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The map label for this gene is glgB [H]

Identifier: 222524548

GI number: 222524548

Start: 1624202

End: 1626235

Strand: Direct

Name: glgB [H]

Synonym: Chy400_1272

Alternate gene names: 222524548

Gene position: 1624202-1626235 (Clockwise)

Preceding gene: 222524547

Following gene: 222524549

Centisome position: 30.83

GC content: 56.34

Gene sequence:

>2034_bases
ATGAGTGATACCGAAAAACCTCGCCGCACCCGCCGTAAACAGGTGGCGAATACTGATGAGCCTTCCACGACAGTGACGGC
CTCGACCACGGATGCACCAACCGCAACCATTGAGGAACCTTCGGCGGCTGCTCGTGCTATGATGACCAGTATCCTCAGCG
AGGATGATATTTATCTGTTCAACCAGGGCACCCATTACCGCTTGTACGACAAATTTGGTGCTCAGCCGGTGGTGCTGGAA
GGTGTACCGGGCACCTATTTTGCGGTTTGGGCACCAAATGCCGAGTATGTGGCCGTGATCGGCGACTGGAATAACTGGGA
CGCCGGTGCCAACCCGCTCCGGCAGCGCGGCTTTTCGGGTGTGTGGGAGGGATTTATCCCCCACGTCGGTAAAGGCATGC
GCTACAAGTTCCACATCGCCTCGCGCTACTACGGCTATCGCGAAGACAAGACAGATCCCTTCGGCACCTACTTCGAGGTC
GCACCGCAGACGGCTGCCATTATCTGGGATCGCGATTACACCTGGTCGGATCAACAGTGGATGAGCGAACGGGGGCAGCG
GCAGCGCCTCGATGCGCCGATCTCCATCTACGAAGTGCATTTGGGATCGTGGCGGCGCAAACCGGAAGAGGATAACCGTC
CGCTCAATTACCGTGAACTGGCCCACGAGCTGGTCGAGCATGTGAAAGATTGTGGCTTTACCCACGTTGAGCTGTTACCG
GTCACCGAGCATCCCTTCTACGGTTCCTGGGGGTATCAATCGACGGGTATGTTCGCGCCGACCAGCCGGTACGGAACGCC
GCAAGACTTCATGTATTTTGTGGATTATCTGCATCAAAACGGGATTGGGGTGATCCTCGATTGGGTGCCCAGCCACTTCC
CGACCGACGGTCATGGGCTGGCCTACTTCGATGGTACCCATCTCTACGAACACGCCGATCCGCGTAAAGGCTACCATCCC
GACTGGGGAAGCTATATTTACAACTATGGTCGGAACGAGGTACGAAGCTTCCTGATCAGCTCGGCGCTCTGCTGGCTGGA
TAAGTTTCACATTGACGGGATACGGGTTGATGCGGTTGCGAGCATGCTCTATCTCGACTATTCGCGCCGAGCCGGCGAGT
GGATTCCCAACGAATACGGTGGGAACGAAAATCTGGAGGCGATTAGCTTCCTGCGCGAATTGAACACCCAGATTTACAAG
TACTACCCTGATGTGCAGACAATTGCCGAGGAGAGCACAGCCTGGCCGATGGTATCGCGACCGGTCTACGTTGGTGGATT
GGGCTTCGGCTTCAAGTGGGACATGGGCTGGATGCACGATACCCTGCAGTATTTCCGGCGCGATCCGATCTACCGGCGCT
TTCATCACAACGAATTGACCTTCCGTGGCCTCTACATGTTCAGCGAGAACTACGTGCTACCACTCTCGCACGATGAGGTC
GTTCACGGCAAAGGGTCACTGCTCGACAAGATGGCCGGCGATGTCTGGCAAAAGTTTGCCAACCTGCGCCTGCTCTACAG
CTATATGTTTGCTCAACCCGGTAAAAAACTGCTCTTCATGGGTGGTGAATTCGGACAGTGGCGCGAATGGTCACACGACA
CCAGCCTGGACTGGCACTTACTGATGTTTCCCTCCCATCAGGGCGTACAACGATTGATTGGCGATCTTAACCGTCTCTAC
CGTACTGAGCCGGCCTTGCACGAACTGGACTGTGATCCACGTGGGTTTGAGTGGATCGATGCCAATGATGCCGATGCCAG
CGTCTACAGCTTTCTGCGCAAGAGCCGCTACGGCGAGCAAATTCTGATCGTGATCAATGCCACGCCGGTCGTGCGTGAGG
ATTACCGAATTGGGGTACCGGTGGGTGGCTGGTGGCGTGAATTGTTTAACAGCGACTCGGAGTATTATTGGGGAAGTGGG
CAAGGCAATGCCGGCGGCGTGATGGCCGAAGCAATTCCAACCCATGGCCGGGATTTTTCGTTGCGACTGCGCCTGCCGCC
CCTGGGTGCGCTCTTCCTGAAACCTGCCGGCTAA

Upstream 100 bases:

>100_bases
CGATCCCGATCAACGGCATCTTACGCCAGATTGAAGAATGATCGCTGCCGCCGATGTTCCTGCACTACCATCGGCTTGAA
GCACCATAAAGGAGGCTGCA

Downstream 100 bases:

>100_bases
GTGCTGCCACTGCAAGACGCACGTTTAGCGTGCTTCCATTTCGTACCTGCCGATTGTTCGTACTACACTTGACCGGGAGT
GACTTGCCGACGTGAGTTAC

Product: glycogen branching enzyme

Products: NA

Alternate protein names: 1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase; Glycogen-branching enzyme; BE [H]

Number of amino acids: Translated: 677; Mature: 676

Protein sequence:

>677_residues
MSDTEKPRRTRRKQVANTDEPSTTVTASTTDAPTATIEEPSAAARAMMTSILSEDDIYLFNQGTHYRLYDKFGAQPVVLE
GVPGTYFAVWAPNAEYVAVIGDWNNWDAGANPLRQRGFSGVWEGFIPHVGKGMRYKFHIASRYYGYREDKTDPFGTYFEV
APQTAAIIWDRDYTWSDQQWMSERGQRQRLDAPISIYEVHLGSWRRKPEEDNRPLNYRELAHELVEHVKDCGFTHVELLP
VTEHPFYGSWGYQSTGMFAPTSRYGTPQDFMYFVDYLHQNGIGVILDWVPSHFPTDGHGLAYFDGTHLYEHADPRKGYHP
DWGSYIYNYGRNEVRSFLISSALCWLDKFHIDGIRVDAVASMLYLDYSRRAGEWIPNEYGGNENLEAISFLRELNTQIYK
YYPDVQTIAEESTAWPMVSRPVYVGGLGFGFKWDMGWMHDTLQYFRRDPIYRRFHHNELTFRGLYMFSENYVLPLSHDEV
VHGKGSLLDKMAGDVWQKFANLRLLYSYMFAQPGKKLLFMGGEFGQWREWSHDTSLDWHLLMFPSHQGVQRLIGDLNRLY
RTEPALHELDCDPRGFEWIDANDADASVYSFLRKSRYGEQILIVINATPVVREDYRIGVPVGGWWRELFNSDSEYYWGSG
QGNAGGVMAEAIPTHGRDFSLRLRLPPLGALFLKPAG

Sequences:

>Translated_677_residues
MSDTEKPRRTRRKQVANTDEPSTTVTASTTDAPTATIEEPSAAARAMMTSILSEDDIYLFNQGTHYRLYDKFGAQPVVLE
GVPGTYFAVWAPNAEYVAVIGDWNNWDAGANPLRQRGFSGVWEGFIPHVGKGMRYKFHIASRYYGYREDKTDPFGTYFEV
APQTAAIIWDRDYTWSDQQWMSERGQRQRLDAPISIYEVHLGSWRRKPEEDNRPLNYRELAHELVEHVKDCGFTHVELLP
VTEHPFYGSWGYQSTGMFAPTSRYGTPQDFMYFVDYLHQNGIGVILDWVPSHFPTDGHGLAYFDGTHLYEHADPRKGYHP
DWGSYIYNYGRNEVRSFLISSALCWLDKFHIDGIRVDAVASMLYLDYSRRAGEWIPNEYGGNENLEAISFLRELNTQIYK
YYPDVQTIAEESTAWPMVSRPVYVGGLGFGFKWDMGWMHDTLQYFRRDPIYRRFHHNELTFRGLYMFSENYVLPLSHDEV
VHGKGSLLDKMAGDVWQKFANLRLLYSYMFAQPGKKLLFMGGEFGQWREWSHDTSLDWHLLMFPSHQGVQRLIGDLNRLY
RTEPALHELDCDPRGFEWIDANDADASVYSFLRKSRYGEQILIVINATPVVREDYRIGVPVGGWWRELFNSDSEYYWGSG
QGNAGGVMAEAIPTHGRDFSLRLRLPPLGALFLKPAG
>Mature_676_residues
SDTEKPRRTRRKQVANTDEPSTTVTASTTDAPTATIEEPSAAARAMMTSILSEDDIYLFNQGTHYRLYDKFGAQPVVLEG
VPGTYFAVWAPNAEYVAVIGDWNNWDAGANPLRQRGFSGVWEGFIPHVGKGMRYKFHIASRYYGYREDKTDPFGTYFEVA
PQTAAIIWDRDYTWSDQQWMSERGQRQRLDAPISIYEVHLGSWRRKPEEDNRPLNYRELAHELVEHVKDCGFTHVELLPV
TEHPFYGSWGYQSTGMFAPTSRYGTPQDFMYFVDYLHQNGIGVILDWVPSHFPTDGHGLAYFDGTHLYEHADPRKGYHPD
WGSYIYNYGRNEVRSFLISSALCWLDKFHIDGIRVDAVASMLYLDYSRRAGEWIPNEYGGNENLEAISFLRELNTQIYKY
YPDVQTIAEESTAWPMVSRPVYVGGLGFGFKWDMGWMHDTLQYFRRDPIYRRFHHNELTFRGLYMFSENYVLPLSHDEVV
HGKGSLLDKMAGDVWQKFANLRLLYSYMFAQPGKKLLFMGGEFGQWREWSHDTSLDWHLLMFPSHQGVQRLIGDLNRLYR
TEPALHELDCDPRGFEWIDANDADASVYSFLRKSRYGEQILIVINATPVVREDYRIGVPVGGWWRELFNSDSEYYWGSGQ
GNAGGVMAEAIPTHGRDFSLRLRLPPLGALFLKPAG

Specific function: Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position [H]

COG id: COG0296

COG function: function code G; 1,4-alpha-glucan branching enzyme

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 13 family [H]

Homologues:

Organism=Homo sapiens, GI189458812, Length=667, Percent_Identity=26.2368815592204, Blast_Score=174, Evalue=2e-43,
Organism=Escherichia coli, GI1789839, Length=625, Percent_Identity=55.04, Blast_Score=688, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17554896, Length=377, Percent_Identity=31.5649867374005, Blast_Score=181, Evalue=1e-45,
Organism=Caenorhabditis elegans, GI32564391, Length=342, Percent_Identity=30.4093567251462, Blast_Score=160, Evalue=3e-39,
Organism=Saccharomyces cerevisiae, GI6320826, Length=655, Percent_Identity=26.1068702290076, Blast_Score=168, Evalue=3e-42,
Organism=Drosophila melanogaster, GI28573410, Length=482, Percent_Identity=30.7053941908714, Blast_Score=179, Evalue=8e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006407
- InterPro:   IPR006048
- InterPro:   IPR013780
- InterPro:   IPR006047
- InterPro:   IPR004193
- InterPro:   IPR017853
- InterPro:   IPR013781
- InterPro:   IPR013783 [H]

Pfam domain/function: PF00128 Alpha-amylase; PF02806 Alpha-amylase_C; PF02922 CBM_48 [H]

EC number: =2.4.1.18 [H]

Molecular weight: Translated: 78188; Mature: 78057

Theoretical pI: Translated: 5.99; Mature: 5.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDTEKPRRTRRKQVANTDEPSTTVTASTTDAPTATIEEPSAAARAMMTSILSEDDIYLF
CCCCCHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEE
NQGTHYRLYDKFGAQPVVLEGVPGTYFAVWAPNAEYVAVIGDWNNWDAGANPLRQRGFSG
ECCCEEEEHHHCCCCEEEEECCCCCEEEEECCCCCEEEEEECCCCCCCCCCHHHHCCCCH
VWEGFIPHVGKGMRYKFHIASRYYGYREDKTDPFGTYFEVAPQTAAIIWDRDYTWSDQQW
HHHHHHHHCCCCCEEEEEEEHHHCCCCCCCCCCCCCEEEECCCEEEEEECCCCCCCHHHH
MSERGQRQRLDAPISIYEVHLGSWRRKPEEDNRPLNYRELAHELVEHVKDCGFTHVELLP
HHHCCHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEE
VTEHPFYGSWGYQSTGMFAPTSRYGTPQDFMYFVDYLHQNGIGVILDWVPSHFPTDGHGL
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEE
AYFDGTHLYEHADPRKGYHPDWGSYIYNYGRNEVRSFLISSALCWLDKFHIDGIRVDAVA
EEECCCCHHCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEHHHHH
SMLYLDYSRRAGEWIPNEYGGNENLEAISFLRELNTQIYKYYPDVQTIAEESTAWPMVSR
HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHEEECCCHHHHHHCCCCCCEECC
PVYVGGLGFGFKWDMGWMHDTLQYFRRDPIYRRFHHNELTFRGLYMFSENYVLPLSHDEV
CEEEEECCCCEEECCCHHHHHHHHHHCCCHHHHHCCCCEEEEEEEEECCCEEEECCCCCE
VHGKGSLLDKMAGDVWQKFANLRLLYSYMFAQPGKKLLFMGGEFGQWREWSHDTSLDWHL
ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCEEE
LMFPSHQGVQRLIGDLNRLYRTEPALHELDCDPRGFEWIDANDADASVYSFLRKSRYGEQ
EEECCCHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCEEECCCCCHHHHHHHHHHHCCCCE
ILIVINATPVVREDYRIGVPVGGWWRELFNSDSEYYWGSGQGNAGGVMAEAIPTHGRDFS
EEEEEECCCEEECCCEECCCCCHHHHHHHCCCCCEEECCCCCCCCCEEEECCCCCCCCEE
LRLRLPPLGALFLKPAG
EEEECCCCCEEEEECCC
>Mature Secondary Structure 
SDTEKPRRTRRKQVANTDEPSTTVTASTTDAPTATIEEPSAAARAMMTSILSEDDIYLF
CCCCHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEE
NQGTHYRLYDKFGAQPVVLEGVPGTYFAVWAPNAEYVAVIGDWNNWDAGANPLRQRGFSG
ECCCEEEEHHHCCCCEEEEECCCCCEEEEECCCCCEEEEEECCCCCCCCCCHHHHCCCCH
VWEGFIPHVGKGMRYKFHIASRYYGYREDKTDPFGTYFEVAPQTAAIIWDRDYTWSDQQW
HHHHHHHHCCCCCEEEEEEEHHHCCCCCCCCCCCCCEEEECCCEEEEEECCCCCCCHHHH
MSERGQRQRLDAPISIYEVHLGSWRRKPEEDNRPLNYRELAHELVEHVKDCGFTHVELLP
HHHCCHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEE
VTEHPFYGSWGYQSTGMFAPTSRYGTPQDFMYFVDYLHQNGIGVILDWVPSHFPTDGHGL
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEE
AYFDGTHLYEHADPRKGYHPDWGSYIYNYGRNEVRSFLISSALCWLDKFHIDGIRVDAVA
EEECCCCHHCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEHHHHH
SMLYLDYSRRAGEWIPNEYGGNENLEAISFLRELNTQIYKYYPDVQTIAEESTAWPMVSR
HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHEEECCCHHHHHHCCCCCCEECC
PVYVGGLGFGFKWDMGWMHDTLQYFRRDPIYRRFHHNELTFRGLYMFSENYVLPLSHDEV
CEEEEECCCCEEECCCHHHHHHHHHHCCCHHHHHCCCCEEEEEEEEECCCEEEECCCCCE
VHGKGSLLDKMAGDVWQKFANLRLLYSYMFAQPGKKLLFMGGEFGQWREWSHDTSLDWHL
ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCEEE
LMFPSHQGVQRLIGDLNRLYRTEPALHELDCDPRGFEWIDANDADASVYSFLRKSRYGEQ
EEECCCHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCEEECCCCCHHHHHHHHHHHCCCCE
ILIVINATPVVREDYRIGVPVGGWWRELFNSDSEYYWGSGQGNAGGVMAEAIPTHGRDFS
EEEEEECCCEEECCCEECCCCCHHHHHHHCCCCCEEECCCCCCCCCEEEECCCCCCCCEE
LRLRLPPLGALFLKPAG
EEEECCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]