| Definition | Chloroflexus sp. Y-400-fl chromosome, complete genome. |
|---|---|
| Accession | NC_012032 |
| Length | 5,268,950 |
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The map label for this gene is atoS [C]
Identifier: 222523407
GI number: 222523407
Start: 136313
End: 138778
Strand: Direct
Name: atoS [C]
Synonym: Chy400_0109
Alternate gene names: 222523407
Gene position: 136313-138778 (Clockwise)
Preceding gene: 222523406
Following gene: 222523408
Centisome position: 2.59
GC content: 53.24
Gene sequence:
>2466_bases ATGGACATACACGAGCGATTGCGATCTCTCGAACGCGAAAATGCTCTCTTGCGCCAGCAACTCTCGATCTTGAGAGCACA GATTTCCGCCAATCTGGCCCCAAACCAGTTGCCATTCGATACGCTTTTTCACCAATTGCCGATCCCAATGGTGCTCTTTT CGCTCGATGGACTGGCAGTAGCGATGAATCAGGCCAACGCGCAACTGGTTGCTACACCCATTGATCAGGTTGTCGGCGTC TACAACATCTACAACGATCCAGCCGCGCAAAAGCACGGCTTTGTCGCTGCATTTGAGTCAGCACGACGGGGACAGATTAC CACCATGCCACCAACTCCATACAACACCGCCGAAGCCAGGCTTGAGGGTCGGGTTGTTGATCAACAGTTTTGGTCTGAAA CAACCTACTTTCCGGTCTACGATGTCGCCAATCGCCTGATACTGATTGGCGAGATCAATCGTGATGTTACCGATTGGATA CGGGTGCGCGACGAAGAGCATCGCCTCGCCATCGCCCTGCGTGATCGTGAACGTCGCTTCGCAACCCTGTTTGATCAGTT GAGTCTGGGTATTGTCGTTATCGAAGAGAGTGGGCGTATTCTCGATTGCAACCGTGCTGTCACTGCCATCCTGGGGGTTG AACGAGACGAATTGATCGGTAAGATGATCTTGCAGCGCACCCACCCCGATGATCGTGAACGTGATCTGGAACTGTGGATT GAGCTACTCAACGGCGAGCGTGACAGCTATACGATAGAGAAACGCTACTTCCACAAAGATGGTCATATTGTGTACGCTCG CATGACCTGCCTGGCAGTGCGTGATGAGAACGGCGAGATTACGTTTCTGGTACGCCTGGTGGAAGACGTATCTGCCCGGC GCGAGGCAGAGGCTGCCATCGAAACCGGTCGCCGCCTCTTGCAAGACATCATCGATCAGATACCAGCCCTCATCTTTGTC AAAGACGCAGAAGGTCGCTATCTGATGGTGAATGAGCGTTTAGCCAGCTTCTCTGGCTATCGGCCAGAGGAGATGATCGG GAAATCTGACGATGAACTCTTCGCACCTGCTCTGGCTGCCTATTATCGCGCTTTCGATCAGGAAGTGATTCGGGAACGTC GTCCCATTCAGCGCGATGATGATCGCTGGACAGCCGACGGCTTAACAGCATTTACAACTGTAAAGTTTCCTCTCTTCGAC CACGAAGGCAACCTCTACGGTGTGGCTGGTATTTCGCTCGATGTAACCGAACGACGACAGCTCGAACTGGAACGGGAACG GATCGAACAACGTCTACGTGAAGCCCAACGCCTTGAAAGTCTGGGCGTTATGGCCGGCGGTATTGCCCATGATTTCAATA ATCTGCTGGTCAGTGTGCTGGGCAATGTATCGCTCGCCTTGAATGAAGTATCCGCCGATCATTCACTCTACGACCTGCTG GTGCAGATTGAGCAGGCGGCTCTGCGTGCCACCGAATTGACCAATCATCTCCTGACATATACCGGTCGCCACCAGCCGGT TATGCAACGCATCGATTTGCGACGAGCAGTAGATGAAATGCAAACCATCCTGCGTAGCCTGGTACCACATCGCATCGAGT TGATTTTCCACCCTTCAGCAACCCCACTCCCTATCGAAGCCAATATTGCTCAGGTACGTCAGGTATTGATGAATCTGGTG ATAAATGGCGCCGAAGCAATTGATGGTGCTGGCATCGTAAGGATTACGACCGAACTCCGCGAGTTGAGTGCCACCGATAT GCAGAAGATGGAGATCGGTGCCGACCAGCCACCTGGCCGGTATGCGGCATTGATTGTGCAGGATACCGGCCACGGTATGG ATGAACTAACCAAAGCCCGGATATTCGATCCATTCTTCAGTACCAGATTTACCGGTCGTGGCCTTGGCCTGGCAGCCGTG AACGGGATTATCCGCGCTCATCGTGGTGCCCTCAAGCTCGACACTACGCTGCACGCAGGTACAACATTTACCATCTTCTG GCCACTCGCCACCGCACCTGACGTATCCGACGATCCCCCCTTGCCATCGCCATCGACTGTCACATCCCAACCAGAGACAA CACCGGGCGATGGGCGAATGGTGTTGCTGGTTGATGATGAACCGCAAGTCCGTCAGGTTGCCCAACGTATGCTTCGTCGC CTTGGTTTTACCGTTCACGAAGCTGAAAACAGCGATATAGCTCTCCAGCTTATGCAGGAATACGGATCACAGATCGTCCT GGCCTTGATCGATCTCACCATGCCGGGCATGACCGGCGATGAACTGGCAACCACGCTGCTCGAACAGTTTCCAACCTTGC GCATCATTTTAATGAGCGGTTTTTCGCAACAGGAATTGCCACCACATTTACGCACGAGTGGACGGGTCTCTTTTCTGGCG AAGCCGTTTACGTTGACCACATTGACAGCGGCAGTTACAACGGCACTGTCATCACATACGGTATAA
Upstream 100 bases:
>100_bases CGCCATACTACCAGATGATCGAGCAGTAAAGGGTAAATACTCTATCAATCTGGCCAGATAAGCGGTTGGGTAACAACGCA ATGCTCCAAAGGAGACGATC
Downstream 100 bases:
>100_bases TGAAAAGCGACGATTACCTTTCATGTGTAGACTGTTACTCATATGACAATCACGCCAATCGAACCTTCGCTCCGCCGGCA GGCCGATGTGCAGAATCAGT
Product: PAS/PAC sensor hybrid histidine kinase
Products: NA
Alternate protein names: Blue-light-activated histidine kinase; Response regulator [H]
Number of amino acids: Translated: 821; Mature: 821
Protein sequence:
>821_residues MDIHERLRSLERENALLRQQLSILRAQISANLAPNQLPFDTLFHQLPIPMVLFSLDGLAVAMNQANAQLVATPIDQVVGV YNIYNDPAAQKHGFVAAFESARRGQITTMPPTPYNTAEARLEGRVVDQQFWSETTYFPVYDVANRLILIGEINRDVTDWI RVRDEEHRLAIALRDRERRFATLFDQLSLGIVVIEESGRILDCNRAVTAILGVERDELIGKMILQRTHPDDRERDLELWI ELLNGERDSYTIEKRYFHKDGHIVYARMTCLAVRDENGEITFLVRLVEDVSARREAEAAIETGRRLLQDIIDQIPALIFV KDAEGRYLMVNERLASFSGYRPEEMIGKSDDELFAPALAAYYRAFDQEVIRERRPIQRDDDRWTADGLTAFTTVKFPLFD HEGNLYGVAGISLDVTERRQLELERERIEQRLREAQRLESLGVMAGGIAHDFNNLLVSVLGNVSLALNEVSADHSLYDLL VQIEQAALRATELTNHLLTYTGRHQPVMQRIDLRRAVDEMQTILRSLVPHRIELIFHPSATPLPIEANIAQVRQVLMNLV INGAEAIDGAGIVRITTELRELSATDMQKMEIGADQPPGRYAALIVQDTGHGMDELTKARIFDPFFSTRFTGRGLGLAAV NGIIRAHRGALKLDTTLHAGTTFTIFWPLATAPDVSDDPPLPSPSTVTSQPETTPGDGRMVLLVDDEPQVRQVAQRMLRR LGFTVHEAENSDIALQLMQEYGSQIVLALIDLTMPGMTGDELATTLLEQFPTLRIILMSGFSQQELPPHLRTSGRVSFLA KPFTLTTLTAAVTTALSSHTV
Sequences:
>Translated_821_residues MDIHERLRSLERENALLRQQLSILRAQISANLAPNQLPFDTLFHQLPIPMVLFSLDGLAVAMNQANAQLVATPIDQVVGV YNIYNDPAAQKHGFVAAFESARRGQITTMPPTPYNTAEARLEGRVVDQQFWSETTYFPVYDVANRLILIGEINRDVTDWI RVRDEEHRLAIALRDRERRFATLFDQLSLGIVVIEESGRILDCNRAVTAILGVERDELIGKMILQRTHPDDRERDLELWI ELLNGERDSYTIEKRYFHKDGHIVYARMTCLAVRDENGEITFLVRLVEDVSARREAEAAIETGRRLLQDIIDQIPALIFV KDAEGRYLMVNERLASFSGYRPEEMIGKSDDELFAPALAAYYRAFDQEVIRERRPIQRDDDRWTADGLTAFTTVKFPLFD HEGNLYGVAGISLDVTERRQLELERERIEQRLREAQRLESLGVMAGGIAHDFNNLLVSVLGNVSLALNEVSADHSLYDLL VQIEQAALRATELTNHLLTYTGRHQPVMQRIDLRRAVDEMQTILRSLVPHRIELIFHPSATPLPIEANIAQVRQVLMNLV INGAEAIDGAGIVRITTELRELSATDMQKMEIGADQPPGRYAALIVQDTGHGMDELTKARIFDPFFSTRFTGRGLGLAAV NGIIRAHRGALKLDTTLHAGTTFTIFWPLATAPDVSDDPPLPSPSTVTSQPETTPGDGRMVLLVDDEPQVRQVAQRMLRR LGFTVHEAENSDIALQLMQEYGSQIVLALIDLTMPGMTGDELATTLLEQFPTLRIILMSGFSQQELPPHLRTSGRVSFLA KPFTLTTLTAAVTTALSSHTV >Mature_821_residues MDIHERLRSLERENALLRQQLSILRAQISANLAPNQLPFDTLFHQLPIPMVLFSLDGLAVAMNQANAQLVATPIDQVVGV YNIYNDPAAQKHGFVAAFESARRGQITTMPPTPYNTAEARLEGRVVDQQFWSETTYFPVYDVANRLILIGEINRDVTDWI RVRDEEHRLAIALRDRERRFATLFDQLSLGIVVIEESGRILDCNRAVTAILGVERDELIGKMILQRTHPDDRERDLELWI ELLNGERDSYTIEKRYFHKDGHIVYARMTCLAVRDENGEITFLVRLVEDVSARREAEAAIETGRRLLQDIIDQIPALIFV KDAEGRYLMVNERLASFSGYRPEEMIGKSDDELFAPALAAYYRAFDQEVIRERRPIQRDDDRWTADGLTAFTTVKFPLFD HEGNLYGVAGISLDVTERRQLELERERIEQRLREAQRLESLGVMAGGIAHDFNNLLVSVLGNVSLALNEVSADHSLYDLL VQIEQAALRATELTNHLLTYTGRHQPVMQRIDLRRAVDEMQTILRSLVPHRIELIFHPSATPLPIEANIAQVRQVLMNLV INGAEAIDGAGIVRITTELRELSATDMQKMEIGADQPPGRYAALIVQDTGHGMDELTKARIFDPFFSTRFTGRGLGLAAV NGIIRAHRGALKLDTTLHAGTTFTIFWPLATAPDVSDDPPLPSPSTVTSQPETTPGDGRMVLLVDDEPQVRQVAQRMLRR LGFTVHEAENSDIALQLMQEYGSQIVLALIDLTMPGMTGDELATTLLEQFPTLRIILMSGFSQQELPPHLRTSGRVSFLA KPFTLTTLTAAVTTALSSHTV
Specific function: Photosensitive kinase and response regulator that is involved in increased bacterial virulence upon exposure to light [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
Organism=Escherichia coli, GI1788549, Length=387, Percent_Identity=25.0645994832041, Blast_Score=111, Evalue=2e-25, Organism=Escherichia coli, GI48994928, Length=566, Percent_Identity=23.321554770318, Blast_Score=96, Evalue=1e-20, Organism=Escherichia coli, GI1790436, Length=253, Percent_Identity=26.8774703557312, Blast_Score=91, Evalue=4e-19, Organism=Escherichia coli, GI1788381, Length=266, Percent_Identity=23.6842105263158, Blast_Score=84, Evalue=5e-17, Organism=Escherichia coli, GI87081816, Length=252, Percent_Identity=29.3650793650794, Blast_Score=79, Evalue=1e-15, Organism=Escherichia coli, GI1788713, Length=262, Percent_Identity=29.7709923664122, Blast_Score=74, Evalue=4e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR011006 - InterPro: IPR001610 - InterPro: IPR000014 - InterPro: IPR000700 - InterPro: IPR013767 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 - InterPro: IPR001789 [H]
Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS; PF00072 Response_reg [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 92265; Mature: 92265
Theoretical pI: Translated: 5.00; Mature: 5.00
Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50110 RESPONSE_REGULATORY ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDIHERLRSLERENALLRQQLSILRAQISANLAPNQLPFDTLFHQLPIPMVLFSLDGLAV CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHHHCCCCEE AMNQANAQLVATPIDQVVGVYNIYNDPAAQKHGFVAAFESARRGQITTMPPTPYNTAEAR EECCCCCEEEECCHHHHHHHHHCCCCCCHHHCCCHHHHHHCCCCEEEECCCCCCCCHHHH LEGRVVDQQFWSETTYFPVYDVANRLILIGEINRDVTDWIRVRDEEHRLAIALRDRERRF HCCEEHHHHHHCCCCCCCHHHHHCCEEEEEECCCCHHHHHHHCCCCCEEEEEEECHHHHH ATLFDQLSLGIVVIEESGRILDCNRAVTAILGVERDELIGKMILQRTHPDDRERDLELWI HHHHHHHCCCEEEEECCCCEEECCHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHH ELLNGERDSYTIEKRYFHKDGHIVYARMTCLAVRDENGEITFLVRLVEDVSARREAEAAI HHHCCCCCCEEEEHHEEECCCCEEEEEEEEEEEECCCCCEEEEHHHHHHHHHHHHHHHHH ETGRRLLQDIIDQIPALIFVKDAEGRYLMVNERLASFSGYRPEEMIGKSDDELFAPALAA HHHHHHHHHHHHCCCEEEEEECCCCCEEEEECHHHHCCCCCCHHHCCCCCCHHHHHHHHH YYRAFDQEVIRERRPIQRDDDRWTADGLTAFTTVKFPLFDHEGNLYGVAGISLDVTERRQ HHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEECCHHHH LELERERIEQRLREAQRLESLGVMAGGIAHDFNNLLVSVLGNVSLALNEVSADHSLYDLL HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHH VQIEQAALRATELTNHLLTYTGRHQPVMQRIDLRRAVDEMQTILRSLVPHRIELIFHPSA HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCC TPLPIEANIAQVRQVLMNLVINGAEAIDGAGIVRITTELRELSATDMQKMEIGADQPPGR CCCCCCCCHHHHHHHHHHHHHCCCHHCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCC YAALIVQDTGHGMDELTKARIFDPFFSTRFTGRGLGLAAVNGIIRAHRGALKLDTTLHAG EEEEEEECCCCCHHHHHHHHHCCHHHHCCCCCCCCHHHHHHHHHHHCCCCEEECCEEECC TTFTIFWPLATAPDVSDDPPLPSPSTVTSQPETTPGDGRMVLLVDDEPQVRQVAQRMLRR CEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHH LGFTVHEAENSDIALQLMQEYGSQIVLALIDLTMPGMTGDELATTLLEQFPTLRIILMSG HCCEEEECCCCHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEECC FSQQELPPHLRTSGRVSFLAKPFTLTTLTAAVTTALSSHTV CCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MDIHERLRSLERENALLRQQLSILRAQISANLAPNQLPFDTLFHQLPIPMVLFSLDGLAV CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHHHCCCCEE AMNQANAQLVATPIDQVVGVYNIYNDPAAQKHGFVAAFESARRGQITTMPPTPYNTAEAR EECCCCCEEEECCHHHHHHHHHCCCCCCHHHCCCHHHHHHCCCCEEEECCCCCCCCHHHH LEGRVVDQQFWSETTYFPVYDVANRLILIGEINRDVTDWIRVRDEEHRLAIALRDRERRF HCCEEHHHHHHCCCCCCCHHHHHCCEEEEEECCCCHHHHHHHCCCCCEEEEEEECHHHHH ATLFDQLSLGIVVIEESGRILDCNRAVTAILGVERDELIGKMILQRTHPDDRERDLELWI HHHHHHHCCCEEEEECCCCEEECCHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHH ELLNGERDSYTIEKRYFHKDGHIVYARMTCLAVRDENGEITFLVRLVEDVSARREAEAAI HHHCCCCCCEEEEHHEEECCCCEEEEEEEEEEEECCCCCEEEEHHHHHHHHHHHHHHHHH ETGRRLLQDIIDQIPALIFVKDAEGRYLMVNERLASFSGYRPEEMIGKSDDELFAPALAA HHHHHHHHHHHHCCCEEEEEECCCCCEEEEECHHHHCCCCCCHHHCCCCCCHHHHHHHHH YYRAFDQEVIRERRPIQRDDDRWTADGLTAFTTVKFPLFDHEGNLYGVAGISLDVTERRQ HHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEECCHHHH LELERERIEQRLREAQRLESLGVMAGGIAHDFNNLLVSVLGNVSLALNEVSADHSLYDLL HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHH VQIEQAALRATELTNHLLTYTGRHQPVMQRIDLRRAVDEMQTILRSLVPHRIELIFHPSA HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCC TPLPIEANIAQVRQVLMNLVINGAEAIDGAGIVRITTELRELSATDMQKMEIGADQPPGR CCCCCCCCHHHHHHHHHHHHHCCCHHCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCC YAALIVQDTGHGMDELTKARIFDPFFSTRFTGRGLGLAAVNGIIRAHRGALKLDTTLHAG EEEEEEECCCCCHHHHHHHHHCCHHHHCCCCCCCCHHHHHHHHHHHCCCCEEECCEEECC TTFTIFWPLATAPDVSDDPPLPSPSTVTSQPETTPGDGRMVLLVDDEPQVRQVAQRMLRR CEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHH LGFTVHEAENSDIALQLMQEYGSQIVLALIDLTMPGMTGDELATTLLEQFPTLRIILMSG HCCEEEECCCCHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEECC FSQQELPPHLRTSGRVSFLAKPFTLTTLTAAVTTALSSHTV CCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA