Click here to switch to the map view.

The map label for this gene is clpX [H]

Identifier: 221232330

GI number: 221232330

Start: 1530763

End: 1531995

Strand: Reverse

Name: clpX [H]

Synonym: SPN23F_15860

Alternate gene names: 221232330

Gene position: 1531995-1530763 (Counterclockwise)

Preceding gene: 221232331

Following gene: 221232329

Centisome position: 68.97

GC content: 43.07

Gene sequence:

>1233_bases
ATGTCTACAAATAGAAAAAATGATATGATGGTTTATTGCTCATTTTGTGGCAAAAGCCAAGAAGAAGTACAAAAAATAAT
CGCTGGCAACAATGCCTTTATTTGTAATGAATGCGTGGAGCTAGCTCAAGAAATTATTCGAGAAGAATTGGTTGAGGAAG
TCTTGGCAGACTTGTCTGAGGTACCAAAACCAATCGAACTCCTCCATATCTTGAACCACTATGTAATCGGTCAAGATCGT
GCCAAGCGTGCCTTGGCAGTGGCGGTTTATAATCATTACAAACGCATCAATTTCCACGATACACGCGAAGAGTCAGAAGA
TGTGGATTTGCAGAAGTCAAACATCTTGATGATTGGCCCAACTGGTTCAGGGAAAACTTTCCTTGCTCAGACCTTGGCTA
AGAGCTTGAATGTACCTTTTGCGATTGCGGATGCGACAGCTCTGACGGAGGCTGGTTATGTAGGTGAGGATGTGGAAAAT
ATCCTCCTCAAACTCTTGCAGGCTGCTGACTTTAACATTGAGCGTGCAGAACGTGGGATTATCTACGTGGATGAAATTGA
CAAGATTGCTAAAAAGAGCGAGAATGTATCGATCACACGTGATGTTTCTGGTGAAGGGGTGCAACAAGCCCTCCTCAAGA
TTATCGAGGGAACCGTCGCAAGCGTACCTCCTCAAGGTGGTCGCAAGCATCCACAACAAGAGATGATTCAAGTGGATACT
AAAAATATCCTCTTTATCGTGGGTGGTGCCTTTGATGGCATTGAAGAAATCGTCAAACAACGTCTTGGAGAAAAAGTCAT
CGGATTTGGTCAAAATAACAAGGCGATTGATGAAAACAGCTCTTACATGCAAGAAATCATCGCAGAGGATATTCAAAAAT
TTGGTATTATCCCTGAGTTAATTGGACGCTTGCCTGTTTTTGCTGCTCTTGAGCAATTGACGGTCGATGACTTGGTTCGC
ATCTTGAAAGAGCCAAGAAATGCCTTGGTCAAACAGTACCAAACCTTGCTTTCTTATGATGATGTCGAGTTGGAATTTGA
CGACGAAGCCCTACAAGAGATTGCTAATAAAGCCATCGAACGGAAGACAGGGGCGCGTGGACTTCGCTCTATTATCGAAG
AAACAATGCTAGATGTCATGTTTGAAGTACCGAGTCAGGAAAATGTGAAATTGGTCCGCATCACTAAAGAAGCTGTTGAT
GGAACGGATAAACCAATCCTAGAAACAGCCTAG

Upstream 100 bases:

>100_bases
CTCCTTTGGTTAAATGCCTTTACCAATCTGGTCAATAGTATTCATGCTTTTTACATGACCTTATTTTAGATAGAATGACA
GTATAGAATGGAAGGAAATC

Downstream 100 bases:

>100_bases
AGGTGACTATGGAACTGAATACACACAATGCTGAAATCTTGCTCAGTGCGGCTAATAAGTCCCACTATCCGCAGGATGAA
CTGCCAGAGATCGCTCTTGC

Product: ATP-dependent protease ATP-binding subunit ClpX

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 410; Mature: 409

Protein sequence:

>410_residues
MSTNRKNDMMVYCSFCGKSQEEVQKIIAGNNAFICNECVELAQEIIREELVEEVLADLSEVPKPIELLHILNHYVIGQDR
AKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQAADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIPELIGRLPVFAALEQLTVDDLVR
ILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKAIERKTGARGLRSIIEETMLDVMFEVPSQENVKLVRITKEAVD
GTDKPILETA

Sequences:

>Translated_410_residues
MSTNRKNDMMVYCSFCGKSQEEVQKIIAGNNAFICNECVELAQEIIREELVEEVLADLSEVPKPIELLHILNHYVIGQDR
AKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQAADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIPELIGRLPVFAALEQLTVDDLVR
ILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKAIERKTGARGLRSIIEETMLDVMFEVPSQENVKLVRITKEAVD
GTDKPILETA
>Mature_409_residues
STNRKNDMMVYCSFCGKSQEEVQKIIAGNNAFICNECVELAQEIIREELVEEVLADLSEVPKPIELLHILNHYVIGQDRA
KRALAVAVYNHYKRINFHDTREESEDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENI
LLKLLQAADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDTK
NILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIPELIGRLPVFAALEQLTVDDLVRI
LKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKAIERKTGARGLRSIIEETMLDVMFEVPSQENVKLVRITKEAVDG
TDKPILETA

Specific function: ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP [H]

COG id: COG1219

COG function: function code O; ATP-dependent protease Clp, ATPase subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ClpX chaperone family [H]

Homologues:

Organism=Homo sapiens, GI7242140, Length=324, Percent_Identity=48.7654320987654, Blast_Score=308, Evalue=7e-84,
Organism=Escherichia coli, GI1786642, Length=415, Percent_Identity=59.0361445783133, Blast_Score=488, Evalue=1e-139,
Organism=Escherichia coli, GI1790366, Length=211, Percent_Identity=33.175355450237, Blast_Score=95, Evalue=9e-21,
Organism=Caenorhabditis elegans, GI71982905, Length=320, Percent_Identity=45.3125, Blast_Score=281, Evalue=5e-76,
Organism=Caenorhabditis elegans, GI71982908, Length=320, Percent_Identity=45.3125, Blast_Score=280, Evalue=1e-75,
Organism=Caenorhabditis elegans, GI71988663, Length=403, Percent_Identity=37.2208436724566, Blast_Score=243, Evalue=1e-64,
Organism=Caenorhabditis elegans, GI71988660, Length=253, Percent_Identity=39.1304347826087, Blast_Score=172, Evalue=2e-43,
Organism=Saccharomyces cerevisiae, GI6319704, Length=430, Percent_Identity=39.5348837209302, Blast_Score=266, Evalue=6e-72,
Organism=Drosophila melanogaster, GI24648289, Length=320, Percent_Identity=48.75, Blast_Score=309, Evalue=3e-84,
Organism=Drosophila melanogaster, GI24648291, Length=320, Percent_Identity=48.75, Blast_Score=309, Evalue=3e-84,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR013093
- InterPro:   IPR019489
- InterPro:   IPR004487
- InterPro:   IPR010603 [H]

Pfam domain/function: PF07724 AAA_2; PF10431 ClpB_D2-small; PF06689 zf-C4_ClpX [H]

EC number: NA

Molecular weight: Translated: 45714; Mature: 45583

Theoretical pI: Translated: 4.46; Mature: 4.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTNRKNDMMVYCSFCGKSQEEVQKIIAGNNAFICNECVELAQEIIREELVEEVLADLSE
CCCCCCCCEEEEEECCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VPKPIELLHILNHYVIGQDRAKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILMIGP
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEC
TGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAERGI
CCCCHHHHHHHHHHHCCCCEEEECHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHCCE
IYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
EEHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCC
KNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIPEL
CCEEEEECCCHHHHHHHHHHHHCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHH
IGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKAIE
HHHCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHH
RKTGARGLRSIIEETMLDVMFEVPSQENVKLVRITKEAVDGTDKPILETA
HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHCCCCCCCCCCC
>Mature Secondary Structure 
STNRKNDMMVYCSFCGKSQEEVQKIIAGNNAFICNECVELAQEIIREELVEEVLADLSE
CCCCCCCEEEEEECCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VPKPIELLHILNHYVIGQDRAKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILMIGP
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEC
TGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENILLKLLQAADFNIERAERGI
CCCCHHHHHHHHHHHCCCCEEEECHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHCCE
IYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
EEHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCC
KNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIPEL
CCEEEEECCCHHHHHHHHHHHHCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHH
IGRLPVFAALEQLTVDDLVRILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKAIE
HHHCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHH
RKTGARGLRSIIEETMLDVMFEVPSQENVKLVRITKEAVDGTDKPILETA
HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA