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The map label for this gene is ypdF [C]

Identifier: 222524625

GI number: 222524625

Start: 1721605

End: 1722789

Strand: Direct

Name: ypdF [C]

Synonym: Chy400_1349

Alternate gene names: 222524625

Gene position: 1721605-1722789 (Clockwise)

Preceding gene: 222524624

Following gene: 222524628

Centisome position: 32.67

GC content: 56.03

Gene sequence:

>1185_bases
ATGACGGACCTCTATCACGAAAAGTTACATCAGGCACAAGAGCTGCTGGCTGCGTATGACCTTGATCTCTGGCTGATCTT
TGTCCGTGAGACTGCCGAACATACCGATCCCGCCCTGAAACTTCTCGGTCATTTTTCCCTCACCTGGCCAACCGCAATTG
TGATTACCCGTCAGGGTCGGGCACTGGCGCTAACCGGATTGGGTGATGATGAAGCGGTACGCCATACCGGTTTATTTGAT
GAAGTACGTACCTACACCCAAAGTATCGGCCCTGAACTGGTACGTCTGTTATCCACATATAATCCACAGCGAATTGGGAT
TAACATCAGTCGGAGTGATGTCAGTGCTGATGGACTAACGTATGGGATGTACCTCAATCTGTGTGATTATCTGGCCGATA
CACCCTACCGGGAACGGCTCGTGTCAGCCGAGCAGTTTGTTGCCGCATTGCGCAGCCGCAAAACGCCCCAGGAAGTAGAT
CGCTTGCGCGCTGCGGCTGACCTCAGTATGCGCATTTTTGCCGCAGTTGGTGATTTTCTGCGTCCCGGTGTCAGCGAATA
CGACGTTGCAGCCTTTGCTCACGCGCAAACTCAGGCTGCCGGCGCCACCACGGCCTGGGACCCCGCCCATTGCCCTGGCC
TCAACGCTGGCCCCAACTCGCCATGGGGGCACGTCGGTCCCTCGGCTGAAATTGTCCGACCCGGGGAAGTATTTCACATG
GATTTTGGCGTCAAACTAAACGACTACTGCTCTGATCATCAGCGTGTCTGGTACTGCCTGCGCCCGGATGAACACGAGCC
GCCAGCAGAAGCGCAGCATGCGTTCAATGCCGTGAAGACCGCGATCCGTGCGGCTGCCGCTGCGGTACGTTCCGGCGTGG
TCGGTTGGGAGATCGATGCGATTGCGCGCCAGACCATTACCGCTGCCGGTTATCCTGAATATCCCCATGCGCTCGGTCAT
CAGGTTGGTCGATCAGTGCATGACGGTGGTGTTGGCTTCTACCCACGCTGGGAGCGCTACGGTGACAGGCCGTATGGTAC
CATCGAAGCCGGGATGGTTTTGACGCTGGAACTGGGTGTACGAACGCGCTTCGGCTATATATCGCTTGAAGAAGAGATTC
TGGTGACGGCGGACGGTTGTGAGTGGATTGGTCAACCGCAAGAAGAATTATGGTTAATTCGGTGA

Upstream 100 bases:

>100_bases
ACGCTTTAGCAAGAGGGTTGCGCCTGGACAATGCACATTGTTGAGCAAGATTTGGTATAACACTGGTGTCGCTGATCCAG
TGTAAGAAATGGAGCGCTGT

Downstream 100 bases:

>100_bases
GTTGTCGCCATCTTGCAGCACTGCGCGGTTTGAGTGATGCGTCATATCAAATCTTGAGTGATAGCACGCATCACAGCTGA
TGCCACCGAACACGCAGTGA

Product: peptidase M24

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 394; Mature: 393

Protein sequence:

>394_residues
MTDLYHEKLHQAQELLAAYDLDLWLIFVRETAEHTDPALKLLGHFSLTWPTAIVITRQGRALALTGLGDDEAVRHTGLFD
EVRTYTQSIGPELVRLLSTYNPQRIGINISRSDVSADGLTYGMYLNLCDYLADTPYRERLVSAEQFVAALRSRKTPQEVD
RLRAAADLSMRIFAAVGDFLRPGVSEYDVAAFAHAQTQAAGATTAWDPAHCPGLNAGPNSPWGHVGPSAEIVRPGEVFHM
DFGVKLNDYCSDHQRVWYCLRPDEHEPPAEAQHAFNAVKTAIRAAAAAVRSGVVGWEIDAIARQTITAAGYPEYPHALGH
QVGRSVHDGGVGFYPRWERYGDRPYGTIEAGMVLTLELGVRTRFGYISLEEEILVTADGCEWIGQPQEELWLIR

Sequences:

