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The map label for this gene is smpB

Identifier: 222526804

GI number: 222526804

Start: 4454814

End: 4455296

Strand: Reverse

Name: smpB

Synonym: Chy400_3578

Alternate gene names: 222526804

Gene position: 4455296-4454814 (Counterclockwise)

Preceding gene: 222526805

Following gene: 222526803

Centisome position: 84.56

GC content: 55.49

Gene sequence:

>483_bases
GTGACAGCAACAAAACACAAACACCCTGGTGTGGTCGCCGAGAACCGTAAGGCGCGCCACGATTACGATATTGAAGAGAC
GATTGAAGCGGGCATTGTCCTCTCCGGCAGCGAAATTAAATCGGTGCGCGCCGGACGGGTCAACTTGCGCGGCAGTTTTG
CCCGTGTGATCGATGATGAAGTGTTCCTGTATGATGCCCACATTGCGCCTTACGAGCAGTCGGGCAAATACTTCAACCAC
GATCCGATGCGTCCGCGCAAACTGCTGCTGCACCGACGTGAAATCAACCGCCTCAATGGCCTGGTGCGCATGAAGGGGAT
GACCCTGGTGCCGCTGAAGGTCTATTTCAAAGGACGCCGGGCTAAAGTTGAGCTTGGTGTAGCACGTGGGAAGAAGATCT
ACGATAAGCGCGAGGATATTGCCCGGCGCGATGCGGCCCGTGATATTGATCGGGCCTTGAAACGGGCAAGACACGATCTG
TAA

Upstream 100 bases:

>100_bases
TCTCTTCTGGGCTACGATTGGCCTGGGAAGTGCGATTGAATGGCTGATCAACGATCCCCAACCGGTACCGTCGTCAGTTT
CTGTTCTGAGTGAGTGAGAC

Downstream 100 bases:

>100_bases
CAGAGGTTTTGTACTATGTCTGACCGTTTTCAGCGCATGCGTGAGCGTTATCTGACCGGTGAGATTCCGTGGGATCACCC
CGATCCACCGCCTGAGATCA

Product: SsrA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 159

Protein sequence:

>160_residues
MTATKHKHPGVVAENRKARHDYDIEETIEAGIVLSGSEIKSVRAGRVNLRGSFARVIDDEVFLYDAHIAPYEQSGKYFNH
DPMRPRKLLLHRREINRLNGLVRMKGMTLVPLKVYFKGRRAKVELGVARGKKIYDKREDIARRDAARDIDRALKRARHDL

Sequences:

>Translated_160_residues
MTATKHKHPGVVAENRKARHDYDIEETIEAGIVLSGSEIKSVRAGRVNLRGSFARVIDDEVFLYDAHIAPYEQSGKYFNH
DPMRPRKLLLHRREINRLNGLVRMKGMTLVPLKVYFKGRRAKVELGVARGKKIYDKREDIARRDAARDIDRALKRARHDL
>Mature_159_residues
TATKHKHPGVVAENRKARHDYDIEETIEAGIVLSGSEIKSVRAGRVNLRGSFARVIDDEVFLYDAHIAPYEQSGKYFNHD
PMRPRKLLLHRREINRLNGLVRMKGMTLVPLKVYFKGRRAKVELGVARGKKIYDKREDIARRDAARDIDRALKRARHDL

Specific function: Binds specifically to the ssrA RNA (tmRNA) and is required for stable association of ssrA with ribosomes

COG id: COG0691

COG function: function code O; tmRNA-binding protein

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpB family

Homologues:

Organism=Escherichia coli, GI1788973, Length=158, Percent_Identity=44.9367088607595, Blast_Score=134, Evalue=2e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SSRP_CHLAA (A9WJ45)

Other databases:

- EMBL:   CP000909
- RefSeq:   YP_001636893.1
- ProteinModelPortal:   A9WJ45
- SMR:   A9WJ45
- GeneID:   5825119
- GenomeReviews:   CP000909_GR
- KEGG:   cau:Caur_3317
- HOGENOM:   HBG293422
- OMA:   EKYEAGI
- ProtClustDB:   PRK05422
- GO:   GO:0005737
- GO:   GO:0006412
- HAMAP:   MF_00023
- InterPro:   IPR000037
- InterPro:   IPR020081
- Gene3D:   G3DSA:2.40.280.10
- ProDom:   PD004488
- TIGRFAMs:   TIGR00086

Pfam domain/function: PF01668 SmpB; SSF74982 SmpB

EC number: NA

Molecular weight: Translated: 18484; Mature: 18352

Theoretical pI: Translated: 10.85; Mature: 10.85

Prosite motif: PS01317 SSRP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTATKHKHPGVVAENRKARHDYDIEETIEAGIVLSGSEIKSVRAGRVNLRGSFARVIDDE
CCCCCCCCCCCEECCCCCCCCCCHHHHHHCCEEECCHHHHHHHCCEEECCCHHHHHHCCE
VFLYDAHIAPYEQSGKYFNHDPMRPRKLLLHRREINRLNGLVRMKGMTLVPLKVYFKGRR
EEEEECCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCEEEECCCEEEEEEEEECCCC
AKVELGVARGKKIYDKREDIARRDAARDIDRALKRARHDL
EEEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TATKHKHPGVVAENRKARHDYDIEETIEAGIVLSGSEIKSVRAGRVNLRGSFARVIDDE
CCCCCCCCCCEECCCCCCCCCCHHHHHHCCEEECCHHHHHHHCCEEECCCHHHHHHCCE
VFLYDAHIAPYEQSGKYFNHDPMRPRKLLLHRREINRLNGLVRMKGMTLVPLKVYFKGRR
EEEEECCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCEEEECCCEEEEEEEEECCCC
AKVELGVARGKKIYDKREDIARRDAARDIDRALKRARHDL
EEEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA