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The map label for this gene is rbsD [H]

Identifier: 222094420

GI number: 222094420

Start: 733401

End: 733796

Strand: Direct

Name: rbsD [H]

Synonym: BCQ_0734

Alternate gene names: 222094420

Gene position: 733401-733796 (Clockwise)

Preceding gene: 222094419

Following gene: 222094421

Centisome position: 14.07

GC content: 37.63

Gene sequence:

>396_bases
ATGAAAAAGCACGGCGTATTAAACAGTGAGATTGCAGCAGTGCTTGCTTCACTTGGACATACGGATACGATTGTAATCGC
TGATTGCGGTTTACCAATTCCTGACGGAGTAAAGAGAATTGATCTAGCTGTTGAAATAGGAAAACCTAGCTTTTTAGATG
TATTGCAAGTGGTAGCGGATGATATGGCAATTGAAAAAGTGACGTTAGCAGAAGAAGTCATTAACAACAATGCGGAAGTA
AATAAAGAAATCGAACTAAAATTAATAGAACCAGCGTTTGAATATGTATCTCATGAACAATTTAAAGAGCATACAAAGAA
AGCGAAGGCCATTATTCGTACAGGCGAGGCTACGCCTTATGCCAATGTAATTTTACATGCAGGCGTTATTTTTTAA

Upstream 100 bases:

>100_bases
GTTTTGCGAATATTGCTGGTGGTCTTTCTGTAACGAAGCTTGGAGCACAAGGCGGTATGCCAACGAGAGATAGAGTACGT
GAAGTGCAGGTGATTGTCGG

Downstream 100 bases:

>100_bases
TAAAGGGAAGTGATGGGAATGCGTATTGAAATGAAAAATATTTCAAAGGCGTTCAATGGAAATCCTGTTTTGAAGAATGC
ACAATTTATGATTGAAACAG

Product: d-ribose pyranase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 131; Mature: 131

Protein sequence:

>131_residues
MKKHGVLNSEIAAVLASLGHTDTIVIADCGLPIPDGVKRIDLAVEIGKPSFLDVLQVVADDMAIEKVTLAEEVINNNAEV
NKEIELKLIEPAFEYVSHEQFKEHTKKAKAIIRTGEATPYANVILHAGVIF

Sequences:

>Translated_131_residues
MKKHGVLNSEIAAVLASLGHTDTIVIADCGLPIPDGVKRIDLAVEIGKPSFLDVLQVVADDMAIEKVTLAEEVINNNAEV
NKEIELKLIEPAFEYVSHEQFKEHTKKAKAIIRTGEATPYANVILHAGVIF
>Mature_131_residues
MKKHGVLNSEIAAVLASLGHTDTIVIADCGLPIPDGVKRIDLAVEIGKPSFLDVLQVVADDMAIEKVTLAEEVINNNAEV
NKEIELKLIEPAFEYVSHEQFKEHTKKAKAIIRTGEATPYANVILHAGVIF

Specific function: Catalyzes the interconversion of beta-pyran and beta- furan forms of D-ribose [H]

COG id: COG1869

COG function: function code G; ABC-type ribose transport system, auxiliary component

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbsD / fucU family. RbsD subfamily [H]

Homologues:

Organism=Escherichia coli, GI87082327, Length=139, Percent_Identity=45.3237410071942, Blast_Score=132, Evalue=6e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023064
- InterPro:   IPR007721 [H]

Pfam domain/function: PF05025 RbsD_FucU [H]

EC number: NA

Molecular weight: Translated: 14255; Mature: 14255

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKHGVLNSEIAAVLASLGHTDTIVIADCGLPIPDGVKRIDLAVEIGKPSFLDVLQVVAD
CCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCHHHHHHHHHHH
DMAIEKVTLAEEVINNNAEVNKEIELKLIEPAFEYVSHEQFKEHTKKAKAIIRTGEATPY
HHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
ANVILHAGVIF
HHHHHHCCCCC
>Mature Secondary Structure
MKKHGVLNSEIAAVLASLGHTDTIVIADCGLPIPDGVKRIDLAVEIGKPSFLDVLQVVAD
CCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCHHHHHHHHHHH
DMAIEKVTLAEEVINNNAEVNKEIELKLIEPAFEYVSHEQFKEHTKKAKAIIRTGEATPY
HHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
ANVILHAGVIF
HHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA