| Definition | Chloroflexus sp. Y-400-fl chromosome, complete genome. |
|---|---|
| Accession | NC_012032 |
| Length | 5,268,950 |
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The map label for this gene is ygcB [C]
Identifier: 222526427
GI number: 222526427
Start: 3952535
End: 3954889
Strand: Direct
Name: ygcB [C]
Synonym: Chy400_3194
Alternate gene names: 222526427
Gene position: 3952535-3954889 (Clockwise)
Preceding gene: 222526426
Following gene: 222526428
Centisome position: 75.02
GC content: 56.6
Gene sequence:
>2355_bases ATGAAGCCTTTGCCATGGCCTGATTGGCAGGAAGATCTGTTGGCCAAGAGTCAGCAGTACGGCGGAGAGACATTAGCCAG TCATACGTGGGATGTTCTCTGCCGACTGGCCGATCTCTATCGGTTGCGACCGAACCTCGCAGACCTGGCAGGCGGGGTGC GCCTGTGGCATTGCCTGTACTGGGCCACCTTTCTCCACGATTTCGGGAAGGCGGCGGCAGGTTTTCAGCGACGGTTGCGT GGTGGCCCGGCATGGTCGCATCGTCACGAAGTGCTCTCGCTGGCCTTTGTCGATGCGATTGCGCATGATCTGAATGAGTT AGAACAGCGCTGGGTCGTAGCGGCGATTGTGTCGCACCACCGTGATGCACCGGAAATTCGTGAACTGTACCCTGCCGGGT TGCGCAAAGATCCGCTAAGCGATCTTTGCGCTGAACTGCAACCGGCTACTGCTGATCATCTGCATCGCTGGCTTGGCGAA TGCGCGAATCCCTGGCGTATCGAGCTGGGGATGGCGGATGTGGTTGCGGAAATCAGCCCGCAATCACATCCCATTGATGC CAGACGCATCCGTTACTGGCTATCGGTCTATCACCAGTGGGTAGATATATTGACTGCTGCGGGCACAGCAACCACTGCCC GTATTCCCGGTATTTTGTTGCGCGGCCTGATCACCACTGCCGATCACATGGCGTCGGCGCATCTCCAGCGGATACCGGAA CCGATACGCCACTCGTGGCAAGCAGTTATTCCTGCCGGACGGGAAACATATTCTCATCAGGTTGCAAGTGCCGGTGCGAG TGCGCAGCACGTGTTGTTGATGGCGCCAACCGGTAGTGGCAAGACCGAGGCTGCTTTGGCCTGGGCATTGGGTGATGGCA GTAACCCACCGGCGCGTATCTTCTACACACTTCCTTATCAGGCCAGTATGAACGCAATGTACGACCGACTATGCGGACTC TTCGGGAATAATGTTGTTGGTCTTCAGCACGGTCGAGCTGCCCAGGCACTCTACGCCCGTTTCCGGGATGGCGAGGAATG GTCTGCAACGACGGTGCGCAAGGTACAGTGGGAGAAGAATCTCAACCTCTTACATGCCCGTCCCCTCAAAGTACTCAGTC CCTACCAACTGCTCAAAGCTCTCTTTCAACTGCGCGGCTTTGAGGCCATGCTGACCGACTATGCACGGGCGGGTTTCATC TTCGACGAGATTCACGCCTATGAACCAGAACGACTGGCCCTTATCACCGGCTTGATGCGCTATTTGCGCCGGCATGTTGC GGCCCGCTTCTTCGTGATGTCGGCTACCTTCCCGACTCTCATTCTCGAACAGCTCAGTGATGTGCTGGATACGCCAACTA TCATTCAGGCCACACCAGACATCTTTGCCCGCTTCCGTCGTCATCAGTTGTACCTGCGTGATGGCGAGCTGACCGATCCT GCAATTATCACCGAGATTGTCACCGCAGTGCGTGATGGGAAACAGGTTCTGGTCTGTGTCAATACGGTCGCACGGGCGCA GATGGTGCGTGATCTGCTAATGCAGGCTGGTTTGAGCGACGAGCAACTCATCCTGATCCACAGTCGCTTCACCTATGGAG ATCGCAATCGGCTGGAGCAGACAATCGTTGAGCGCTGTCGCAGCGATAGCGCCCGGCGGCCACCGTTAGCGCTAGTGGCC ACCCAGGTGGTCGAAGTTAGCCTCGACATCGATTTGGACACTCTCTACAGTGATCCGGCGCCACTGGAAGCCCTCTTGCA ACGCTTCGGGCGGGTTAATCGACGGGCAGCGAAAGGAATCTGTCCCGTCTACATCTTCCGTCAGCCCAACGATGGCCAGG GAGTTTATGGTCGCCATCGTGATCCCGAACAGGCCGGTCACATCGTGCGGGTCACGCTGGCCGAACTCGAACGTCATCAT GGTGACATTGTCGATGAGTCCGCAGTACAGACCTGGCTGGATACCATCTATGCCGACCCATTGTTGCGTGAGCAATGGTT GACAGCGTATCAGAACATAAGCCGGCAAGTTGAACAGATCATCAACGGCCTCTGTCCGTTCCAGAGCGATGCCCAGCGTG AAGATGAATTCGAGCAGATGTTTGACGGTGTGGACGTGGTGCCGGCCTGCTTCGAGCGCGACTATGTCAGTCTGCTGGTC GAAGAGCGCTTTATCGAGGCGAATGATTATCTGGTCAGCATTAGCAAACAGCGGTTCGCCATCTTACGCAGTCAGGGTAA GGTGCGACCTGCGGAAGAGACCGGTCAGCGACGAGTCTGGGTTGTGCAAACGCCCTACGACTCGCGTAATGGTCTCTCAT TTGGCGATACGGTCATTGATCCAGATTGGAGTTAA
Upstream 100 bases:
>100_bases TTTGGTCAGCAATCGGCAACATACTGGAGTGATCCAACAGCACCGGTTGTTGATGGATTGCCACTCGGTTTGTGGTTTCA TACCTTTGTGGGAGCAGACG
Downstream 100 bases:
>100_bases GTATGACACTTACCGTACATCACCTCATCTTCACCGCGACGGCGGAAACCCCGGTTGTCCTGGCGGCGCAAAGTGGGCCA GCGGTACGCGGTGCGGTTTC
Product: CRISPR-associated helicase Cas3
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 784; Mature: 784
Protein sequence:
>784_residues MKPLPWPDWQEDLLAKSQQYGGETLASHTWDVLCRLADLYRLRPNLADLAGGVRLWHCLYWATFLHDFGKAAAGFQRRLR GGPAWSHRHEVLSLAFVDAIAHDLNELEQRWVVAAIVSHHRDAPEIRELYPAGLRKDPLSDLCAELQPATADHLHRWLGE CANPWRIELGMADVVAEISPQSHPIDARRIRYWLSVYHQWVDILTAAGTATTARIPGILLRGLITTADHMASAHLQRIPE PIRHSWQAVIPAGRETYSHQVASAGASAQHVLLMAPTGSGKTEAALAWALGDGSNPPARIFYTLPYQASMNAMYDRLCGL FGNNVVGLQHGRAAQALYARFRDGEEWSATTVRKVQWEKNLNLLHARPLKVLSPYQLLKALFQLRGFEAMLTDYARAGFI FDEIHAYEPERLALITGLMRYLRRHVAARFFVMSATFPTLILEQLSDVLDTPTIIQATPDIFARFRRHQLYLRDGELTDP AIITEIVTAVRDGKQVLVCVNTVARAQMVRDLLMQAGLSDEQLILIHSRFTYGDRNRLEQTIVERCRSDSARRPPLALVA TQVVEVSLDIDLDTLYSDPAPLEALLQRFGRVNRRAAKGICPVYIFRQPNDGQGVYGRHRDPEQAGHIVRVTLAELERHH GDIVDESAVQTWLDTIYADPLLREQWLTAYQNISRQVEQIINGLCPFQSDAQREDEFEQMFDGVDVVPACFERDYVSLLV EERFIEANDYLVSISKQRFAILRSQGKVRPAEETGQRRVWVVQTPYDSRNGLSFGDTVIDPDWS
Sequences:
>Translated_784_residues MKPLPWPDWQEDLLAKSQQYGGETLASHTWDVLCRLADLYRLRPNLADLAGGVRLWHCLYWATFLHDFGKAAAGFQRRLR GGPAWSHRHEVLSLAFVDAIAHDLNELEQRWVVAAIVSHHRDAPEIRELYPAGLRKDPLSDLCAELQPATADHLHRWLGE CANPWRIELGMADVVAEISPQSHPIDARRIRYWLSVYHQWVDILTAAGTATTARIPGILLRGLITTADHMASAHLQRIPE PIRHSWQAVIPAGRETYSHQVASAGASAQHVLLMAPTGSGKTEAALAWALGDGSNPPARIFYTLPYQASMNAMYDRLCGL FGNNVVGLQHGRAAQALYARFRDGEEWSATTVRKVQWEKNLNLLHARPLKVLSPYQLLKALFQLRGFEAMLTDYARAGFI FDEIHAYEPERLALITGLMRYLRRHVAARFFVMSATFPTLILEQLSDVLDTPTIIQATPDIFARFRRHQLYLRDGELTDP AIITEIVTAVRDGKQVLVCVNTVARAQMVRDLLMQAGLSDEQLILIHSRFTYGDRNRLEQTIVERCRSDSARRPPLALVA TQVVEVSLDIDLDTLYSDPAPLEALLQRFGRVNRRAAKGICPVYIFRQPNDGQGVYGRHRDPEQAGHIVRVTLAELERHH GDIVDESAVQTWLDTIYADPLLREQWLTAYQNISRQVEQIINGLCPFQSDAQREDEFEQMFDGVDVVPACFERDYVSLLV EERFIEANDYLVSISKQRFAILRSQGKVRPAEETGQRRVWVVQTPYDSRNGLSFGDTVIDPDWS >Mature_784_residues MKPLPWPDWQEDLLAKSQQYGGETLASHTWDVLCRLADLYRLRPNLADLAGGVRLWHCLYWATFLHDFGKAAAGFQRRLR GGPAWSHRHEVLSLAFVDAIAHDLNELEQRWVVAAIVSHHRDAPEIRELYPAGLRKDPLSDLCAELQPATADHLHRWLGE CANPWRIELGMADVVAEISPQSHPIDARRIRYWLSVYHQWVDILTAAGTATTARIPGILLRGLITTADHMASAHLQRIPE PIRHSWQAVIPAGRETYSHQVASAGASAQHVLLMAPTGSGKTEAALAWALGDGSNPPARIFYTLPYQASMNAMYDRLCGL FGNNVVGLQHGRAAQALYARFRDGEEWSATTVRKVQWEKNLNLLHARPLKVLSPYQLLKALFQLRGFEAMLTDYARAGFI FDEIHAYEPERLALITGLMRYLRRHVAARFFVMSATFPTLILEQLSDVLDTPTIIQATPDIFARFRRHQLYLRDGELTDP AIITEIVTAVRDGKQVLVCVNTVARAQMVRDLLMQAGLSDEQLILIHSRFTYGDRNRLEQTIVERCRSDSARRPPLALVA TQVVEVSLDIDLDTLYSDPAPLEALLQRFGRVNRRAAKGICPVYIFRQPNDGQGVYGRHRDPEQAGHIVRVTLAELERHH GDIVDESAVQTWLDTIYADPLLREQWLTAYQNISRQVEQIINGLCPFQSDAQREDEFEQMFDGVDVVPACFERDYVSLLV EERFIEANDYLVSISKQRFAILRSQGKVRPAEETGQRRVWVVQTPYDSRNGLSFGDTVIDPDWS
Specific function: Unknown
COG id: COG1203
COG function: function code R; Predicted helicases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI1789119, Length=475, Percent_Identity=28.6315789473684, Blast_Score=121, Evalue=1e-28,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR011545 - InterPro: IPR001650 - InterPro: IPR006474 - InterPro: IPR014021 [H]
Pfam domain/function: PF00270 DEAD [H]
EC number: NA
Molecular weight: Translated: 88822; Mature: 88822
Theoretical pI: Translated: 6.60; Mature: 6.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPLPWPDWQEDLLAKSQQYGGETLASHTWDVLCRLADLYRLRPNLADLAGGVRLWHCLY CCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH WATFLHDFGKAAAGFQRRLRGGPAWSHRHEVLSLAFVDAIAHDLNELEQRWVVAAIVSHH HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC RDAPEIRELYPAGLRKDPLSDLCAELQPATADHLHRWLGECANPWRIELGMADVVAEISP CCCHHHHHHCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHCCCCCEEECCHHHHHHHCCC QSHPIDARRIRYWLSVYHQWVDILTAAGTATTARIPGILLRGLITTADHMASAHLQRIPE CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH PIRHSWQAVIPAGRETYSHQVASAGASAQHVLLMAPTGSGKTEAALAWALGDGSNPPARI HHHHCHHHHCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCEEEEEECCCCCCCCEE FYTLPYQASMNAMYDRLCGLFGNNVVGLQHGRAAQALYARFRDGEEWSATTVRKVQWEKN EEECCCHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCC LNLLHARPLKVLSPYQLLKALFQLRGFEAMLTDYARAGFIFDEIHAYEPERLALITGLMR CCEEECCCHHHCCHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHH YLRRHVAARFFVMSATFPTLILEQLSDVLDTPTIIQATPDIFARFRRHQLYLRDGELTDP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHEEEEECCCCCCH AIITEIVTAVRDGKQVLVCVNTVARAQMVRDLLMQAGLSDEQLILIHSRFTYGDRNRLEQ HHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHH TIVERCRSDSARRPPLALVATQVVEVSLDIDLDTLYSDPAPLEALLQRFGRVNRRAAKGI HHHHHHHCCCCCCCCHHHHHHHHHHEEEECCHHHHCCCCCCHHHHHHHHHHHHHHHHCCC CPVYIFRQPNDGQGVYGRHRDPEQAGHIVRVTLAELERHHGDIVDESAVQTWLDTIYADP CEEEEEECCCCCCCCCCCCCCHHHCCCEEEEEHHHHHHHCCCCCCHHHHHHHHHHHHHCH LLREQWLTAYQNISRQVEQIINGLCPFQSDAQREDEFEQMFDGVDVVPACFERDYVSLLV HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH EERFIEANDYLVSISKQRFAILRSQGKVRPAEETGQRRVWVVQTPYDSRNGLSFGDTVID HHHHHCCCCEEEEEHHHHHHHHHHCCCCCCHHHCCCCEEEEEECCCCCCCCCCCCCCCCC PDWS CCCC >Mature Secondary Structure MKPLPWPDWQEDLLAKSQQYGGETLASHTWDVLCRLADLYRLRPNLADLAGGVRLWHCLY CCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH WATFLHDFGKAAAGFQRRLRGGPAWSHRHEVLSLAFVDAIAHDLNELEQRWVVAAIVSHH HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC RDAPEIRELYPAGLRKDPLSDLCAELQPATADHLHRWLGECANPWRIELGMADVVAEISP CCCHHHHHHCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHCCCCCEEECCHHHHHHHCCC QSHPIDARRIRYWLSVYHQWVDILTAAGTATTARIPGILLRGLITTADHMASAHLQRIPE CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH PIRHSWQAVIPAGRETYSHQVASAGASAQHVLLMAPTGSGKTEAALAWALGDGSNPPARI HHHHCHHHHCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCEEEEEECCCCCCCCEE FYTLPYQASMNAMYDRLCGLFGNNVVGLQHGRAAQALYARFRDGEEWSATTVRKVQWEKN EEECCCHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCC LNLLHARPLKVLSPYQLLKALFQLRGFEAMLTDYARAGFIFDEIHAYEPERLALITGLMR CCEEECCCHHHCCHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHH YLRRHVAARFFVMSATFPTLILEQLSDVLDTPTIIQATPDIFARFRRHQLYLRDGELTDP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHEEEEECCCCCCH AIITEIVTAVRDGKQVLVCVNTVARAQMVRDLLMQAGLSDEQLILIHSRFTYGDRNRLEQ HHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHH TIVERCRSDSARRPPLALVATQVVEVSLDIDLDTLYSDPAPLEALLQRFGRVNRRAAKGI HHHHHHHCCCCCCCCHHHHHHHHHHEEEECCHHHHCCCCCCHHHHHHHHHHHHHHHHCCC CPVYIFRQPNDGQGVYGRHRDPEQAGHIVRVTLAELERHHGDIVDESAVQTWLDTIYADP CEEEEEECCCCCCCCCCCCCCHHHCCCEEEEEHHHHHHHCCCCCCHHHHHHHHHHHHHCH LLREQWLTAYQNISRQVEQIINGLCPFQSDAQREDEFEQMFDGVDVVPACFERDYVSLLV HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH EERFIEANDYLVSISKQRFAILRSQGKVRPAEETGQRRVWVVQTPYDSRNGLSFGDTVID HHHHHCCCCEEEEEHHHHHHHHHHCCCCCCHHHCCCCEEEEEECCCCCCCCCCCCCCCCC PDWS CCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]