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The map label for this gene is cdaR [H]

Identifier: 222095031

GI number: 222095031

Start: 1361849

End: 1362964

Strand: Reverse

Name: cdaR [H]

Synonym: BCQ_1371

Alternate gene names: 222095031

Gene position: 1362964-1361849 (Counterclockwise)

Preceding gene: 222095041

Following gene: 222095030

Centisome position: 26.14

GC content: 34.05

Gene sequence:

>1116_bases
ATGCTTTTTCCTGATTTAGCAAATAAAATTGTACGAGAAGTACGCAGACTAATTAAAGAAAATATTATTATCATTAATAT
ACAAGGCGTTATTATCGCAAGTACAGATATAGAAAGAATCGGCCAATTTCATGAAGGCGCACTCCGCTGCGCAAAACAAA
AGAAAACTGTCATTATTACAAAAGAGGATGAACGACGTTTGCAAGGCGTAAAGGCAGGTATGAATCTCCCTTTACTATTC
CATGACGAAGTAATTGGTGTCATTGGAATTACAGGCGAACCTGAAAATATTTCACAATACGGAGAAATATTACGTAAAAT
GACCGAACTACTCATCCATGAAAACTACTTTTTAGAACAACTAGAACTTGAACACCGTTCTTATGAGGCATTTGTCTTTG
ATTGGCTTCAAAATACAGACTGGTCTCCAAGCTTTCTCGATCGTGCCAAAACACTTGGTATTGATTTATATAAGAAGAAA
CAACTTATTTTGTTCTCTATCGATCAAAATGACACGATGCTTCAGCGTAAGATTTGGCAACACGTACGCAATCTATTAAC
AAAGGAGCATCTATTTGTTCGCTGGGGAAATGATCGATTCATTTTATTTACAGCCACGAACTCCAAAGAGCAAACATATC
AATTTTTAAAACGATTAAAACAAGACTGTGAAACTTTATTTTCTATTCCTTTATATATCGGGATTGGCCAATCCGTTACG
CCAAGCAATATGAATTTATCGTACGAACAAGCATTACAAGCTCTTTCCGTATCACTTGAAACGAAAAACATTGTATTTAA
TGAAGATTTACGTTTAGAAATGTGCTTACAAGATATTTCTGCGGAAACGCGGGAACAATTTCTAAAGCGCACCATCGAAA
ACTTACTATCATCGCCTGAACTTATGCACACTTTACGTTTATTTATTGATTATAACCAATCCTATAAACAAACAGCGGAG
CAATTACATATACACATTAACACATTGCATTATAGACTTAAAAAAATTGAGGAGTATACAGGACTTGATCCGAAACAATT
CAAAGACTTAAATATTTTATATTTCTCGCTCCTCTTATTAGATAATCAAACAAAAAAGAATGATAAAACAGATTAA

Upstream 100 bases:

>100_bases
TGTAAAATAACAAATAAATGTGTGGAAAGTGTGAAATTTCCCTTTCCTACTTTATTTACATATATAATGTACAACAAATA
GAATTTGAGGTGTGCCAATT

Downstream 100 bases:

>100_bases
TCTTTAGATGATTATACATAGAAAGAATCCCCCGACTTTTTTATCATTATAATGAAAGCACTGTGACAACGTTTTTTATT
ATGACTCATTACGTTAACAG

Product: transcriptional regulator; carbohydrate diacid regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 371; Mature: 371

Protein sequence:

>371_residues
MLFPDLANKIVREVRRLIKENIIIINIQGVIIASTDIERIGQFHEGALRCAKQKKTVIITKEDERRLQGVKAGMNLPLLF
HDEVIGVIGITGEPENISQYGEILRKMTELLIHENYFLEQLELEHRSYEAFVFDWLQNTDWSPSFLDRAKTLGIDLYKKK
QLILFSIDQNDTMLQRKIWQHVRNLLTKEHLFVRWGNDRFILFTATNSKEQTYQFLKRLKQDCETLFSIPLYIGIGQSVT
PSNMNLSYEQALQALSVSLETKNIVFNEDLRLEMCLQDISAETREQFLKRTIENLLSSPELMHTLRLFIDYNQSYKQTAE
QLHIHINTLHYRLKKIEEYTGLDPKQFKDLNILYFSLLLLDNQTKKNDKTD

Sequences:

>Translated_371_residues
MLFPDLANKIVREVRRLIKENIIIINIQGVIIASTDIERIGQFHEGALRCAKQKKTVIITKEDERRLQGVKAGMNLPLLF
HDEVIGVIGITGEPENISQYGEILRKMTELLIHENYFLEQLELEHRSYEAFVFDWLQNTDWSPSFLDRAKTLGIDLYKKK
QLILFSIDQNDTMLQRKIWQHVRNLLTKEHLFVRWGNDRFILFTATNSKEQTYQFLKRLKQDCETLFSIPLYIGIGQSVT
PSNMNLSYEQALQALSVSLETKNIVFNEDLRLEMCLQDISAETREQFLKRTIENLLSSPELMHTLRLFIDYNQSYKQTAE
QLHIHINTLHYRLKKIEEYTGLDPKQFKDLNILYFSLLLLDNQTKKNDKTD
>Mature_371_residues
MLFPDLANKIVREVRRLIKENIIIINIQGVIIASTDIERIGQFHEGALRCAKQKKTVIITKEDERRLQGVKAGMNLPLLF
HDEVIGVIGITGEPENISQYGEILRKMTELLIHENYFLEQLELEHRSYEAFVFDWLQNTDWSPSFLDRAKTLGIDLYKKK
QLILFSIDQNDTMLQRKIWQHVRNLLTKEHLFVRWGNDRFILFTATNSKEQTYQFLKRLKQDCETLFSIPLYIGIGQSVT
PSNMNLSYEQALQALSVSLETKNIVFNEDLRLEMCLQDISAETREQFLKRTIENLLSSPELMHTLRLFIDYNQSYKQTAE
QLHIHINTLHYRLKKIEEYTGLDPKQFKDLNILYFSLLLLDNQTKKNDKTD

Specific function: Seems To Regulate The Expression Of The Operons For The Enzymes Involved In D-Galactarate, D-Glucarate And D-Glycerate Utilization. [C]

COG id: COG3835

COG function: function code KT; Sugar diacid utilization regulator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CdaR family [H]

Homologues:

Organism=Escherichia coli, GI87081694, Length=376, Percent_Identity=30.3191489361702, Blast_Score=165, Evalue=5e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008599 [H]

Pfam domain/function: PF05651 Diacid_rec [H]

EC number: NA

Molecular weight: Translated: 43656; Mature: 43656

Theoretical pI: Translated: 6.86; Mature: 6.86

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFPDLANKIVREVRRLIKENIIIINIQGVIIASTDIERIGQFHEGALRCAKQKKTVIIT
CCCHHHHHHHHHHHHHHHHCCEEEEEECEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEE
KEDERRLQGVKAGMNLPLLFHDEVIGVIGITGEPENISQYGEILRKMTELLIHENYFLEQ
CCHHHHHHHHHCCCCCCEEEECCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LELEHRSYEAFVFDWLQNTDWSPSFLDRAKTLGIDLYKKKQLILFSIDQNDTMLQRKIWQ
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEECCEEEEEEECCCCHHHHHHHHH
HVRNLLTKEHLFVRWGNDRFILFTATNSKEQTYQFLKRLKQDCETLFSIPLYIGIGQSVT
HHHHHHHHCCEEEEECCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCHHEEECCCCCC
PSNMNLSYEQALQALSVSLETKNIVFNEDLRLEMCLQDISAETREQFLKRTIENLLSSPE
CCCCCCCHHHHHHHHHHHEECCCEEECCCCHHHHHHHHHCHHHHHHHHHHHHHHHHCCHH
LMHTLRLFIDYNQSYKQTAEQLHIHINTLHYRLKKIEEYTGLDPKQFKDLNILYFSLLLL
HHHHHHHHHHCCHHHHHHHHHHEEHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHH
DNQTKKNDKTD
CCCCCCCCCCC
>Mature Secondary Structure
MLFPDLANKIVREVRRLIKENIIIINIQGVIIASTDIERIGQFHEGALRCAKQKKTVIIT
CCCHHHHHHHHHHHHHHHHCCEEEEEECEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEE
KEDERRLQGVKAGMNLPLLFHDEVIGVIGITGEPENISQYGEILRKMTELLIHENYFLEQ
CCHHHHHHHHHCCCCCCEEEECCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LELEHRSYEAFVFDWLQNTDWSPSFLDRAKTLGIDLYKKKQLILFSIDQNDTMLQRKIWQ
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEECCEEEEEEECCCCHHHHHHHHH
HVRNLLTKEHLFVRWGNDRFILFTATNSKEQTYQFLKRLKQDCETLFSIPLYIGIGQSVT
HHHHHHHHCCEEEEECCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCHHEEECCCCCC
PSNMNLSYEQALQALSVSLETKNIVFNEDLRLEMCLQDISAETREQFLKRTIENLLSSPE
CCCCCCCHHHHHHHHHHHEECCCEEECCCCHHHHHHHHHCHHHHHHHHHHHHHHHHCCHH
LMHTLRLFIDYNQSYKQTAEQLHIHINTLHYRLKKIEEYTGLDPKQFKDLNILYFSLLLL
HHHHHHHHHHCCHHHHHHHHHHEEHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHH
DNQTKKNDKTD
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]