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The map label for this gene is sigM [H]

Identifier: 222094839

GI number: 222094839

Start: 1167285

End: 1167770

Strand: Reverse

Name: sigM [H]

Synonym: BCQ_1177

Alternate gene names: 222094839

Gene position: 1167770-1167285 (Counterclockwise)

Preceding gene: 222094842

Following gene: 222094838

Centisome position: 22.4

GC content: 36.63

Gene sequence:

>486_bases
GTGAAACGTAAACAATCATTAGAAGAAATTTATTCAGAACATATGCAAGATTTATTTCGCTATCTTCTCTCCCTAACCGG
AGATTCCCATTTTGCTGAAGATCTCATGCAAGAAACCTTTTACCGCATGCTCGTCCATATTGACTATTACAAAGGCGAAG
AAATTAGACCGTGGTTATTTACAATTGCCTACAACGCCTTTATCGATTGGTATCGAAAAGAGAAAAAATATAAAACAACT
ACAGTGGAAGAATTCCATTTACCAAACGTGCCAAGTACAGAGCACTCTTATTTCATAAAACATGAGATTGCTAGTTGGTT
AGAAGGTTTATCTTCTCTTCCGCTTGAAAGACGAAATGTTCTGTTACTACGAGATTACTACGGATTCTCATATAAAGAAA
TAGCAGAGATGACCGGTCTCTCACTAGCGAAAGTGAAAATTGAATTACACCGTGGTCGAAAAGAAATGAAAAGCATAAAG
GAGTGA

Upstream 100 bases:

>100_bases
AGAATCTTATCCAATTCTTGACGTTTTTTACTATAATTCCATAAAAATTGTAACTTTTTTATATGTTTTTCGTTGTTATG
TGTGAAGGGAGGGAAATGTA

Downstream 100 bases:

>100_bases
TACGGATGGGTTGTACAGAATTTAAAAAACTATGGGAGAAGTACGAAAACGGAACGCTCATGCATGATGAACAGAAACTG
TTAGAAAGTCATATTGAGAC

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 161; Mature: 161

Protein sequence:

>161_residues
MKRKQSLEEIYSEHMQDLFRYLLSLTGDSHFAEDLMQETFYRMLVHIDYYKGEEIRPWLFTIAYNAFIDWYRKEKKYKTT
TVEEFHLPNVPSTEHSYFIKHEIASWLEGLSSLPLERRNVLLLRDYYGFSYKEIAEMTGLSLAKVKIELHRGRKEMKSIK
E

Sequences:

>Translated_161_residues
MKRKQSLEEIYSEHMQDLFRYLLSLTGDSHFAEDLMQETFYRMLVHIDYYKGEEIRPWLFTIAYNAFIDWYRKEKKYKTT
TVEEFHLPNVPSTEHSYFIKHEIASWLEGLSSLPLERRNVLLLRDYYGFSYKEIAEMTGLSLAKVKIELHRGRKEMKSIK
E
>Mature_161_residues
MKRKQSLEEIYSEHMQDLFRYLLSLTGDSHFAEDLMQETFYRMLVHIDYYKGEEIRPWLFTIAYNAFIDWYRKEKKYKTT
TVEEFHLPNVPSTEHSYFIKHEIASWLEGLSSLPLERRNVLLLRDYYGFSYKEIAEMTGLSLAKVKIELHRGRKEMKSIK
E

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor may be involved in the maintenance of membrane and cell wall integrity in response to salt, acid and e

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014296
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 19475; Mature: 19475

Theoretical pI: Translated: 7.26; Mature: 7.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRKQSLEEIYSEHMQDLFRYLLSLTGDSHFAEDLMQETFYRMLVHIDYYKGEEIRPWLF
CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
TIAYNAFIDWYRKEKKYKTTTVEEFHLPNVPSTEHSYFIKHEIASWLEGLSSLPLERRNV
HHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCE
LLLRDYYGFSYKEIAEMTGLSLAKVKIELHRGRKEMKSIKE
EEEECCCCCCHHHHHHHHCCHHHHHHHHHHHCHHHHHHHCC
>Mature Secondary Structure
MKRKQSLEEIYSEHMQDLFRYLLSLTGDSHFAEDLMQETFYRMLVHIDYYKGEEIRPWLF
CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
TIAYNAFIDWYRKEKKYKTTTVEEFHLPNVPSTEHSYFIKHEIASWLEGLSSLPLERRNV
HHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCE
LLLRDYYGFSYKEIAEMTGLSLAKVKIELHRGRKEMKSIKE
EEEECCCCCCHHHHHHHHCCHHHHHHHHHHHCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377; 12775685; 10216858 [H]