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The map label for this gene is rpoD [C]

Identifier: 222094400

GI number: 222094400

Start: 712153

End: 712710

Strand: Direct

Name: rpoD [C]

Synonym: BCQ_0714

Alternate gene names: 222094400

Gene position: 712153-712710 (Clockwise)

Preceding gene: 222094399

Following gene: 222094401

Centisome position: 13.66

GC content: 33.33

Gene sequence:

>558_bases
ATGAAAGTTACAAACAACGATTATGAAAAGATGGAAGAGCTATACGAGTTGTACGAACAAAAGGTTTATTATGTAGCTTA
TTCTATTTTAAATAATATTCAGCAGGCAGAAGATGCAGTTCAAGAGACGTTTATTACTCTTTATAAGAACTTGGAAAAGC
TCCATAGCTTGAGTACTGAAGAGCTTAAACGCTACATTTTGAGGATCGCGAAAAACAAGGCGATTGATAGTTACCGGAAA
AATAAACGACATGAAACATTTTTAGAAGAATATGAAAGAGAATCGATAGAAGCAGTAGATGAAAATATTGAAGAGTGGGA
AAAACGTAAAATGTCTGAGGTTCAAATTGATGCATTACTAAAAGAGTTAAATGAGTCTAATAGACAGGTGTTTAAGTATA
AAGTCTTCTATAACTTAACGTATCAAGAAATTTCAAGTGTTATGGGGATAACGGAAGTCAATGTCCGCAAGCAGTTTGAG
CGTGCTCGAAAAAGAGTCCAAAATATGATAGGAGGTATACAACATGACGAATTCAAAGAATTCCAAAGAAATATATGA

Upstream 100 bases:

>100_bases
GCTTTTGTTTATTCTATTATTAAATTTTATCTATAAAAAGATTTTGCAGTGTCACAAAGTATGGTGCTCATTCGTTATAT
AGAGTGAGAGGAGGAATTAT

Downstream 100 bases:

>100_bases
ACTTGCTGAAAAGATTGCTTTAGATGATTTTGATAAACTCGAAGAACAACATGAATTTTCACATACATATACGCGCAAAA
AGAAATTGTTTATGGAGGAA

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-70 Factor ECF Subfamily; RNA Polymerase Sigma-24 Subunit ECF Subfamily; Sigma-70 Family RNA Polymerase Sigma Factor; ECF Subfamily RNA Polymerase Sigma-24 Subunit

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MKVTNNDYEKMEELYELYEQKVYYVAYSILNNIQQAEDAVQETFITLYKNLEKLHSLSTEELKRYILRIAKNKAIDSYRK
NKRHETFLEEYERESIEAVDENIEEWEKRKMSEVQIDALLKELNESNRQVFKYKVFYNLTYQEISSVMGITEVNVRKQFE
RARKRVQNMIGGIQHDEFKEFQRNI

Sequences:

>Translated_185_residues
MKVTNNDYEKMEELYELYEQKVYYVAYSILNNIQQAEDAVQETFITLYKNLEKLHSLSTEELKRYILRIAKNKAIDSYRK
NKRHETFLEEYERESIEAVDENIEEWEKRKMSEVQIDALLKELNESNRQVFKYKVFYNLTYQEISSVMGITEVNVRKQFE
RARKRVQNMIGGIQHDEFKEFQRNI
>Mature_185_residues
MKVTNNDYEKMEELYELYEQKVYYVAYSILNNIQQAEDAVQETFITLYKNLEKLHSLSTEELKRYILRIAKNKAIDSYRK
NKRHETFLEEYERESIEAVDENIEEWEKRKMSEVQIDALLKELNESNRQVFKYKVFYNLTYQEISSVMGITEVNVRKQFE
RARKRVQNMIGGIQHDEFKEFQRNI

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Regulates The Fec Genes For Iron Dicitrate Transport (Probable). [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22507; Mature: 22507

Theoretical pI: Translated: 5.49; Mature: 5.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVTNNDYEKMEELYELYEQKVYYVAYSILNNIQQAEDAVQETFITLYKNLEKLHSLSTE
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
ELKRYILRIAKNKAIDSYRKNKRHETFLEEYERESIEAVDENIEEWEKRKMSEVQIDALL
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KELNESNRQVFKYKVFYNLTYQEISSVMGITEVNVRKQFERARKRVQNMIGGIQHDEFKE
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
FQRNI
HHHCC
>Mature Secondary Structure
MKVTNNDYEKMEELYELYEQKVYYVAYSILNNIQQAEDAVQETFITLYKNLEKLHSLSTE
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
ELKRYILRIAKNKAIDSYRKNKRHETFLEEYERESIEAVDENIEEWEKRKMSEVQIDALL
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KELNESNRQVFKYKVFYNLTYQEISSVMGITEVNVRKQFERARKRVQNMIGGIQHDEFKE
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
FQRNI
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA