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The map label for this gene is ideR [H]

Identifier: 222525867

GI number: 222525867

Start: 3255796

End: 3256491

Strand: Direct

Name: ideR [H]

Synonym: Chy400_2620

Alternate gene names: 222525867

Gene position: 3255796-3256491 (Clockwise)

Preceding gene: 222525866

Following gene: 222525868

Centisome position: 61.79

GC content: 54.89

Gene sequence:

>696_bases
ATGGTTACATCCCATCTACCGCTCTTTTTCGTACAAGGAACCATGCGGCTTGCCGAACCTGAAGCCACCTGCCTGCTCGC
TCTGGCCGATCTGGCTGAACACGACGAACCGGTCTTTGCTGACCAGTTGGTGCGTTGTTTACATATTGAGCCTGAGCAGC
TATTGCAGACATTGCAGCATCTGTTCACGCGCCAGTTGGTTACGGCTGTAGAGCGAGGTGGACTGGCTTTAACCGCAAAT
GGTTATTTGCTGGCCCGGCACCTGATCGTCCGCCATCGCTTGTTGGAGCGGTTTTTGTTGGATGTGGTTGGCGTGCCGTG
GATATTTGTTCATCGCGAGGCTGCCCGGTTAGCGCCAGTTGTTTCGCCCCTGTTTCTTGAACGTGTGGTTGAATTAACCC
GCCATGCGACGGTGTGTCCGCATGGTAATCCGATCCCTGGGCGCAGTGATCTGGCAACGACGGAGGTATGCTTACCGAAT
GCACCGATGGGGCAGCGTTGTCGTCTCACTCGTATTGCCGAGTGGGTTGGCTATGAAACACATCTGTTACAGCGATTGTG
GAGTCATGAGCTTCTGCCAGGACGTAGCTTTGTGCGTGTGCCCGATCCCTTCCAGCGCTACGTGATTGTCGTGGATCAGC
GAGTGCTGGTGTTAGGGCCGCGGATTGCCAGTGCGTTATTCGTCGTTGTTGAATAG

Upstream 100 bases:

>100_bases
CTGGACCTATATGACGCCGATCTACATCAAATTGACATAATTTTTGTTGATGTCATAACCTGATAGGTGGTCTGCTTGTA
ATTCAACAGGAGCGTCATTC

Downstream 100 bases:

>100_bases
TTTTCACCGTCTCTTAGGAGAAAGTGAGATGTTTCAGATAAAGTTGATAATAGGAGTACCGGTGAGATTGAGGCTTACGC
TTTATGAGACATAAGAATAC

Product: DtxR family iron (metal) dependent repressor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MVTSHLPLFFVQGTMRLAEPEATCLLALADLAEHDEPVFADQLVRCLHIEPEQLLQTLQHLFTRQLVTAVERGGLALTAN
GYLLARHLIVRHRLLERFLLDVVGVPWIFVHREAARLAPVVSPLFLERVVELTRHATVCPHGNPIPGRSDLATTEVCLPN
APMGQRCRLTRIAEWVGYETHLLQRLWSHELLPGRSFVRVPDPFQRYVIVVDQRVLVLGPRIASALFVVVE

Sequences:

>Translated_231_residues
MVTSHLPLFFVQGTMRLAEPEATCLLALADLAEHDEPVFADQLVRCLHIEPEQLLQTLQHLFTRQLVTAVERGGLALTAN
GYLLARHLIVRHRLLERFLLDVVGVPWIFVHREAARLAPVVSPLFLERVVELTRHATVCPHGNPIPGRSDLATTEVCLPN
APMGQRCRLTRIAEWVGYETHLLQRLWSHELLPGRSFVRVPDPFQRYVIVVDQRVLVLGPRIASALFVVVE
>Mature_231_residues
MVTSHLPLFFVQGTMRLAEPEATCLLALADLAEHDEPVFADQLVRCLHIEPEQLLQTLQHLFTRQLVTAVERGGLALTAN
GYLLARHLIVRHRLLERFLLDVVGVPWIFVHREAARLAPVVSPLFLERVVELTRHATVCPHGNPIPGRSDLATTEVCLPN
APMGQRCRLTRIAEWVGYETHLLQRLWSHELLPGRSFVRVPDPFQRYVIVVDQRVLVLGPRIASALFVVVE

Specific function: Metal-dependent DNA-binding protein that controls transcription of many genes involved in iron metabolism [H]

COG id: COG1321

COG function: function code K; Mn-dependent transcriptional regulator

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH dtxR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007167
- InterPro:   IPR001367
- InterPro:   IPR022689
- InterPro:   IPR022687
- InterPro:   IPR008988
- InterPro:   IPR011991 [H]

Pfam domain/function: PF02742 Fe_dep_repr_C; PF01325 Fe_dep_repress; PF04023 FeoA [H]

EC number: NA

Molecular weight: Translated: 26124; Mature: 26124

Theoretical pI: Translated: 7.35; Mature: 7.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVTSHLPLFFVQGTMRLAEPEATCLLALADLAEHDEPVFADQLVRCLHIEPEQLLQTLQH
CCCCCCCCEEEECCHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHH
LFTRQLVTAVERGGLALTANGYLLARHLIVRHRLLERFLLDVVGVPWIFVHREAARLAPV
HHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHH
VSPLFLERVVELTRHATVCPHGNPIPGRSDLATTEVCLPNAPMGQRCRLTRIAEWVGYET
HHHHHHHHHHHHHHCCEECCCCCCCCCCCCCCHHHEECCCCCCCCHHHHHHHHHHHCHHH
HLLQRLWSHELLPGRSFVRVPDPFQRYVIVVDQRVLVLGPRIASALFVVVE
HHHHHHHHCCCCCCCCEEECCCHHHHEEEEECCEEEEECHHHHHHEEEEEC
>Mature Secondary Structure
MVTSHLPLFFVQGTMRLAEPEATCLLALADLAEHDEPVFADQLVRCLHIEPEQLLQTLQH
CCCCCCCCEEEECCHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHH
LFTRQLVTAVERGGLALTANGYLLARHLIVRHRLLERFLLDVVGVPWIFVHREAARLAPV
HHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHH
VSPLFLERVVELTRHATVCPHGNPIPGRSDLATTEVCLPNAPMGQRCRLTRIAEWVGYET
HHHHHHHHHHHHHHCCEECCCCCCCCCCCCCCHHHEECCCCCCCCHHHHHHHHHHHCHHH
HLLQRLWSHELLPGRSFVRVPDPFQRYVIVVDQRVLVLGPRIASALFVVVE
HHHHHHHHCCCCCCCCEEECCCHHHHEEEEECCEEEEECHHHHHHEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]