGLSAY
CCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEE
FIAVNRNKQSITLNLKHPTGQAIARELARRADVLIENFLPGTMARMGLGYNDLRPLNPRL
EEEEECCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCEE
IYCSITGYGQYGPDADRPGYDTVIQAEGGLMSITGEPDGPPMKTGVAVADITTGLYAATS
EEEEEECCCCCCCCCCCCCCCEEEEECCCEEEEECCCCCCCCCCCEEHHHHHHHHHHHHH
ILAALHYRTHSGEGQYIDLSLFDVQLSWLANVASAYLVSGKPPRRYGNAHSTIVPYQPFA
HHHHHHHHCCCCCCCEEEEEEEEHHHHHHHHHHHHHEECCCCCHHCCCCCCEEECCCCCC
AADGYVMVAVGNDQQFTRFCQALNHPEWATDERFATNPARVTNREQIITAIAEVMAGESV
CCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHCCCHH
AFWIERLRAAQVPCGPVNDIPTALNSRQAQARGMVRSIDGIRMVGPAPVFSATPATIRSA
HHHHHHHHHHCCCCCCCCCHHHHHCCHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHCC
PPALGADTAAVLAELGYSADQIRHFYDQGIV
CCCCCCHHHHHHHHHCCCHHHHHHHHHCCCC
>Mature Secondary Structure 
PTALADLLILDFSRVLAGPYATMVLADMGARVIKIEQPGTGDETRQWGPPFADNGLSAY
CHHHHHHHHHHHHHHHCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEE
FIAVNRNKQSITLNLKHPTGQAIARELARRADVLIENFLPGTMARMGLGYNDLRPLNPRL
EEEEECCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCEE
IYCSITGYGQYGPDADRPGYDTVIQAEGGLMSITGEPDGPPMKTGVAVADITTGLYAATS
EEEEEECCCCCCCCCCCCCCCEEEEECCCEEEEECCCCCCCCCCCEEHHHHHHHHHHHHH
ILAALHYRTHSGEGQYIDLSLFDVQLSWLANVASAYLVSGKPPRRYGNAHSTIVPYQPFA
HHHHHHHHCCCCCCCEEEEEEEEHHHHHHHHHHHHHEECCCCCHHCCCCCCEEECCCCCC
AADGYVMVAVGNDQQFTRFCQALNHPEWATDERFATNPARVTNREQIITAIAEVMAGESV
CCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHCCCHH
AFWIERLRAAQVPCGPVNDIPTALNSRQAQARGMVRSIDGIRMVGPAPVFSATPATIRSA
HHHHHHHHHHCCCCCCCCCHHHHHCCHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHCC
PPALGADTAAVLAELGYSADQIRHFYDQGIV
CCCCCCHHHHHHHHHCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]