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The map label for this gene is ydcR [C]

Identifier: 220931932

GI number: 220931932

Start: 1186015

End: 1187199

Strand: Direct

Name: ydcR [C]

Synonym: Hore_10910

Alternate gene names: 220931932

Gene position: 1186015-1187199 (Clockwise)

Preceding gene: 220931931

Following gene: 220931933

Centisome position: 46.0

GC content: 36.37

Gene sequence:

>1185_bases
GTGGATAGAGGTTTTTTTGCCAGCAGGTTAAAGAGGATGGAAAACAAAGAATTAAGTGAATTTATGAGCCTTATCGGTAG
AGATGATATAATTTCATTCGCTGGAGGTATTCCAGATGAAAAAATTTTCCCGGTAAAGGAACTAAAACAACTCATTAATA
AACTTATAAATATAAAAGGGCACAGCCTTTTTCAGTACAGCAGTACTGATGGAAAAAAGAATCTTAAAGAATATCTTGTT
AATTACCTTAAAGGGCAGGAAATTACGGTCAATGAAAACCAAATTTTAATTACAACAGGTTCCCAGCAGGGTCTTGATCT
TCTGGCAAAACTATTTTTAAACCCGGGGGATACAGTTGCCGTTGAAGACCCAGGTTATGTAGGGGGAATCGGAGCAATTA
ATAGTTATGAGGCCAGGATAATGGGGATTGAAGTTGATGAAAATGGACTCAGGATTGATATATTAGAGAAGTTATTGAAA
GAGGGGGAGAAAATAAAATTTCTTTATCTGGTGCCAGACTATTCTAATCCGTCAGGGATGACCCTCTCCTTAAAACGGCG
TTATAAGTTGCTGAAGCTGGCTAACAGGTATAACTTTTATATTATTGAAGATACCCCGTACCGGGAATTGAGTTTTTATA
ATAAACCCCTTCCTGCTTTAAAGAGTATTGATAATAATGAAAAGGTAATATACCTCGGTAGTTTTTCAAAATATTTTATG
CCAGGTTTCAGGATTGGCTGGATATGTGGACCTGAAAAAATCATTGAATTACTGACCACTGCCAAGCAGAATACCGATCT
GGCGTCAAATACCCTGGGACAGGAACTTATTGCCTATGCCGGCCAGGAAGGGATAATTCAGGAACAGATAAAAAAAATAA
GACCATATTACCGTCAAAAATTAGTAAAAATGGAAGAAGGTTTAACAAAATACTTTCCGGAATGCTGTTCCTGGAAAAGA
CCTGAAGGGGGATTTTTCTTCTGGGTAAAACTACCGACTGGAATAAAGAGTAAAAAGTTATTAAAGCAGGCGATAAAAAA
CAGGGTTGCCTTTGTTACCGGCAATTCATTCTGTTCAGATTATAGAAGAGGGGATAATTATATCAGGTTATCTTTTTCAA
ATAATACCCTGTCTGAAATTGATAAGGGGTTGAGTATACTGGGAAAAGTTATTAATAATTTTTAA

Upstream 100 bases:

>100_bases
TGAGAAAATAACAAAGCCGGGTGGTACCGTGTTTATGATAACATCCCTGCCTTCTAGGGCAGGGATTTTTTAATGTCCAT
AAAAAAAGGAGGTTTATAAA

Downstream 100 bases:

>100_bases
ATCAGGATATAATACAGAAGGAAAATATTTATTAATCAAGAATTATTCAAGTATACAGAAGATTTTATAATACCAGGAAA
GGAGTAGACGTAATGGGTGA

Product: putative GntR family transcriptional regulator

Products: NA

Alternate protein names: AspB-1 [H]

Number of amino acids: Translated: 394; Mature: 394

Protein sequence:

>394_residues
MDRGFFASRLKRMENKELSEFMSLIGRDDIISFAGGIPDEKIFPVKELKQLINKLINIKGHSLFQYSSTDGKKNLKEYLV
NYLKGQEITVNENQILITTGSQQGLDLLAKLFLNPGDTVAVEDPGYVGGIGAINSYEARIMGIEVDENGLRIDILEKLLK
EGEKIKFLYLVPDYSNPSGMTLSLKRRYKLLKLANRYNFYIIEDTPYRELSFYNKPLPALKSIDNNEKVIYLGSFSKYFM
PGFRIGWICGPEKIIELLTTAKQNTDLASNTLGQELIAYAGQEGIIQEQIKKIRPYYRQKLVKMEEGLTKYFPECCSWKR
PEGGFFFWVKLPTGIKSKKLLKQAIKNRVAFVTGNSFCSDYRRGDNYIRLSFSNNTLSEIDKGLSILGKVINNF

Sequences:

>Translated_394_residues
MDRGFFASRLKRMENKELSEFMSLIGRDDIISFAGGIPDEKIFPVKELKQLINKLINIKGHSLFQYSSTDGKKNLKEYLV
NYLKGQEITVNENQILITTGSQQGLDLLAKLFLNPGDTVAVEDPGYVGGIGAINSYEARIMGIEVDENGLRIDILEKLLK
EGEKIKFLYLVPDYSNPSGMTLSLKRRYKLLKLANRYNFYIIEDTPYRELSFYNKPLPALKSIDNNEKVIYLGSFSKYFM
PGFRIGWICGPEKIIELLTTAKQNTDLASNTLGQELIAYAGQEGIIQEQIKKIRPYYRQKLVKMEEGLTKYFPECCSWKR
PEGGFFFWVKLPTGIKSKKLLKQAIKNRVAFVTGNSFCSDYRRGDNYIRLSFSNNTLSEIDKGLSILGKVINNF
>Mature_394_residues
MDRGFFASRLKRMENKELSEFMSLIGRDDIISFAGGIPDEKIFPVKELKQLINKLINIKGHSLFQYSSTDGKKNLKEYLV
NYLKGQEITVNENQILITTGSQQGLDLLAKLFLNPGDTVAVEDPGYVGGIGAINSYEARIMGIEVDENGLRIDILEKLLK
EGEKIKFLYLVPDYSNPSGMTLSLKRRYKLLKLANRYNFYIIEDTPYRELSFYNKPLPALKSIDNNEKVIYLGSFSKYFM
PGFRIGWICGPEKIIELLTTAKQNTDLASNTLGQELIAYAGQEGIIQEQIKKIRPYYRQKLVKMEEGLTKYFPECCSWKR
PEGGFFFWVKLPTGIKSKKLLKQAIKNRVAFVTGNSFCSDYRRGDNYIRLSFSNNTLSEIDKGLSILGKVINNF

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=399, Percent_Identity=29.3233082706767, Blast_Score=176, Evalue=4e-44,
Organism=Homo sapiens, GI33469970, Length=399, Percent_Identity=29.3233082706767, Blast_Score=176, Evalue=4e-44,
Organism=Homo sapiens, GI4507369, Length=192, Percent_Identity=27.0833333333333, Blast_Score=77, Evalue=4e-14,
Organism=Escherichia coli, GI1787710, Length=374, Percent_Identity=26.7379679144385, Blast_Score=157, Evalue=1e-39,
Organism=Escherichia coli, GI1790797, Length=332, Percent_Identity=27.1084337349398, Blast_Score=142, Evalue=4e-35,
Organism=Escherichia coli, GI1788722, Length=367, Percent_Identity=25.8855585831063, Blast_Score=96, Evalue=5e-21,
Organism=Escherichia coli, GI48994949, Length=361, Percent_Identity=24.9307479224377, Blast_Score=67, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI71994472, Length=300, Percent_Identity=25, Blast_Score=67, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71994476, Length=300, Percent_Identity=25, Blast_Score=67, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6321236, Length=310, Percent_Identity=24.1935483870968, Blast_Score=95, Evalue=2e-20,
Organism=Saccharomyces cerevisiae, GI6321929, Length=334, Percent_Identity=23.0538922155689, Blast_Score=94, Evalue=3e-20,
Organism=Saccharomyces cerevisiae, GI6321000, Length=305, Percent_Identity=25.2459016393443, Blast_Score=83, Evalue=9e-17,
Organism=Drosophila melanogaster, GI21356535, Length=350, Percent_Identity=26, Blast_Score=130, Evalue=2e-30,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: NA

Molecular weight: Translated: 44995; Mature: 44995

Theoretical pI: Translated: 9.62; Mature: 9.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRGFFASRLKRMENKELSEFMSLIGRDDIISFAGGIPDEKIFPVKELKQLINKLINIKG
CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCC
HSLFQYSSTDGKKNLKEYLVNYLKGQEITVNENQILITTGSQQGLDLLAKLFLNPGDTVA
CEEEEECCCCCHHHHHHHHHHHHCCCEEEECCCEEEEEECCCCHHHHHHHHHCCCCCEEE
VEDPGYVGGIGAINSYEARIMGIEVDENGLRIDILEKLLKEGEKIKFLYLVPDYSNPSGM
ECCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHCCCEEEEEEEEECCCCCCCC
TLSLKRRYKLLKLANRYNFYIIEDTPYRELSFYNKPLPALKSIDNNEKVIYLGSFSKYFM
EEEHHHHHHHHHHHCCCCEEEECCCCCHHHHHCCCCCHHHHCCCCCCEEEEEECCHHHHC
PGFRIGWICGPEKIIELLTTAKQNTDLASNTLGQELIAYAGQEGIIQEQIKKIRPYYRQK
CCCEEEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
LVKMEEGLTKYFPECCSWKRPEGGFFFWVKLPTGIKSKKLLKQAIKNRVAFVTGNSFCSD
HHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCEEEEECCHHHHH
YRRGDNYIRLSFSNNTLSEIDKGLSILGKVINNF
HHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDRGFFASRLKRMENKELSEFMSLIGRDDIISFAGGIPDEKIFPVKELKQLINKLINIKG
CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCC
HSLFQYSSTDGKKNLKEYLVNYLKGQEITVNENQILITTGSQQGLDLLAKLFLNPGDTVA
CEEEEECCCCCHHHHHHHHHHHHCCCEEEECCCEEEEEECCCCHHHHHHHHHCCCCCEEE
VEDPGYVGGIGAINSYEARIMGIEVDENGLRIDILEKLLKEGEKIKFLYLVPDYSNPSGM
ECCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHCCCEEEEEEEEECCCCCCCC
TLSLKRRYKLLKLANRYNFYIIEDTPYRELSFYNKPLPALKSIDNNEKVIYLGSFSKYFM
EEEHHHHHHHHHHHCCCCEEEECCCCCHHHHHCCCCCHHHHCCCCCCEEEEEECCHHHHC
PGFRIGWICGPEKIIELLTTAKQNTDLASNTLGQELIAYAGQEGIIQEQIKKIRPYYRQK
CCCEEEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
LVKMEEGLTKYFPECCSWKRPEGGFFFWVKLPTGIKSKKLLKQAIKNRVAFVTGNSFCSD
HHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCEEEEECCHHHHH
YRRGDNYIRLSFSNNTLSEIDKGLSILGKVINNF
HHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8899719; 11427726 [H]