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The map label for this gene is jag [H]

Identifier: 222523426

GI number: 222523426

Start: 159134

End: 159802

Strand: Direct

Name: jag [H]

Synonym: Chy400_0129

Alternate gene names: 222523426

Gene position: 159134-159802 (Clockwise)

Preceding gene: 222523425

Following gene: 222523428

Centisome position: 3.02

GC content: 55.01

Gene sequence:

>669_bases
ATGAAGCGCATCGAGATCAGCGCACGCACCGTCGCCGAAGCTGTCGAGCTGGCGCTCGCCCAACTGGGCCGTGATCGTGA
CGAAGTTGCGATTGAAGTCCTGGACCCGGGTGAGAATGGTGATGAAGCATTGGTGCGTGTCACTGTTGTTGAAGACGAGG
AAGAGGCGCCATCAGTAGAAAAAGTGAGCGAAATTGCGCAGCGTGTTCTTGAAGATCTGCTCGAGCGCATGGATATTCAC
GCCTATGTGACGGCGGTCATTTCGCATGCCACCGGCCCAAATGGCGAACCTGAAGCAACGATCACGCTCCATGTCGAAGG
CGCTGATGAAGAAGCAATGGGTCTTTTGATCGGACGGCGCGGTGAGACTCTCCGCTCCCTACAGTTTTTACTCAATTTGC
TGGTGAGCCGCCGCGTGCAGAAATGGCCACAACTGGTGGTTGATGTTGGCAATTACCGCCAGCGCCGCCAGGAATCGCTG
GAAAGTCTGGCCCGGCGGATGGCTGAACGGGTAAGGCAGACCGGTCGGCCAATTATGCTGGAGCCAATGGCAGCTTACGA
ACGACGAATCGTTCATCTCGCCCTGCGTAACGACAAAACAATTTATACCGAAAGTTCAGGTGAGGGCGAGAATCGTAAGA
TTGTGATCTATCCCGCCAAGCATTCGTAA

Upstream 100 bases:

>100_bases
TCCGACGCACACGGAACAGCGCCCTTCACGCCAGCACCCCAATCCCCGTCGCCGTCGTTAGCAAGATTTGTAAGACGGTC
ACCATGACCGAGAGGTGTCT

Downstream 100 bases:

>100_bases
AACACGATTGATTGATGAAAGAGCCAGCGTTACCCGGCGTTGTGCCGGGTAACGCTGGCTTTATAATGCACAGTTCACAC
AGGAAACCAACCGGAATGGT

Product: single-stranded nucleic acid binding R3H domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MKRIEISARTVAEAVELALAQLGRDRDEVAIEVLDPGENGDEALVRVTVVEDEEEAPSVEKVSEIAQRVLEDLLERMDIH
AYVTAVISHATGPNGEPEATITLHVEGADEEAMGLLIGRRGETLRSLQFLLNLLVSRRVQKWPQLVVDVGNYRQRRQESL
ESLARRMAERVRQTGRPIMLEPMAAYERRIVHLALRNDKTIYTESSGEGENRKIVIYPAKHS

Sequences:

>Translated_222_residues
MKRIEISARTVAEAVELALAQLGRDRDEVAIEVLDPGENGDEALVRVTVVEDEEEAPSVEKVSEIAQRVLEDLLERMDIH
AYVTAVISHATGPNGEPEATITLHVEGADEEAMGLLIGRRGETLRSLQFLLNLLVSRRVQKWPQLVVDVGNYRQRRQESL
ESLARRMAERVRQTGRPIMLEPMAAYERRIVHLALRNDKTIYTESSGEGENRKIVIYPAKHS
>Mature_222_residues
MKRIEISARTVAEAVELALAQLGRDRDEVAIEVLDPGENGDEALVRVTVVEDEEEAPSVEKVSEIAQRVLEDLLERMDIH
AYVTAVISHATGPNGEPEATITLHVEGADEEAMGLLIGRRGETLRSLQFLLNLLVSRRVQKWPQLVVDVGNYRQRRQESL
ESLARRMAERVRQTGRPIMLEPMAAYERRIVHLALRNDKTIYTESSGEGENRKIVIYPAKHS

Specific function: Unknown

COG id: COG1847

COG function: function code R; Predicted RNA-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 R3H domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001374 [H]

Pfam domain/function: PF01424 R3H [H]

EC number: NA

Molecular weight: Translated: 24998; Mature: 24998

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: PS51061 R3H

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRIEISARTVAEAVELALAQLGRDRDEVAIEVLDPGENGDEALVRVTVVEDEEEAPSVE
CCEEEHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCEEEEEEEEECCCCCCCHH
KVSEIAQRVLEDLLERMDIHAYVTAVISHATGPNGEPEATITLHVEGADEEAMGLLIGRR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCHHHHHEECCC
GETLRSLQFLLNLLVSRRVQKWPQLVVDVGNYRQRRQESLESLARRMAERVRQTGRPIML
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
EPMAAYERRIVHLALRNDKTIYTESSGEGENRKIVIYPAKHS
CCHHHHHHHHEEEEECCCCEEEECCCCCCCCCEEEEEECCCC
>Mature Secondary Structure
MKRIEISARTVAEAVELALAQLGRDRDEVAIEVLDPGENGDEALVRVTVVEDEEEAPSVE
CCEEEHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCEEEEEEEEECCCCCCCHH
KVSEIAQRVLEDLLERMDIHAYVTAVISHATGPNGEPEATITLHVEGADEEAMGLLIGRR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCHHHHHEECCC
GETLRSLQFLLNLLVSRRVQKWPQLVVDVGNYRQRRQESLESLARRMAERVRQTGRPIML
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
EPMAAYERRIVHLALRNDKTIYTESSGEGENRKIVIYPAKHS
CCHHHHHHHHEEEEECCCCEEEECCCCCCCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10427704; 11058132 [H]