Click here to switch to the map view.

The map label for this gene is whiA [H]

Identifier: 221232325

GI number: 221232325

Start: 1526952

End: 1527863

Strand: Reverse

Name: whiA [H]

Synonym: SPN23F_15810

Alternate gene names: 221232325

Gene position: 1527863-1526952 (Counterclockwise)

Preceding gene: 221232326

Following gene: 221232320

Centisome position: 68.78

GC content: 45.5

Gene sequence:

>912_bases
ATGAGTTTCACAGTAGCAGTAAAAGAAGAAATCCTGGGCCAACACCATCTGAGCCGGCATGAATTATCTGCCATTATCAA
AATGTCTGGTAGCATCGGTCTCTCGACTTCGGGCTTGACTTTGTCAGTTGTGACAGAAAATGCCAAACTGGCCCGTCACC
TCTATGAGTCCTTTCTCCATTTCTATGAAATCAAATCTGAAATTCGTCACCACCAACGGAGCAATCTTCGCAAGAATCGC
GTCTATACCGTTTTTACAGATGAAAAGGTGCAGGATTTGTTAAGTGATTTGCACTTGGCAGACTCTTTCTTTGGCCTGGA
AACAGGTATTGATGAGGCGATTTTATCGGACGAGGAAGCAGGTCGTGCCTATCTCTGTGGCGCTTTCTTGGCAAATGGGA
GCATTCGTGACCCTGAGTCAGGCAAGTACCAGTTGGAAATCAGTTCTGTTTATCTGGACCACGCGCAAGGAATTGCCTCC
CTTCTCCAACAGTTTTTACTGGATGCCAAGGTGCTTGAGCGCAAGAAGGGGGCTGTGACCTATCTCCAGCGAGCAGAAGA
CATTATGGACTTCTTGATAGTAATAGGAGCCATGCAGGCACGTGATGATTTTGAGCGGGTTAAGATTTTGCGAGAAACCC
GTAACGACCTCAATCGGGCTAATAATGCCGAGACAGCTAATATCGCTCGGACAGTTTCTGCCAGCATGAAGACCATTAAC
AATATCAGTAAAATCAAAGATATCATGGGCTTAGAAAATTTGCCAGTAGATTTGCAGGAAGTGGCGCAACTGAGGATTCA
GCACCCAGACTACTCTATCCAGCAGTTAGCAGATAGTCTCAGCACCCCTCTGACCAAAAGTGGTGTCAATCACAGACTCA
GAAAAATCAATAAGATAGCGGATGAATTATAA

Upstream 100 bases:

>100_bases
GCGTGATTTCATCTAACTTCCTTCGTCTGGAAAATGGCGGTGCCTTCCACGATGGAGATTTGATTGTGGACGAGTTGATG
CGCATTATACAGGTGAAAAA

Downstream 100 bases:

>100_bases
CGATATAAAGCAACCCCTTGAATTATCAATATCTTCAAGGGGTTTTGTTGTGTTATGAAATCAAAAAGGGGCAACCAAGG
GGCAGAATTAAAAAATAGTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 302

Protein sequence:

>303_residues
MSFTVAVKEEILGQHHLSRHELSAIIKMSGSIGLSTSGLTLSVVTENAKLARHLYESFLHFYEIKSEIRHHQRSNLRKNR
VYTVFTDEKVQDLLSDLHLADSFFGLETGIDEAILSDEEAGRAYLCGAFLANGSIRDPESGKYQLEISSVYLDHAQGIAS
LLQQFLLDAKVLERKKGAVTYLQRAEDIMDFLIVIGAMQARDDFERVKILRETRNDLNRANNAETANIARTVSASMKTIN
NISKIKDIMGLENLPVDLQEVAQLRIQHPDYSIQQLADSLSTPLTKSGVNHRLRKINKIADEL

Sequences:

>Translated_303_residues
MSFTVAVKEEILGQHHLSRHELSAIIKMSGSIGLSTSGLTLSVVTENAKLARHLYESFLHFYEIKSEIRHHQRSNLRKNR
VYTVFTDEKVQDLLSDLHLADSFFGLETGIDEAILSDEEAGRAYLCGAFLANGSIRDPESGKYQLEISSVYLDHAQGIAS
LLQQFLLDAKVLERKKGAVTYLQRAEDIMDFLIVIGAMQARDDFERVKILRETRNDLNRANNAETANIARTVSASMKTIN
NISKIKDIMGLENLPVDLQEVAQLRIQHPDYSIQQLADSLSTPLTKSGVNHRLRKINKIADEL
>Mature_302_residues
SFTVAVKEEILGQHHLSRHELSAIIKMSGSIGLSTSGLTLSVVTENAKLARHLYESFLHFYEIKSEIRHHQRSNLRKNRV
YTVFTDEKVQDLLSDLHLADSFFGLETGIDEAILSDEEAGRAYLCGAFLANGSIRDPESGKYQLEISSVYLDHAQGIASL
LQQFLLDAKVLERKKGAVTYLQRAEDIMDFLIVIGAMQARDDFERVKILRETRNDLNRANNAETANIARTVSASMKTINN
ISKIKDIMGLENLPVDLQEVAQLRIQHPDYSIQQLADSLSTPLTKSGVNHRLRKINKIADEL

Specific function: May be required for sporulation [H]

COG id: COG1481

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the whiA transcriptional regulatory family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003802
- InterPro:   IPR023054
- InterPro:   IPR018478 [H]

Pfam domain/function: PF02650 HTH_WhiA; PF10298 WhiA_N [H]

EC number: NA

Molecular weight: Translated: 34062; Mature: 33931

Theoretical pI: Translated: 6.59; Mature: 6.59

Prosite motif: PS00014 ER_TARGET

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFTVAVKEEILGQHHLSRHELSAIIKMSGSIGLSTSGLTLSVVTENAKLARHLYESFLH
CCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHH
FYEIKSEIRHHQRSNLRKNRVYTVFTDEKVQDLLSDLHLADSFFGLETGIDEAILSDEEA
HHHHHHHHHHHHHHCHHHCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCC
GRAYLCGAFLANGSIRDPESGKYQLEISSVYLDHAQGIASLLQQFLLDAKVLERKKGAVT
CCCEEHHHHHCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
YLQRAEDIMDFLIVIGAMQARDDFERVKILRETRNDLNRANNAETANIARTVSASMKTIN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
NISKIKDIMGLENLPVDLQEVAQLRIQHPDYSIQQLADSLSTPLTKSGVNHRLRKINKIA
HHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
DEL
HCC
>Mature Secondary Structure 
SFTVAVKEEILGQHHLSRHELSAIIKMSGSIGLSTSGLTLSVVTENAKLARHLYESFLH
CEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHH
FYEIKSEIRHHQRSNLRKNRVYTVFTDEKVQDLLSDLHLADSFFGLETGIDEAILSDEEA
HHHHHHHHHHHHHHCHHHCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCC
GRAYLCGAFLANGSIRDPESGKYQLEISSVYLDHAQGIASLLQQFLLDAKVLERKKGAVT
CCCEEHHHHHCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
YLQRAEDIMDFLIVIGAMQARDDFERVKILRETRNDLNRANNAETANIARTVSASMKTIN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
NISKIKDIMGLENLPVDLQEVAQLRIQHPDYSIQQLADSLSTPLTKSGVNHRLRKINKIA
HHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
DEL
HCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA