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The map label for this gene is yohK [H]

Identifier: 222526584

GI number: 222526584

Start: 4175467

End: 4176189

Strand: Reverse

Name: yohK [H]

Synonym: Chy400_3352

Alternate gene names: 222526584

Gene position: 4176189-4175467 (Counterclockwise)

Preceding gene: 222526585

Following gene: 222526577

Centisome position: 79.26

GC content: 56.85

Gene sequence:

>723_bases
ATGGATGAACGAATCTTTTCAATCTGGGTCTACCTCGCTCAAACCCCATTGCTCTGGCTAACGGCAACGATTGCCGTCTA
TCGCCTGATGACAGTAATCAGCCGTCGCCTCGGCTCATCCCCGTTGTTGAATCCAGTTTTGTTGTCAATTGTAACGATAG
TAAGTATCCTGCTACTGACCAATACTCCCTACGCAACCTATTTTGACGGGGCGCAATTCGTTCACTTTCTGCTGGGGCCG
GCAACAGTTGCACTGGCGATCCCGCTCTACGAAGCGGAACGAACGCTACGCAGAATCTTCTGGCCGGCCCTGACCGGGCT
GGTCGTTGGCTCGGCAACCGGGATTGCGGCGGCAGTATTGAGCGGAAGGCTTTTCGGTTTATCAGACGTAACTCTACGTT
CATTAGCTCCCAAATCGATCACAACCCCAATTGCAATGGGCATCGCCGAGCAGTTGGGTGGACTGCCATCGCTGACAGCA
GTGATCGTGATCGTCACCGGGATGGTAGGGGCGCTCCTGGGCTGGGAGTTGCTGGGTCTGGCCGGAGTTCGCGACGATGG
TGAACGTGGCTTCGCACTTGGCCTGGCCTCACACGGCCTCGGTACTGCGCGGTCGTTGCAATTCAGCAGCGAAGCCGGTG
CGCTGGCTGGCCTGGCAATGGGGCTTAATGGCGCAATGACATCATTGCTGGCACCGGTGCTTACGCACTGGCTGGGGCTT
TAG

Upstream 100 bases:

>100_bases
GGCGCCACTGCTGGCAGCGATTGTTGTCTCAACGATGGTAACGCTGTTAGTAACCGGTTTGACCATTCGCCTTCTGCGCA
ATCGAAAGGGTTAGACCATC

Downstream 100 bases:

>100_bases
AAGATTGACAAAGATTTCCATCTGAGCGCAGCGCACAGTATTGAATTGTACCGTCGCTGCGCTCTTGCAGCAAACCTAAT
GGACGGCTTCGGGACAGGCA

Product: LrgB family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MDERIFSIWVYLAQTPLLWLTATIAVYRLMTVISRRLGSSPLLNPVLLSIVTIVSILLLTNTPYATYFDGAQFVHFLLGP
ATVALAIPLYEAERTLRRIFWPALTGLVVGSATGIAAAVLSGRLFGLSDVTLRSLAPKSITTPIAMGIAEQLGGLPSLTA
VIVIVTGMVGALLGWELLGLAGVRDDGERGFALGLASHGLGTARSLQFSSEAGALAGLAMGLNGAMTSLLAPVLTHWLGL

Sequences:

>Translated_240_residues
MDERIFSIWVYLAQTPLLWLTATIAVYRLMTVISRRLGSSPLLNPVLLSIVTIVSILLLTNTPYATYFDGAQFVHFLLGP
ATVALAIPLYEAERTLRRIFWPALTGLVVGSATGIAAAVLSGRLFGLSDVTLRSLAPKSITTPIAMGIAEQLGGLPSLTA
VIVIVTGMVGALLGWELLGLAGVRDDGERGFALGLASHGLGTARSLQFSSEAGALAGLAMGLNGAMTSLLAPVLTHWLGL
>Mature_240_residues
MDERIFSIWVYLAQTPLLWLTATIAVYRLMTVISRRLGSSPLLNPVLLSIVTIVSILLLTNTPYATYFDGAQFVHFLLGP
ATVALAIPLYEAERTLRRIFWPALTGLVVGSATGIAAAVLSGRLFGLSDVTLRSLAPKSITTPIAMGIAEQLGGLPSLTA
VIVIVTGMVGALLGWELLGLAGVRDDGERGFALGLASHGLGTARSLQFSSEAGALAGLAMGLNGAMTSLLAPVLTHWLGL

Specific function: Unknown

COG id: COG1346

COG function: function code M; Putative effector of murein hydrolase

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yohK (E.coli)/ywbG (IPA-22R) (B.subtilis) family [H]

Homologues:

Organism=Escherichia coli, GI1788464, Length=204, Percent_Identity=41.1764705882353, Blast_Score=148, Evalue=2e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005261
- InterPro:   IPR007300 [H]

Pfam domain/function: PF04172 LrgB [H]

EC number: NA

Molecular weight: Translated: 25167; Mature: 25167

Theoretical pI: Translated: 8.93; Mature: 8.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDERIFSIWVYLAQTPLLWLTATIAVYRLMTVISRRLGSSPLLNPVLLSIVTIVSILLLT
CCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
NTPYATYFDGAQFVHFLLGPATVALAIPLYEAERTLRRIFWPALTGLVVGSATGIAAAVL
CCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
SGRLFGLSDVTLRSLAPKSITTPIAMGIAEQLGGLPSLTAVIVIVTGMVGALLGWELLGL
HCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
AGVRDDGERGFALGLASHGLGTARSLQFSSEAGALAGLAMGLNGAMTSLLAPVLTHWLGL
CCCCCCCCCCEEEEHHHCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDERIFSIWVYLAQTPLLWLTATIAVYRLMTVISRRLGSSPLLNPVLLSIVTIVSILLLT
CCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
NTPYATYFDGAQFVHFLLGPATVALAIPLYEAERTLRRIFWPALTGLVVGSATGIAAAVL
CCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
SGRLFGLSDVTLRSLAPKSITTPIAMGIAEQLGGLPSLTAVIVIVTGMVGALLGWELLGL
HCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
AGVRDDGERGFALGLASHGLGTARSLQFSSEAGALAGLAMGLNGAMTSLLAPVLTHWLGL
CCCCCCCCCCEEEEHHHCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503; 2575702 [H]