Click here to switch to the map view.

The map label for this gene is 221232287

Identifier: 221232287

GI number: 221232287

Start: 1503800

End: 1504144

Strand: Reverse

Name: 221232287

Synonym: SPN23F_15410

Alternate gene names: NA

Gene position: 1504144-1503800 (Counterclockwise)

Preceding gene: 221232288

Following gene: 221232286

Centisome position: 67.71

GC content: 42.61

Gene sequence:

>345_bases
ATGAATATCGCCATTAAAGTTGACTTGCAGAAAGCTAAACAGAAACTTTCGAACGAATCCATGACAAGAGGAAAGATTGC
AGTCGCTAGCAAAATCTTGCTAGACAATGAGCAATATATCCCCTTGAGGGGTGGAGAGTTGAGAGCTTCTGGCCGAATTG
TTGGACAAGGTGATGCTGTTGTCTATGGAACAGTTTATGCTAGAGCGCAATTTTACGGATCAAACGGCATTGTCACCTTT
AGGAGATATACCACTCCAGGTACAGGAAAACGATGGGATCAAGTTGCTACTAGTAAACATGCTGAAGAATGGGCTAGAGC
TTTTGTGAAAGGAATGGGACTTTGA

Upstream 100 bases:

>100_bases
GTGCAAAAGTAAACGATGGGATAGGAGATTACACAATTAATGGATTTCAAACTAACTATTATGATGGTGAGATATTCAGT
CAAGAAATTGAGGTGATCTA

Downstream 100 bases:

>100_bases
TGCGAGAGAATGACTTTCAAAATGTACTTTTAAAGCATATCAAGACTTTAAATTTACCAGTTGAACCACGCTTTGATTAC
TTTGAGGATGACAAAGATGA

Product: hypothetical protein

Products: NA

Alternate protein names: Minor Capsid Protein

Number of amino acids: Translated: 114; Mature: 114

Protein sequence:

>114_residues
MNIAIKVDLQKAKQKLSNESMTRGKIAVASKILLDNEQYIPLRGGELRASGRIVGQGDAVVYGTVYARAQFYGSNGIVTF
RRYTTPGTGKRWDQVATSKHAEEWARAFVKGMGL

Sequences:

>Translated_114_residues
MNIAIKVDLQKAKQKLSNESMTRGKIAVASKILLDNEQYIPLRGGELRASGRIVGQGDAVVYGTVYARAQFYGSNGIVTF
RRYTTPGTGKRWDQVATSKHAEEWARAFVKGMGL
>Mature_114_residues
MNIAIKVDLQKAKQKLSNESMTRGKIAVASKILLDNEQYIPLRGGELRASGRIVGQGDAVVYGTVYARAQFYGSNGIVTF
RRYTTPGTGKRWDQVATSKHAEEWARAFVKGMGL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12565; Mature: 12565

Theoretical pI: Translated: 10.68; Mature: 10.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIAIKVDLQKAKQKLSNESMTRGKIAVASKILLDNEQYIPLRGGELRASGRIVGQGDAV
CCEEEEEEHHHHHHHHCCCCCCCCHHEEEEEEEECCCCEEECCCCEEEECCEEEECCCEE
VYGTVYARAQFYGSNGIVTFRRYTTPGTGKRWDQVATSKHAEEWARAFVKGMGL
EEEEEEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNIAIKVDLQKAKQKLSNESMTRGKIAVASKILLDNEQYIPLRGGELRASGRIVGQGDAV
CCEEEEEEHHHHHHHHCCCCCCCCHHEEEEEEEECCCCEEECCCCEEEECCEEEECCCEE
VYGTVYARAQFYGSNGIVTFRRYTTPGTGKRWDQVATSKHAEEWARAFVKGMGL
EEEEEEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA