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The map label for this gene is ykgD [C]

Identifier: 222526624

GI number: 222526624

Start: 4221347

End: 4222336

Strand: Direct

Name: ykgD [C]

Synonym: Chy400_3392

Alternate gene names: 222526624

Gene position: 4221347-4222336 (Clockwise)

Preceding gene: 222526619

Following gene: 222526625

Centisome position: 80.12

GC content: 58.08

Gene sequence:

>990_bases
ATGGATACGCTTACCTACATTCTCAATCTTGCGCGCCTGAAGAGTAGCGTCTATTGTCGCTCTGAACTCGGTTCACCCTG
GGGACTGCACTTTGCCTCACGTTCCTGCGCGGTTTTTCACGTATTGCACCGTGGCAATGGCTTTTTTCGGGTAGCAGGAA
CACCTGAATGGACACCGCTACGTGAAGGCGATCTGTTACTCTTACCCCATGGTCAGGAACATCTCCTGCTAGAGACGCCT
GATACGCATCCGCTGCGCAATCTGGAACTCGATCAGTGGGGGAAATGCGCCCTGATGCGCTGGAGTGATATGCCCAGCGC
GGTGCTGTTGTGCGGCACATTCGATTTCGAGTATGTGCATGCAGCATCGCTATTCCGGTATCTACCAGACGTGATTCACA
TTCCGTACCACGCAGCACGGCCGCTCAATCGGGTCCTGGAGTTGATGGCAGATGAGGCCGAGTCGCAACGACCGGCGAAA
GAGGTTGTCTTGCGCCGCCTGGCCGACATTCTGTTTGTGCAGATCGTGCAGTATTGGGTGGAAATGCATGGCACGCAAGG
TAGTGGCTGGCTGGGTGCCTTCCACGACCCGCTGATCGGCAAGGCGCTGGCACTGATGCATGCACACCCCCAGCAGGACT
GGCAGGTAGCCTCACTGGCACGTGCGCTGGCGTGTTCGCGTTCAACGTTTGCCGCCCGCTTTACGGCGCTGGTCGGTGAG
CCACCGATGGAATATCTGACGCGCTGGCGGATGCAGATAGCGTCGCGCCTGTTGATTGAAGACCCTTCGTTGCGTGTTGG
TGAGGTTGCCGCTCGTGTAGGCTATCGCTCCGAGGCAGCCTTTAGCAAAGCGTTTAAGCGCCTGATCGGCATCGCGCCCA
CCGCGTATCGCAGCGCGGCGGGGCATCGCGTTGAGGCAACTCGACCTGAAGTGCATATCGGTGTTCGTACTACCGAAGCG
GTAGCGACAGGCGCAGGTATGCATACCTGA

Upstream 100 bases:

>100_bases
CAGACCTCCATTGACTGAACCGAATGCTTTGACTATAATCCACACTATCTGGACAGTCTATAGCTATGAATCCGTTTTTC
TTTGCCAATCGTCCGGGATT

Downstream 100 bases:

>100_bases
TGCCTTGAGGTTATTTGGGAAACCCTGAACATCTGGTGCGTGAACCGCCTGAATTGCAGTGATGGGTACGCAACGATGCG
CTCGGATTTTACTTGAGTTA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 329; Mature: 329

Protein sequence:

>329_residues
MDTLTYILNLARLKSSVYCRSELGSPWGLHFASRSCAVFHVLHRGNGFFRVAGTPEWTPLREGDLLLLPHGQEHLLLETP
DTHPLRNLELDQWGKCALMRWSDMPSAVLLCGTFDFEYVHAASLFRYLPDVIHIPYHAARPLNRVLELMADEAESQRPAK
EVVLRRLADILFVQIVQYWVEMHGTQGSGWLGAFHDPLIGKALALMHAHPQQDWQVASLARALACSRSTFAARFTALVGE
PPMEYLTRWRMQIASRLLIEDPSLRVGEVAARVGYRSEAAFSKAFKRLIGIAPTAYRSAAGHRVEATRPEVHIGVRTTEA
VATGAGMHT

Sequences:

>Translated_329_residues
MDTLTYILNLARLKSSVYCRSELGSPWGLHFASRSCAVFHVLHRGNGFFRVAGTPEWTPLREGDLLLLPHGQEHLLLETP
DTHPLRNLELDQWGKCALMRWSDMPSAVLLCGTFDFEYVHAASLFRYLPDVIHIPYHAARPLNRVLELMADEAESQRPAK
EVVLRRLADILFVQIVQYWVEMHGTQGSGWLGAFHDPLIGKALALMHAHPQQDWQVASLARALACSRSTFAARFTALVGE
PPMEYLTRWRMQIASRLLIEDPSLRVGEVAARVGYRSEAAFSKAFKRLIGIAPTAYRSAAGHRVEATRPEVHIGVRTTEA
VATGAGMHT
>Mature_329_residues
MDTLTYILNLARLKSSVYCRSELGSPWGLHFASRSCAVFHVLHRGNGFFRVAGTPEWTPLREGDLLLLPHGQEHLLLETP
DTHPLRNLELDQWGKCALMRWSDMPSAVLLCGTFDFEYVHAASLFRYLPDVIHIPYHAARPLNRVLELMADEAESQRPAK
EVVLRRLADILFVQIVQYWVEMHGTQGSGWLGAFHDPLIGKALALMHAHPQQDWQVASLARALACSRSTFAARFTALVGE
PPMEYLTRWRMQIASRLLIEDPSLRVGEVAARVGYRSEAAFSKAFKRLIGIAPTAYRSAAGHRVEATRPEVHIGVRTTEA
VATGAGMHT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786496, Length=304, Percent_Identity=27.3026315789474, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI226510985, Length=151, Percent_Identity=31.1258278145695, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 36838; Mature: 36838

Theoretical pI: Translated: 8.26; Mature: 8.26

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTLTYILNLARLKSSVYCRSELGSPWGLHFASRSCAVFHVLHRGNGFFRVAGTPEWTPL
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHCCCCEEEECCCCCCCCC
REGDLLLLPHGQEHLLLETPDTHPLRNLELDQWGKCALMRWSDMPSAVLLCGTFDFEYVH
CCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCHHHHH
AASLFRYLPDVIHIPYHAARPLNRVLELMADEAESQRPAKEVVLRRLADILFVQIVQYWV
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
EMHGTQGSGWLGAFHDPLIGKALALMHAHPQQDWQVASLARALACSRSTFAARFTALVGE
HHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCC
PPMEYLTRWRMQIASRLLIEDPSLRVGEVAARVGYRSEAAFSKAFKRLIGIAPTAYRSAA
CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHC
GHRVEATRPEVHIGVRTTEAVATGAGMHT
CCCEECCCCCEEEEEEEHHHHHCCCCCCC
>Mature Secondary Structure
MDTLTYILNLARLKSSVYCRSELGSPWGLHFASRSCAVFHVLHRGNGFFRVAGTPEWTPL
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHCCCCEEEECCCCCCCCC
REGDLLLLPHGQEHLLLETPDTHPLRNLELDQWGKCALMRWSDMPSAVLLCGTFDFEYVH
CCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCHHHHH
AASLFRYLPDVIHIPYHAARPLNRVLELMADEAESQRPAKEVVLRRLADILFVQIVQYWV
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
EMHGTQGSGWLGAFHDPLIGKALALMHAHPQQDWQVASLARALACSRSTFAARFTALVGE
HHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCC
PPMEYLTRWRMQIASRLLIEDPSLRVGEVAARVGYRSEAAFSKAFKRLIGIAPTAYRSAA
CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHC
GHRVEATRPEVHIGVRTTEAVATGAGMHT
CCCEECCCCCEEEEEEEHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1332944 [H]