>Translated_394_residues
MTDLYHEKLHQAQELLAAYDLDLWLIFVRETAEHTDPALKLLGHFSLTWPTAIVITRQGRALALTGLGDDEAVRHTGLFD
EVRTYTQSIGPELVRLLSTYNPQRIGINISRSDVSADGLTYGMYLNLCDYLADTPYRERLVSAEQFVAALRSRKTPQEVD
RLRAAADLSMRIFAAVGDFLRPGVSEYDVAAFAHAQTQAAGATTAWDPAHCPGLNAGPNSPWGHVGPSAEIVRPGEVFHM
DFGVKLNDYCSDHQRVWYCLRPDEHEPPAEAQHAFNAVKTAIRAAAAAVRSGVVGWEIDAIARQTITAAGYPEYPHALGH
QVGRSVHDGGVGFYPRWERYGDRPYGTIEAGMVLTLELGVRTRFGYISLEEEILVTADGCEWIGQPQEELWLIR
>Mature_393_residues
TDLYHEKLHQAQELLAAYDLDLWLIFVRETAEHTDPALKLLGHFSLTWPTAIVITRQGRALALTGLGDDEAVRHTGLFDE
VRTYTQSIGPELVRLLSTYNPQRIGINISRSDVSADGLTYGMYLNLCDYLADTPYRERLVSAEQFVAALRSRKTPQEVDR
LRAAADLSMRIFAAVGDFLRPGVSEYDVAAFAHAQTQAAGATTAWDPAHCPGLNAGPNSPWGHVGPSAEIVRPGEVFHMD
FGVKLNDYCSDHQRVWYCLRPDEHEPPAEAQHAFNAVKTAIRAAAAAVRSGVVGWEIDAIARQTITAAGYPEYPHALGHQ
VGRSVHDGGVGFYPRWERYGDRPYGTIEAGMVLTLELGVRTRFGYISLEEEILVTADGCEWIGQPQEELWLIR

Specific function: Unknown

COG id: COG0006

COG function: function code E; Xaa-Pro aminopeptidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M24B family [H]

Homologues:

Organism=Escherichia coli, GI1788728, Length=249, Percent_Identity=32.9317269076305, Blast_Score=96, Evalue=5e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000587
- InterPro:   IPR000994
- InterPro:   IPR001131 [H]

Pfam domain/function: PF01321 Creatinase_N; PF00557 Peptidase_M24 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 43699; Mature: 43567

Theoretical pI: Translated: 5.25; Mature: 5.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDLYHEKLHQAQELLAAYDLDLWLIFVRETAEHTDPALKLLGHFSLTWPTAIVITRQGR
CCCHHHHHHHHHHHHHHHHCCCEEEEEEEHHHCCCCHHHHHHHCCCCCCCEEEEEEECCC
ALALTGLGDDEAVRHTGLFDEVRTYTQSIGPELVRLLSTYNPQRIGINISRSDVSADGLT
EEEEECCCCCHHHHHCCCHHHHHHHHHHHCHHHHHHHHCCCCCEEEEEEECCCCCCCCCH
YGMYLNLCDYLADTPYRERLVSAEQFVAALRSRKTPQEVDRLRAAADLSMRIFAAVGDFL
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
RPGVSEYDVAAFAHAQTQAAGATTAWDPAHCPGLNAGPNSPWGHVGPSAEIVRPGEVFHM
CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEEEE
DFGVKLNDYCSDHQRVWYCLRPDEHEPPAEAQHAFNAVKTAIRAAAAAVRSGVVGWEIDA
ECCCEEHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHH
IARQTITAAGYPEYPHALGHQVGRSVHDGGVGFYPRWERYGDRPYGTIEAGMVLTLELGV
HHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCEECCCEEEEEEECC
RTRFGYISLEEEILVTADGCEWIGQPQEELWLIR
EEECCEEEECCEEEEEECCCHHCCCCHHHEEECC
>Mature Secondary Structure 
TDLYHEKLHQAQELLAAYDLDLWLIFVRETAEHTDPALKLLGHFSLTWPTAIVITRQGR
CCHHHHHHHHHHHHHHHHCCCEEEEEEEHHHCCCCHHHHHHHCCCCCCCEEEEEEECCC
ALALTGLGDDEAVRHTGLFDEVRTYTQSIGPELVRLLSTYNPQRIGINISRSDVSADGLT
EEEEECCCCCHHHHHCCCHHHHHHHHHHHCHHHHHHHHCCCCCEEEEEEECCCCCCCCCH
YGMYLNLCDYLADTPYRERLVSAEQFVAALRSRKTPQEVDRLRAAADLSMRIFAAVGDFL
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
RPGVSEYDVAAFAHAQTQAAGATTAWDPAHCPGLNAGPNSPWGHVGPSAEIVRPGEVFHM
CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEEEE
DFGVKLNDYCSDHQRVWYCLRPDEHEPPAEAQHAFNAVKTAIRAAAAAVRSGVVGWEIDA
ECCCEEHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHH
IARQTITAAGYPEYPHALGHQVGRSVHDGGVGFYPRWERYGDRPYGTIEAGMVLTLELGV
HHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCEECCCEEEEEEECC
RTRFGYISLEEEILVTADGCEWIGQPQEELWLIR
EEECCEEEECCEEEEEECCCHHCCCCHHHEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA