Click here to switch to the map view.

The map label for this gene is jag [H]

Identifier: 221232757

GI number: 221232757

Start: 2003055

End: 2004041

Strand: Reverse

Name: jag [H]

Synonym: SPN23F_20620

Alternate gene names: 221232757

Gene position: 2004041-2003055 (Counterclockwise)

Preceding gene: 221232758

Following gene: 221232756

Centisome position: 90.22

GC content: 39.01

Gene sequence:

>987_bases
ATGGTAGTATTTACAGGTTCAACTGTTGAAGAAGCAATCCAGAAAGGATTGAAAGAATTAGATATTCCAAGAATGAAGGC
TCATATCAAAGTCATTTCTAGGGAGAAAAAAGGCTTTCTTGGTCTATTTGGTAAAAAACCAGCCCAAGTGGATATTGAAG
CGATTAGTGAAACGACTGTTGTTAAAGCAAATCAACAGGTAGTAAAAGGCGTTCCGAAAAAAATCAATGATTTGAACGAG
CCTGTGAAGACGGTTAGTGAAGAAACCGTTGACCTTGGTCATGTGGTTGATGCTATTAAAAAAATAGAGGAAGAAGGTCA
AGGTATTTCTGATGAAGTCAAGGCTGAAATCTTAAAACATGAAAGACATGCCAGCACTATCTTAGAAGAAACTGGTCACA
TTGAGATTTTAAATGAACTTCAAATCGAGGAAGCGATGAGGGAAGAAGCAGGCGCTGATGACCTTGAAACTGAGCAAGAT
CAAACTGAAAATCAAGACTTGAAAGAGATGGGCTTGAAGGTCGAGCAAAGTTATGATATTGCCCAGGTGGCTACGGATGT
GACTGCTTATGTTCAAACGATTATTGATGACATGGATGTTGAGGCTACACTTTCAAATGATTATAACCGTCGTAGCATCA
ATTTGCAAATTGATACTAACGAACCAGGTCGTATTATCGGCTACCATGGTAAAGTCTTGAAGGCCTTGCAACTGTTGGCT
CAAAATTATCTTTACAACTGCTATTCAAGAACCTTCTATATCACTATTAATGTCAATGATTATGTTGAACACCGTGCAGA
AGTCTTGCAGACCTATGCGCAAAAATTGGCGATTCGTGTTTTAGAAGAAGGACGTAGTCATCAAACAGATCCAATGTCGA
ATAGTGAACGCAAGATTATCCACCGTATTATTTCACGTATGGATGGCGTGACCAGTTACTCTGAAGGTGATGAGCCAAAT
CGCTATGTCGTTGTAGATACAGAATAA

Upstream 100 bases:

>100_bases
GCGCGAGGCCGTAGTACAGGCACAAAAAGATTTGGAAAATAGAAAAAGAAAAGCCAAGAAAAAGGCTCAGAAAACGAAAT
AAATAAGGAGGAATCTGGTA

Downstream 100 bases:

>100_bases
GTAAAATCAGGGTTGACCTGATTTTTTGCTAGCTAGAGGAGGTTAAACTGATGTTGAATAAGATAAGAGACTATCTAGAC
TTTTCTGGTTTGCAGTACCG

Product: ssDNA-binding protein

Products: NA

Alternate protein names: SpoIIIJ-associated protein [H]

Number of amino acids: Translated: 328; Mature: 328

Protein sequence:

>328_residues
MVVFTGSTVEEAIQKGLKELDIPRMKAHIKVISREKKGFLGLFGKKPAQVDIEAISETTVVKANQQVVKGVPKKINDLNE
PVKTVSEETVDLGHVVDAIKKIEEEGQGISDEVKAEILKHERHASTILEETGHIEILNELQIEEAMREEAGADDLETEQD
QTENQDLKEMGLKVEQSYDIAQVATDVTAYVQTIIDDMDVEATLSNDYNRRSINLQIDTNEPGRIIGYHGKVLKALQLLA
QNYLYNCYSRTFYITINVNDYVEHRAEVLQTYAQKLAIRVLEEGRSHQTDPMSNSERKIIHRIISRMDGVTSYSEGDEPN
RYVVVDTE

Sequences:

>Translated_328_residues
MVVFTGSTVEEAIQKGLKELDIPRMKAHIKVISREKKGFLGLFGKKPAQVDIEAISETTVVKANQQVVKGVPKKINDLNE
PVKTVSEETVDLGHVVDAIKKIEEEGQGISDEVKAEILKHERHASTILEETGHIEILNELQIEEAMREEAGADDLETEQD
QTENQDLKEMGLKVEQSYDIAQVATDVTAYVQTIIDDMDVEATLSNDYNRRSINLQIDTNEPGRIIGYHGKVLKALQLLA
QNYLYNCYSRTFYITINVNDYVEHRAEVLQTYAQKLAIRVLEEGRSHQTDPMSNSERKIIHRIISRMDGVTSYSEGDEPN
RYVVVDTE
>Mature_328_residues
MVVFTGSTVEEAIQKGLKELDIPRMKAHIKVISREKKGFLGLFGKKPAQVDIEAISETTVVKANQQVVKGVPKKINDLNE
PVKTVSEETVDLGHVVDAIKKIEEEGQGISDEVKAEILKHERHASTILEETGHIEILNELQIEEAMREEAGADDLETEQD
QTENQDLKEMGLKVEQSYDIAQVATDVTAYVQTIIDDMDVEATLSNDYNRRSINLQIDTNEPGRIIGYHGKVLKALQLLA
QNYLYNCYSRTFYITINVNDYVEHRAEVLQTYAQKLAIRVLEEGRSHQTDPMSNSERKIIHRIISRMDGVTSYSEGDEPN
RYVVVDTE

Specific function: Unknown

COG id: COG1847

COG function: function code R; Predicted RNA-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 R3H domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004087
- InterPro:   IPR015946
- InterPro:   IPR001374 [H]

Pfam domain/function: PF01424 R3H [H]

EC number: NA

Molecular weight: Translated: 37071; Mature: 37071

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: PS51061 R3H

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVVFTGSTVEEAIQKGLKELDIPRMKAHIKVISREKKGFLGLFGKKPAQVDIEAISETTV
CEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEECCCCCCCCEEHHHHCCHHH
VKANQQVVKGVPKKINDLNEPVKTVSEETVDLGHVVDAIKKIEEEGQGISDEVKAEILKH
EECCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
ERHASTILEETGHIEILNELQIEEAMREEAGADDLETEQDQTENQDLKEMGLKVEQSYDI
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCHHHHCCCHHCCCCH
AQVATDVTAYVQTIIDDMDVEATLSNDYNRRSINLQIDTNEPGRIIGYHGKVLKALQLLA
HHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEEEEEEECCCCCCEEECCHHHHHHHHHHH
QNYLYNCYSRTFYITINVNDYVEHRAEVLQTYAQKLAIRVLEEGRSHQTDPMSNSERKII
HHHHHHHHCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
HRIISRMDGVTSYSEGDEPNRYVVVDTE
HHHHHHHCCCCCCCCCCCCCEEEEEECC
>Mature Secondary Structure
MVVFTGSTVEEAIQKGLKELDIPRMKAHIKVISREKKGFLGLFGKKPAQVDIEAISETTV
CEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEECCCCCCCCEEHHHHCCHHH
VKANQQVVKGVPKKINDLNEPVKTVSEETVDLGHVVDAIKKIEEEGQGISDEVKAEILKH
EECCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
ERHASTILEETGHIEILNELQIEEAMREEAGADDLETEQDQTENQDLKEMGLKVEQSYDI
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCHHHHCCCHHCCCCH
AQVATDVTAYVQTIIDDMDVEATLSNDYNRRSINLQIDTNEPGRIIGYHGKVLKALQLLA
HHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEEEEEEECCCCCCEEECCHHHHHHHHHHH
QNYLYNCYSRTFYITINVNDYVEHRAEVLQTYAQKLAIRVLEEGRSHQTDPMSNSERKII
HHHHHHHHCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
HRIISRMDGVTSYSEGDEPNRYVVVDTE
HHHHHHHCCCCCCCCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1487728; 1552862; 7584024; 9384377 [H]