| Definition | Chloroflexus sp. Y-400-fl chromosome, complete genome. |
|---|---|
| Accession | NC_012032 |
| Length | 5,268,950 |
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The map label for this gene is pheT [H]
Identifier: 222524234
GI number: 222524234
Start: 1221394
End: 1223976
Strand: Reverse
Name: pheT [H]
Synonym: Chy400_0956
Alternate gene names: 222524234
Gene position: 1223976-1221394 (Counterclockwise)
Preceding gene: 222524236
Following gene: 222524233
Centisome position: 23.23
GC content: 59.19
Gene sequence:
>2583_bases ATGAGAGTTCCACTGTCGTGGTTGCGAGAATTTGTAACAATTGATCTGCCGGTCGAGGAACTGGCCCGCCGCCTGACCTT TGGCGGTATGGAGGTCGCTCAGATTCATCGTATCGGCGTTGAAGGTGCCCCTTTGCCCTGGGATCCCGAACTGATCGTGG TGGCAAACGTCCTGGAGGTTCGTTCGCATCCGAACGCAGATCGCCTGGTGCTGGCCGACGTTGATTACGGTGCCGCGCAG CCCCATACGGTGGTGACCGGTGCCCCCAATCTGTTTCAGTACCGTGATCAAGGGCGTTTAACTCATCCGCTCAAGGCGGT ATTCGCTCGCGAAGGTGCGCAGTTGTACGATGGTCACGCTGAAGGGTGGGTGATTACAAAACTCAAGGGCCGCCCGGTAC GTGGCGTGATGAGCGATGCCATGCTCTGTTCCGAGAAAGAGCTGGGGTTGAGTGAGGATCACGAAGGTATTTTGATTTTG CCCGATGACGCACCGGTCGGAATGCCGTTACGCGATTATTTAGGCGAAGTAGTGCTTGAAATTGATCTCACGCCTAATTT CGCTCGTTGTCTCTCTATTGTTGGTGTGGCCCGCGAAGTTGCCGCCCTCACCGGTGCACCACTGCATATCCCCGAACCAC AGGTTGAGGCAACCGGCCCTTCGCTGATTGGGCGGGCCGCAGTGACTGTGCTTACCCCCGATCTCTGTCCGCGCTTTATG GTCGGGCTGGCAGAAGGCGTCAAGATCGGTCCGTCACCCTTCTGGATGCAGCGCCGGCTGATCAATGCCGGGATGCGCCC GATTAACAATATTGTTGACATTTCCAACTATGTGATGCTGGAGTGGGGCCAACCAACCCACGCCTTCGACGCCGACCGGG TTGCCAATCGTCATTTGATTGTGCGGCTGGCCCAGCCTGGCGAACGCCTGACCACGCTCGATAACCGTGACCGTGATTTA ACCCCTGGTGATGAGAGTGGCTTAACCCATCCGCCCCTGCTGGTTTGCGATGAGACCGGGCCGCTGGCGGTGGCGGGTGT GATGGGTGGTGCAAGTTCAGAGGTAAGCGAGGCAACAACGAATGTCTTGCTGGAAGCGGCGATCTGGGAACCGGTACAGA TCCGACGTACCGCCCGTGGCCTGAAGCTGCCTAGTGAGGCATCACGCCGCTTTGAACGCGGGGTAGATTACGAGTTGCCC CCTATCGCGCTGCGTCGCTGTCTCGAACTGATGCGTCTCTACGCCGGTGCCACCATTGCCGCCGATTTCATCGATGTCTA CTCGCGTCCGTGGCAGTCGGTGACGATTGATTTACCTCCGTCCGAAGTGCGTCGGCTCCTCGGCATTCACCTCGATAGCC ATACCATTGCCGACATGCTCAGCCGTCTTGGCTTTGAGTGTACGGTGGTGGGAAGTGCAACGGTCGGTGATTTTGCCATG CTGGCGGTTGAACCGACAGTGCGCGTGAAGGTGCCTTCATTTCGACAAGATGTGACCATGACGGCTGACCTGTGCGAGGA GATTGCTCGCATCTACGGTTATGACCGCATCCCAGATACCCGACTGGCCGACGAGCTGCCGCCACCGGCGACCCAGCGCG CTATCGAGCTTGAGGAGCAGGTTCGTGATCTGATGGCCGGCGCCGGTCTGACCGAATTGATCACCTATTCGCTGATCGAT ATGGAGCTGGTTGCCAGGGTCCACCCATCTGAAGCGATAGCTGATCGCTACCTCAAGCTGAGCAATCCCAGCACACCAGA GCATGTCTACCTGCGCCGCTCGCTGCTGCCTTCAATTGCCGCAGCGCTGGCGATGAACCTCCGTGAACGCGAACGCTCGA CAGTCTTCGAGATCGGGCGGGTGTATCTCCCACTTGCCCAACCAGGACAGGATGATCGCTGGCTACCCGACGAACCCCGG CGTCTGGCAATCGCTCTCGCCGGTCCTCGCCAGCCAGAGAGCTGGTTGAGCACCGACCGCGACTGGCTCGATTTCTACGA TGTCAAAGGGATTGTCGAGCTGCTTGGTGAACGCCTGGGGCTGTCCGACCGGCTGAGCTTTGTGCCGCTCACCGACGACG AGCGCTTCCACCCCGGTCGGTCAGCGACGCTTGTGCTCACCACGCAACGTGACGGGCGTGGACGGGCGGTTGAGCAGCAG GTCGTTGGTGTGCTTGGCGAAGCCCATCCACAGGTACGTGCCCGGCTTGAGGTGACGGTACCGCGCATCGTGCTGGCCGA GATTGATCTGGAAACCCTGTTCGTCCATGCCGGACAGGCGGTCTACCGGCCAATTTCGCGCTTCCCGGCCAGTACGCAGG ACCTCTCCATTGTTGCCGACGAAACGGTGACTGAAGCCCAGATTCGGAGCGTCATTCAGCGTAGTGCCGGCGAATACCTG GAGAGCCTGGTCCTCTTCGACCGGTATAGTGGGCCACAAGTTGGTGAAGGCAAGCGGAGTCTTACCTATCACCTGACTTT CCGGGCTCCCGACCGCACCCTTCTCGACGAGACACTGGCGAAGATTCGCAAGAAGATCATTTCCAGTCTCGAACGGGAAC TGGGTGCTACAATCCGCAGCTAA
Upstream 100 bases:
>100_bases CAGGGTGATGGAACCCTATCGCTTTCCCGGTGCTCACTCTTGACAGTCCGCAGGGCCATGGCTACAATCGCAGCAGCCAG ATTGCTACACCGAGGAGCAT
Downstream 100 bases:
>100_bases GCGATGGCAACGGCACCGGCGAAACTCATCCTCTGTGGCGAGCACGCCGTCGTCTACGGTCGTCCGGCGATTGCTCTGCC ACTGGCCGATATTCGCGCCA
Product: phenylalanyl-tRNA synthetase subunit beta
Products: NA
Alternate protein names: Phenylalanine--tRNA ligase beta chain; PheRS [H]
Number of amino acids: Translated: 860; Mature: 860
Protein sequence:
>860_residues MRVPLSWLREFVTIDLPVEELARRLTFGGMEVAQIHRIGVEGAPLPWDPELIVVANVLEVRSHPNADRLVLADVDYGAAQ PHTVVTGAPNLFQYRDQGRLTHPLKAVFAREGAQLYDGHAEGWVITKLKGRPVRGVMSDAMLCSEKELGLSEDHEGILIL PDDAPVGMPLRDYLGEVVLEIDLTPNFARCLSIVGVAREVAALTGAPLHIPEPQVEATGPSLIGRAAVTVLTPDLCPRFM VGLAEGVKIGPSPFWMQRRLINAGMRPINNIVDISNYVMLEWGQPTHAFDADRVANRHLIVRLAQPGERLTTLDNRDRDL TPGDESGLTHPPLLVCDETGPLAVAGVMGGASSEVSEATTNVLLEAAIWEPVQIRRTARGLKLPSEASRRFERGVDYELP PIALRRCLELMRLYAGATIAADFIDVYSRPWQSVTIDLPPSEVRRLLGIHLDSHTIADMLSRLGFECTVVGSATVGDFAM LAVEPTVRVKVPSFRQDVTMTADLCEEIARIYGYDRIPDTRLADELPPPATQRAIELEEQVRDLMAGAGLTELITYSLID MELVARVHPSEAIADRYLKLSNPSTPEHVYLRRSLLPSIAAALAMNLRERERSTVFEIGRVYLPLAQPGQDDRWLPDEPR RLAIALAGPRQPESWLSTDRDWLDFYDVKGIVELLGERLGLSDRLSFVPLTDDERFHPGRSATLVLTTQRDGRGRAVEQQ VVGVLGEAHPQVRARLEVTVPRIVLAEIDLETLFVHAGQAVYRPISRFPASTQDLSIVADETVTEAQIRSVIQRSAGEYL ESLVLFDRYSGPQVGEGKRSLTYHLTFRAPDRTLLDETLAKIRKKIISSLERELGATIRS
Sequences:
>Translated_860_residues MRVPLSWLREFVTIDLPVEELARRLTFGGMEVAQIHRIGVEGAPLPWDPELIVVANVLEVRSHPNADRLVLADVDYGAAQ PHTVVTGAPNLFQYRDQGRLTHPLKAVFAREGAQLYDGHAEGWVITKLKGRPVRGVMSDAMLCSEKELGLSEDHEGILIL PDDAPVGMPLRDYLGEVVLEIDLTPNFARCLSIVGVAREVAALTGAPLHIPEPQVEATGPSLIGRAAVTVLTPDLCPRFM VGLAEGVKIGPSPFWMQRRLINAGMRPINNIVDISNYVMLEWGQPTHAFDADRVANRHLIVRLAQPGERLTTLDNRDRDL TPGDESGLTHPPLLVCDETGPLAVAGVMGGASSEVSEATTNVLLEAAIWEPVQIRRTARGLKLPSEASRRFERGVDYELP PIALRRCLELMRLYAGATIAADFIDVYSRPWQSVTIDLPPSEVRRLLGIHLDSHTIADMLSRLGFECTVVGSATVGDFAM LAVEPTVRVKVPSFRQDVTMTADLCEEIARIYGYDRIPDTRLADELPPPATQRAIELEEQVRDLMAGAGLTELITYSLID MELVARVHPSEAIADRYLKLSNPSTPEHVYLRRSLLPSIAAALAMNLRERERSTVFEIGRVYLPLAQPGQDDRWLPDEPR RLAIALAGPRQPESWLSTDRDWLDFYDVKGIVELLGERLGLSDRLSFVPLTDDERFHPGRSATLVLTTQRDGRGRAVEQQ VVGVLGEAHPQVRARLEVTVPRIVLAEIDLETLFVHAGQAVYRPISRFPASTQDLSIVADETVTEAQIRSVIQRSAGEYL ESLVLFDRYSGPQVGEGKRSLTYHLTFRAPDRTLLDETLAKIRKKIISSLERELGATIRS >Mature_860_residues MRVPLSWLREFVTIDLPVEELARRLTFGGMEVAQIHRIGVEGAPLPWDPELIVVANVLEVRSHPNADRLVLADVDYGAAQ PHTVVTGAPNLFQYRDQGRLTHPLKAVFAREGAQLYDGHAEGWVITKLKGRPVRGVMSDAMLCSEKELGLSEDHEGILIL PDDAPVGMPLRDYLGEVVLEIDLTPNFARCLSIVGVAREVAALTGAPLHIPEPQVEATGPSLIGRAAVTVLTPDLCPRFM VGLAEGVKIGPSPFWMQRRLINAGMRPINNIVDISNYVMLEWGQPTHAFDADRVANRHLIVRLAQPGERLTTLDNRDRDL TPGDESGLTHPPLLVCDETGPLAVAGVMGGASSEVSEATTNVLLEAAIWEPVQIRRTARGLKLPSEASRRFERGVDYELP PIALRRCLELMRLYAGATIAADFIDVYSRPWQSVTIDLPPSEVRRLLGIHLDSHTIADMLSRLGFECTVVGSATVGDFAM LAVEPTVRVKVPSFRQDVTMTADLCEEIARIYGYDRIPDTRLADELPPPATQRAIELEEQVRDLMAGAGLTELITYSLID MELVARVHPSEAIADRYLKLSNPSTPEHVYLRRSLLPSIAAALAMNLRERERSTVFEIGRVYLPLAQPGQDDRWLPDEPR RLAIALAGPRQPESWLSTDRDWLDFYDVKGIVELLGERLGLSDRLSFVPLTDDERFHPGRSATLVLTTQRDGRGRAVEQQ VVGVLGEAHPQVRARLEVTVPRIVLAEIDLETLFVHAGQAVYRPISRFPASTQDLSIVADETVTEAQIRSVIQRSAGEYL ESLVLFDRYSGPQVGEGKRSLTYHLTFRAPDRTLLDETLAKIRKKIISSLERELGATIRS
Specific function: Unknown
COG id: COG0072
COG function: function code J; Phenylalanyl-tRNA synthetase beta subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 tRNA-binding domain [H]
Homologues:
Organism=Homo sapiens, GI124028525, Length=308, Percent_Identity=24.3506493506494, Blast_Score=74, Evalue=7e-13, Organism=Escherichia coli, GI1788006, Length=871, Percent_Identity=34.443168771527, Blast_Score=400, Evalue=1e-112, Organism=Drosophila melanogaster, GI21355211, Length=307, Percent_Identity=25.4071661237785, Blast_Score=76, Evalue=1e-13,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005146 - InterPro: IPR005147 - InterPro: IPR009061 - InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR004532 - InterPro: IPR020825 - InterPro: IPR005121 - InterPro: IPR002547 [H]
Pfam domain/function: PF03483 B3_4; PF03484 B5; PF03147 FDX-ACB; PF01588 tRNA_bind [H]
EC number: =6.1.1.20 [H]
Molecular weight: Translated: 95208; Mature: 95208
Theoretical pI: Translated: 5.12; Mature: 5.12
Prosite motif: PS50886 TRBD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRVPLSWLREFVTIDLPVEELARRLTFGGMEVAQIHRIGVEGAPLPWDPELIVVANVLEV CCCCHHHHHHHHEECCCHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEHHHHH RSHPNADRLVLADVDYGAAQPHTVVTGAPNLFQYRDQGRLTHPLKAVFAREGAQLYDGHA HCCCCCCEEEEEECCCCCCCCCEEEECCCHHHHCCCCCCCCHHHHHHHHHCCCCEECCCC EGWVITKLKGRPVRGVMSDAMLCSEKELGLSEDHEGILILPDDAPVGMPLRDYLGEVVLE CCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHCCEEEE IDLTPNFARCLSIVGVAREVAALTGAPLHIPEPQVEATGPSLIGRAAVTVLTPDLCPRFM EECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHEEECHHHHHHHH VGLAEGVKIGPSPFWMQRRLINAGMRPINNIVDISNYVMLEWGQPTHAFDADRVANRHLI HHHHCCCEECCCHHHHHHHHHHHCCCHHHHHHCCCCEEEEECCCCCCCCCHHHHCCCEEE VRLAQPGERLTTLDNRDRDLTPGDESGLTHPPLLVCDETGPLAVAGVMGGASSEVSEATT EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCHHHHHHHH NVLLEAAIWEPVQIRRTARGLKLPSEASRRFERGVDYELPPIALRRCLELMRLYAGATIA HHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCHHHH ADFIDVYSRPWQSVTIDLPPSEVRRLLGIHLDSHTIADMLSRLGFECTVVGSATVGDFAM HHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEEECCCCCCEEE LAVEPTVRVKVPSFRQDVTMTADLCEEIARIYGYDRIPDTRLADELPPPATQRAIELEEQ EEECCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCHHHHHHHHHHH VRDLMAGAGLTELITYSLIDMELVARVHPSEAIADRYLKLSNPSTPEHVYLRRSLLPSIA HHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHEECCCCCCCHHHHHHHHHHHHHH AALAMNLRERERSTVFEIGRVYLPLAQPGQDDRWLPDEPRRLAIALAGPRQPESWLSTDR HHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHCCCC DWLDFYDVKGIVELLGERLGLSDRLSFVPLTDDERFHPGRSATLVLTTQRDGRGRAVEQQ HHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCEEEEEEECCCCCCCHHHHH VVGVLGEAHPQVRARLEVTVPRIVLAEIDLETLFVHAGQAVYRPISRFPASTQDLSIVAD HHHHHHCCCCHHEEEEEEECCEEEEECCCHHHHHHHCCHHHHHHHHHCCCCCCCEEEEEC ETVTEAQIRSVIQRSAGEYLESLVLFDRYSGPQVGEGKRSLTYHLTFRAPDRTLLDETLA CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCHHHHHHHHH KIRKKIISSLERELGATIRS HHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MRVPLSWLREFVTIDLPVEELARRLTFGGMEVAQIHRIGVEGAPLPWDPELIVVANVLEV CCCCHHHHHHHHEECCCHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEHHHHH RSHPNADRLVLADVDYGAAQPHTVVTGAPNLFQYRDQGRLTHPLKAVFAREGAQLYDGHA HCCCCCCEEEEEECCCCCCCCCEEEECCCHHHHCCCCCCCCHHHHHHHHHCCCCEECCCC EGWVITKLKGRPVRGVMSDAMLCSEKELGLSEDHEGILILPDDAPVGMPLRDYLGEVVLE CCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHCCEEEE IDLTPNFARCLSIVGVAREVAALTGAPLHIPEPQVEATGPSLIGRAAVTVLTPDLCPRFM EECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHEEECHHHHHHHH VGLAEGVKIGPSPFWMQRRLINAGMRPINNIVDISNYVMLEWGQPTHAFDADRVANRHLI HHHHCCCEECCCHHHHHHHHHHHCCCHHHHHHCCCCEEEEECCCCCCCCCHHHHCCCEEE VRLAQPGERLTTLDNRDRDLTPGDESGLTHPPLLVCDETGPLAVAGVMGGASSEVSEATT EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCHHHHHHHH NVLLEAAIWEPVQIRRTARGLKLPSEASRRFERGVDYELPPIALRRCLELMRLYAGATIA HHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCHHHH ADFIDVYSRPWQSVTIDLPPSEVRRLLGIHLDSHTIADMLSRLGFECTVVGSATVGDFAM HHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEEECCCCCCEEE LAVEPTVRVKVPSFRQDVTMTADLCEEIARIYGYDRIPDTRLADELPPPATQRAIELEEQ EEECCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCHHHHHHHHHHH VRDLMAGAGLTELITYSLIDMELVARVHPSEAIADRYLKLSNPSTPEHVYLRRSLLPSIA HHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHEECCCCCCCHHHHHHHHHHHHHH AALAMNLRERERSTVFEIGRVYLPLAQPGQDDRWLPDEPRRLAIALAGPRQPESWLSTDR HHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHCCCC DWLDFYDVKGIVELLGERLGLSDRLSFVPLTDDERFHPGRSATLVLTTQRDGRGRAVEQQ HHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCEEEEEEECCCCCCCHHHHH VVGVLGEAHPQVRARLEVTVPRIVLAEIDLETLFVHAGQAVYRPISRFPASTQDLSIVAD HHHHHHCCCCHHEEEEEEECCEEEEECCCHHHHHHHCCHHHHHHHHHCCCCCCCEEEEEC ETVTEAQIRSVIQRSAGEYLESLVLFDRYSGPQVGEGKRSLTYHLTFRAPDRTLLDETLA CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCHHHHHHHHH KIRKKIISSLERELGATIRS HHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA