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The map label for this gene is rarD [H]

Identifier: 222523510

GI number: 222523510

Start: 259541

End: 260452

Strand: Direct

Name: rarD [H]

Synonym: Chy400_0216

Alternate gene names: 222523510

Gene position: 259541-260452 (Clockwise)

Preceding gene: 222523498

Following gene: 222523515

Centisome position: 4.93

GC content: 58.22

Gene sequence:

>912_bases
ATGACCAACAAAACCACGTTACAAGGCATCAGTGCAGCTATCGCTGCATACGCGCTCTGGGGATTGCTCCCGGTCTACTG
GAAAGCGCTCAACGGGGCATCGGCCACCGAAATTCTCGCCCATCGCATGATCTGGTCGCTCCTCTTCCTGCTTGGCGTGC
TGGCGATCCGCCGGCAGTGGGAGTGGATTACGGTGATACGGCAACAGCGTCGTCTGCGGCTGACGTATCTGGCAAGTGCG
ATTCTGCTGGCGGCAAATTGGGGTATTTATGTCTGGGCAGTCCAGATCAATCGGGTCGTCGAAGCCAGTTTAGGCTATTT
TATCAACCCGCTGGTCAGTATTGCGCTGGGTGTGCTGGTCTTGCGGGAACGGTTACGTCCGGCCCAGTGGCTGGCCATCG
GTATTGCTGCTGCCGGGGTTGCCTGGCTGACCTACAGTGCCGGTGCGCTGCCCTGGATCGCATTGGCGCTGGCGTTATCG
TTTGGTCTCTACGGTCTGTTACGGAAGCAGACGCCACTCGGTTCGTTTGAGGCATTGACGGTGGAGACGTTATGGATGTT
TCCCCCCGCTCTCCTCTGGTTGAGCTGGCTGGCCGGTGCCAACGGCGGGATTCATCACGATACCGGCCTGTGGATGCTCT
TGATCAGCACCGGTGTTGTGACTGCGGCACCGCTGCTCTTTTTCGGGGCAGCAACCCGACGCATCCCGCTGACGACAATC
GGCATTTTGCAGTACCTGGCACCGACCCTTCAGCTCGTGCTGGGTGTGCTGGTCTACGGCGAACCCTTCTCAACTGCCCA
ACTGATCGGCTTTGGCGCAATCTGGACGGCACTGGCCATTTATACGCTTGATAGCTTTATCGCTGTTCGGCACTACCGGG
CGAAATTATCACAAGAGGCGATACAGCGGTAG

Upstream 100 bases:

>100_bases
CAAACATTTCATCTTGAAGTTGAATATTTTGTTAGAAAGGGGAATAAAGTCGCACTATTCTTATTTATTATAGTATTATT
TTTTGTAGTAGAGAAGTGTT

Downstream 100 bases:

>100_bases
TATTGCTGCAAGCGCTCACCGTCATCGAGATCGAAGGCCAGGGTCGGTGTGCTGATCAGGCTGGCCCGCAAGCCGAGCCG
GGCAGCCGTGCGCAGATGAT

Product: RarD protein, DMT superfamily transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 302

Protein sequence:

>303_residues
MTNKTTLQGISAAIAAYALWGLLPVYWKALNGASATEILAHRMIWSLLFLLGVLAIRRQWEWITVIRQQRRLRLTYLASA
ILLAANWGIYVWAVQINRVVEASLGYFINPLVSIALGVLVLRERLRPAQWLAIGIAAAGVAWLTYSAGALPWIALALALS
FGLYGLLRKQTPLGSFEALTVETLWMFPPALLWLSWLAGANGGIHHDTGLWMLLISTGVVTAAPLLFFGAATRRIPLTTI
GILQYLAPTLQLVLGVLVYGEPFSTAQLIGFGAIWTALAIYTLDSFIAVRHYRAKLSQEAIQR

Sequences:

>Translated_303_residues
MTNKTTLQGISAAIAAYALWGLLPVYWKALNGASATEILAHRMIWSLLFLLGVLAIRRQWEWITVIRQQRRLRLTYLASA
ILLAANWGIYVWAVQINRVVEASLGYFINPLVSIALGVLVLRERLRPAQWLAIGIAAAGVAWLTYSAGALPWIALALALS
FGLYGLLRKQTPLGSFEALTVETLWMFPPALLWLSWLAGANGGIHHDTGLWMLLISTGVVTAAPLLFFGAATRRIPLTTI
GILQYLAPTLQLVLGVLVYGEPFSTAQLIGFGAIWTALAIYTLDSFIAVRHYRAKLSQEAIQR
>Mature_302_residues
TNKTTLQGISAAIAAYALWGLLPVYWKALNGASATEILAHRMIWSLLFLLGVLAIRRQWEWITVIRQQRRLRLTYLASAI
LLAANWGIYVWAVQINRVVEASLGYFINPLVSIALGVLVLRERLRPAQWLAIGIAAAGVAWLTYSAGALPWIALALALSF
GLYGLLRKQTPLGSFEALTVETLWMFPPALLWLSWLAGANGGIHHDTGLWMLLISTGVVTAAPLLFFGAATRRIPLTTIG
ILQYLAPTLQLVLGVLVYGEPFSTAQLIGFGAIWTALAIYTLDSFIAVRHYRAKLSQEAIQR

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=293, Percent_Identity=41.296928327645, Blast_Score=228, Evalue=5e-61,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 33335; Mature: 33204

Theoretical pI: Translated: 10.59; Mature: 10.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNKTTLQGISAAIAAYALWGLLPVYWKALNGASATEILAHRMIWSLLFLLGVLAIRRQW
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
EWITVIRQQRRLRLTYLASAILLAANWGIYVWAVQINRVVEASLGYFINPLVSIALGVLV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
LRERLRPAQWLAIGIAAAGVAWLTYSAGALPWIALALALSFGLYGLLRKQTPLGSFEALT
HHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
VETLWMFPPALLWLSWLAGANGGIHHDTGLWMLLISTGVVTAAPLLFFGAATRRIPLTTI
HHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
GILQYLAPTLQLVLGVLVYGEPFSTAQLIGFGAIWTALAIYTLDSFIAVRHYRAKLSQEA
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IQR
HCC
>Mature Secondary Structure 
TNKTTLQGISAAIAAYALWGLLPVYWKALNGASATEILAHRMIWSLLFLLGVLAIRRQW
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
EWITVIRQQRRLRLTYLASAILLAANWGIYVWAVQINRVVEASLGYFINPLVSIALGVLV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
LRERLRPAQWLAIGIAAAGVAWLTYSAGALPWIALALALSFGLYGLLRKQTPLGSFEALT
HHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
VETLWMFPPALLWLSWLAGANGGIHHDTGLWMLLISTGVVTAAPLLFFGAATRRIPLTTI
HHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
GILQYLAPTLQLVLGVLVYGEPFSTAQLIGFGAIWTALAIYTLDSFIAVRHYRAKLSQEA
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IQR
HCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA