| Definition | Chloroflexus sp. Y-400-fl chromosome, complete genome. |
|---|---|
| Accession | NC_012032 |
| Length | 5,268,950 |
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The map label for this gene is 222523358
Identifier: 222523358
GI number: 222523358
Start: 62812
End: 64269
Strand: Reverse
Name: 222523358
Synonym: Chy400_0059
Alternate gene names: NA
Gene position: 64269-62812 (Counterclockwise)
Preceding gene: 222523359
Following gene: 222523357
Centisome position: 1.22
GC content: 56.17
Gene sequence:
>1458_bases ATGCCAATCGCATTTGTGATAGAAGTGCATGTTCCATATCTCCGTCATCCCGGACGTCAACCGATTGGGGAGGAGCGACT GCACGCATTCACGGCTCACACGCTTATCCCCCTGCTCGATCTCATTGGTGAATTGCAGCGCCACTCGCTCCCGCTGTCCA TCACGCTGGCCTGCTCACCGATTGCGCTGGAACAATGGCGTGATCCGGTAGTACACAAGCATTTTGTGCAGTGGCTGGAA GGGAGGATAACCCACCACCAAAACGAACTCTCTCGTTTCGAGCACGAAGGTAACCAGCATGGGGCATATCTGGCCCGTTT TTACCTCGATTGGGACCGTCAACTACTGCGTAGTTTCACCATCCGCTATCAGCGCAATCCGCTTGGCCGGCTTCAGGAGC TGGTAGCAGCCGGGCTGATTACCCCACTCTGCGTACCAGCCAGTTATGCAATCCTGCCTTTCCTTGGGCACGAGGGCATG GTTCGCGCCCAACTTGAGCACGGCTTGCTCTACATCTCGCGCTACCTCAAGCGACCGGAAGGACTCTGGCTGCCCGGTAG TGCCTGGCGTGATGGGTTAGAGCGCATTATTCTAGAACTCGATCTACGATATGTGATCGTCGATCCTTCCAATGTCCAAC TCCAACACGGTCACCTACCCGGCTGGCTTGTACCACGTCGGCTGGCTGCGATTGGGGTAGAGGCTGACCTCGCTCGCCAC ATTTGGTCGGTGGAACTGGGTTACCCTGGCGATCCGCTCTACCGCAACCCTGCCGATCCAACCGGTTATACCGCCAATGG AGCCGATGCCCCGCAGCCATACGATCCGTATGATGCGCTACGGCGTGCCCAGGAACATGCCAATCACTTCGTCGATCAAT TGCTTTTCCGATTGAGCCAGCTTCCATCAGAGACAACGCTGGTAGTACCGATAGATGCACGGCTTTGGAGCAGGAACTGG TTTGAGGGGCCTACCTGGTTGCAGGCAGTATTAACACGCTGTGCCACCGATCCCCGTCTGCGTCTGACCCAGCCGGGTAG TCTACTGCACCATCTCTCCAGCAATGATACGGTTGTCCTACAGGCTACAGCGCAGGCAGACGCATCTGCGACCTCCTGGC AATCGCCATTCACCGACCATTACCGGCAGTCATTGTATGAGGCCGAACGTCGTTTTGCCGAACTGGTGACCTACTATCCG GCTGCTGAAGGCTTGCGTGAACGAGTCTTAACCCAGGCGGCGCGTGAGCTATTGCTGGCTGAGATGAGTGACTGGCTGAT GGAGAGTGATCCCGGTTGGCAACGGTATCTTGATCGCTTTGATCACCTTCTGCTCCTTGCCCGTCAGGAATCGCTTAGTG CAACAGACCTCTTCGCACTGGAGCAGATCGAGAGCCACGACTCCATCTTTCCAGTGCTGAATTACCGTCTTTTTGGCGAA AAGCATCACAGGTCGTGA
Upstream 100 bases:
>100_bases GACGCCAACCTAGACACCCTTCCCGACACCAATTGTCGTGACACCGGTATATCCGTAGGAATTGGTTACAGATCGGCCTT CACCAACAAGCGAGAAAGCA
Downstream 100 bases:
>100_bases TCACAAATTCAGGTTGCTATGGCCGATGCAGAAACCATTCGCAGCTACGATCAACTGGCCCGTGAACAGGCAGCGTTTCA ACGGCATCTCCAGCCAACGG
Product: hypothetical protein
Products: NA
Alternate protein names: Glycoside Hydrolase Family Protein; Glycosyl Hydrolase Family; Glycosy Hydrolase Family Protein; (1-_4)-Alpha-D-Glucan Branching; Alpha-Amylase; Family; Glycogen Branching; Glycosyl Transferase/Glycoside Hydrolase-Like Protein; Glycosyl Hydrolase Family Protein
Number of amino acids: Translated: 485; Mature: 484
Protein sequence:
>485_residues MPIAFVIEVHVPYLRHPGRQPIGEERLHAFTAHTLIPLLDLIGELQRHSLPLSITLACSPIALEQWRDPVVHKHFVQWLE GRITHHQNELSRFEHEGNQHGAYLARFYLDWDRQLLRSFTIRYQRNPLGRLQELVAAGLITPLCVPASYAILPFLGHEGM VRAQLEHGLLYISRYLKRPEGLWLPGSAWRDGLERIILELDLRYVIVDPSNVQLQHGHLPGWLVPRRLAAIGVEADLARH IWSVELGYPGDPLYRNPADPTGYTANGADAPQPYDPYDALRRAQEHANHFVDQLLFRLSQLPSETTLVVPIDARLWSRNW FEGPTWLQAVLTRCATDPRLRLTQPGSLLHHLSSNDTVVLQATAQADASATSWQSPFTDHYRQSLYEAERRFAELVTYYP AAEGLRERVLTQAARELLLAEMSDWLMESDPGWQRYLDRFDHLLLLARQESLSATDLFALEQIESHDSIFPVLNYRLFGE KHHRS
Sequences:
>Translated_485_residues MPIAFVIEVHVPYLRHPGRQPIGEERLHAFTAHTLIPLLDLIGELQRHSLPLSITLACSPIALEQWRDPVVHKHFVQWLE GRITHHQNELSRFEHEGNQHGAYLARFYLDWDRQLLRSFTIRYQRNPLGRLQELVAAGLITPLCVPASYAILPFLGHEGM VRAQLEHGLLYISRYLKRPEGLWLPGSAWRDGLERIILELDLRYVIVDPSNVQLQHGHLPGWLVPRRLAAIGVEADLARH IWSVELGYPGDPLYRNPADPTGYTANGADAPQPYDPYDALRRAQEHANHFVDQLLFRLSQLPSETTLVVPIDARLWSRNW FEGPTWLQAVLTRCATDPRLRLTQPGSLLHHLSSNDTVVLQATAQADASATSWQSPFTDHYRQSLYEAERRFAELVTYYP AAEGLRERVLTQAARELLLAEMSDWLMESDPGWQRYLDRFDHLLLLARQESLSATDLFALEQIESHDSIFPVLNYRLFGE KHHRS >Mature_484_residues PIAFVIEVHVPYLRHPGRQPIGEERLHAFTAHTLIPLLDLIGELQRHSLPLSITLACSPIALEQWRDPVVHKHFVQWLEG RITHHQNELSRFEHEGNQHGAYLARFYLDWDRQLLRSFTIRYQRNPLGRLQELVAAGLITPLCVPASYAILPFLGHEGMV RAQLEHGLLYISRYLKRPEGLWLPGSAWRDGLERIILELDLRYVIVDPSNVQLQHGHLPGWLVPRRLAAIGVEADLARHI WSVELGYPGDPLYRNPADPTGYTANGADAPQPYDPYDALRRAQEHANHFVDQLLFRLSQLPSETTLVVPIDARLWSRNWF EGPTWLQAVLTRCATDPRLRLTQPGSLLHHLSSNDTVVLQATAQADASATSWQSPFTDHYRQSLYEAERRFAELVTYYPA AEGLRERVLTQAARELLLAEMSDWLMESDPGWQRYLDRFDHLLLLARQESLSATDLFALEQIESHDSIFPVLNYRLFGEK HHRS
Specific function: Unknown
COG id: COG1543
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55747; Mature: 55616
Theoretical pI: Translated: 6.54; Mature: 6.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPIAFVIEVHVPYLRHPGRQPIGEERLHAFTAHTLIPLLDLIGELQRHSLPLSITLACSP CCEEEEEEECCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC IALEQWRDPVVHKHFVQWLEGRITHHQNELSRFEHEGNQHGAYLARFYLDWDRQLLRSFT HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH IRYQRNPLGRLQELVAAGLITPLCVPASYAILPFLGHEGMVRAQLEHGLLYISRYLKRPE HHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCC GLWLPGSAWRDGLERIILELDLRYVIVDPSNVQLQHGHLPGWLVPRRLAAIGVEADLARH CCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCHHHHHHHHHHCCHHHHHHH IWSVELGYPGDPLYRNPADPTGYTANGADAPQPYDPYDALRRAQEHANHFVDQLLFRLSQ HEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH LPSETTLVVPIDARLWSRNWFEGPTWLQAVLTRCATDPRLRLTQPGSLLHHLSSNDTVVL CCCCCEEEEEECHHHHCCCCCCCHHHHHHHHHHHCCCCCEEECCCHHHHHHCCCCCEEEE QATAQADASATSWQSPFTDHYRQSLYEAERRFAELVTYYPAAEGLRERVLTQAARELLLA EEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH EMSDWLMESDPGWQRYLDRFDHLLLLARQESLSATDLFALEQIESHDSIFPVLNYRLFGE HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHCH KHHRS HHCCC >Mature Secondary Structure PIAFVIEVHVPYLRHPGRQPIGEERLHAFTAHTLIPLLDLIGELQRHSLPLSITLACSP CEEEEEEECCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC IALEQWRDPVVHKHFVQWLEGRITHHQNELSRFEHEGNQHGAYLARFYLDWDRQLLRSFT HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH IRYQRNPLGRLQELVAAGLITPLCVPASYAILPFLGHEGMVRAQLEHGLLYISRYLKRPE HHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCC GLWLPGSAWRDGLERIILELDLRYVIVDPSNVQLQHGHLPGWLVPRRLAAIGVEADLARH CCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCHHHHHHHHHHCCHHHHHHH IWSVELGYPGDPLYRNPADPTGYTANGADAPQPYDPYDALRRAQEHANHFVDQLLFRLSQ HEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH LPSETTLVVPIDARLWSRNWFEGPTWLQAVLTRCATDPRLRLTQPGSLLHHLSSNDTVVL CCCCCEEEEEECHHHHCCCCCCCHHHHHHHHHHHCCCCCEEECCCHHHHHHCCCCCEEEE QATAQADASATSWQSPFTDHYRQSLYEAERRFAELVTYYPAAEGLRERVLTQAARELLLA EEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH EMSDWLMESDPGWQRYLDRFDHLLLLARQESLSATDLFALEQIESHDSIFPVLNYRLFGE HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHCH KHHRS HHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA