Click here to switch to the map view.

The map label for this gene is ydeD [C]

Identifier: 220931881

GI number: 220931881

Start: 1126066

End: 1127016

Strand: Direct

Name: ydeD [C]

Synonym: Hore_10380

Alternate gene names: 220931881

Gene position: 1126066-1127016 (Clockwise)

Preceding gene: 220931880

Following gene: 220931882

Centisome position: 43.68

GC content: 32.7

Gene sequence:

>951_bases
ATGAAGAAAAACCTTGAGTATTTTTATGTACTTTTTTTAATTCCTTTTTTATGGGGTAGTACTTTTTTGTTTACCAAGGT
ATGCCTCCGGTTTTTTCCACCGGTTTTTCTGGGGGGTTTGAGATATTTAACAGGTGGTTTAATATTTGCAATAATATTGA
TTTTAAAGTATGGATACAGTCATACAATAACTACAATTAAAAGAAATTTTGCTGGTATTGTCCTGGTTGGGTTTACCGGG
GTAACGATAGCTGTTCTTTTTCAAAATCTGGGTTTGATGTATACAACAGCTTCTTCAGCAGCTCTATTAAACTCATTTGA
ACCGGTAATGGTTTTTTTCTTATCTATCTTAATCCTGAAAGAGAAAGCAACCCTTAATAAAATACTGGGATTAATTATTG
GTTTTTTAGGTGTTATTATAATAATTAGTAATGGTAATTTAAGTAGTTTATTTTCTTTAAACACTAATTTATTAGGAAAT
CTATTAATGCTTGTATCACTTCTTGGTTATTCTTTTTATACTATAATCGGAAAAATTGTCTTAAATGATACTCCGCCCCT
GATTGTAGTTGGAGTAAGTACCCTGTTCGGGGGTATTACCCTTTTAATACCTTCATTTTTTCTGGAGCAAATTCCTGATT
TGACTTTAACTCCTCCTGAAGTATGGTTCAGCTTTATTTATATGGCTACATTACCAACGTGTTTAGCCTATTATCTCTAT
TTTAAATTATTACAGAACATAAATGCCTCTAAAACTGTTGGTATCATCTTGATGATTCCTCTTTATGGTTCTGGACTGGG
AATACTTATTCTAAAGGAACCAGTCAATCCCTGGTTTGTTCTGGGAAGTATTTTGGTTCTGACAGGGGCCTGGTTAACCG
AATCAGGCAAAAAAATATTGAATTATGTGAGGAATATAAGAAAGTATTTTGAGCCTGCTCAGGTAGAATAA

Upstream 100 bases:

>100_bases
AAGAACAGATTACTATTAAAAATAGTGAGTGTATTAACACATCTTTCCCGCAATTCAATAAACTATTACAGAAATTAATT
CAATAATACAGGTGATGAAG

Downstream 100 bases:

>100_bases
AGATGCATACAAGACCGGTTGATATTATAACAAATATATAACTGAAATTATTACATTCCTCTGGATTAATTAGCTGGACA
AGTTTATTTTACGTGAGGTG

Product: drug/metabolite transporter (DMT) superfamily permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 316; Mature: 316

Protein sequence:

>316_residues
MKKNLEYFYVLFLIPFLWGSTFLFTKVCLRFFPPVFLGGLRYLTGGLIFAIILILKYGYSHTITTIKRNFAGIVLVGFTG
VTIAVLFQNLGLMYTTASSAALLNSFEPVMVFFLSILILKEKATLNKILGLIIGFLGVIIIISNGNLSSLFSLNTNLLGN
LLMLVSLLGYSFYTIIGKIVLNDTPPLIVVGVSTLFGGITLLIPSFFLEQIPDLTLTPPEVWFSFIYMATLPTCLAYYLY
FKLLQNINASKTVGIILMIPLYGSGLGILILKEPVNPWFVLGSILVLTGAWLTESGKKILNYVRNIRKYFEPAQVE

Sequences:

>Translated_316_residues
MKKNLEYFYVLFLIPFLWGSTFLFTKVCLRFFPPVFLGGLRYLTGGLIFAIILILKYGYSHTITTIKRNFAGIVLVGFTG
VTIAVLFQNLGLMYTTASSAALLNSFEPVMVFFLSILILKEKATLNKILGLIIGFLGVIIIISNGNLSSLFSLNTNLLGN
LLMLVSLLGYSFYTIIGKIVLNDTPPLIVVGVSTLFGGITLLIPSFFLEQIPDLTLTPPEVWFSFIYMATLPTCLAYYLY
FKLLQNINASKTVGIILMIPLYGSGLGILILKEPVNPWFVLGSILVLTGAWLTESGKKILNYVRNIRKYFEPAQVE
>Mature_316_residues
MKKNLEYFYVLFLIPFLWGSTFLFTKVCLRFFPPVFLGGLRYLTGGLIFAIILILKYGYSHTITTIKRNFAGIVLVGFTG
VTIAVLFQNLGLMYTTASSAALLNSFEPVMVFFLSILILKEKATLNKILGLIIGFLGVIIIISNGNLSSLFSLNTNLLGN
LLMLVSLLGYSFYTIIGKIVLNDTPPLIVVGVSTLFGGITLLIPSFFLEQIPDLTLTPPEVWFSFIYMATLPTCLAYYLY
FKLLQNINASKTVGIILMIPLYGSGLGILILKEPVNPWFVLGSILVLTGAWLTESGKKILNYVRNIRKYFEPAQVE

Specific function: Unknown

COG id: COG0697

COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 DUF6 domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 35137; Mature: 35137

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKNLEYFYVLFLIPFLWGSTFLFTKVCLRFFPPVFLGGLRYLTGGLIFAIILILKYGYS
CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
HTITTIKRNFAGIVLVGFTGVTIAVLFQNLGLMYTTASSAALLNSFEPVMVFFLSILILK
HHHHHHHHCCCCEEEECHHHHHHHHHHHHCCEEEECCHHHHHHHCCCHHHHHHHHHHHHH
EKATLNKILGLIIGFLGVIIIISNGNLSSLFSLNTNLLGNLLMLVSLLGYSFYTIIGKIV
HHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LNDTPPLIVVGVSTLFGGITLLIPSFFLEQIPDLTLTPPEVWFSFIYMATLPTCLAYYLY
CCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
FKLLQNINASKTVGIILMIPLYGSGLGILILKEPVNPWFVLGSILVLTGAWLTESGKKIL
HHHHHCCCCCCCEEEEEEEEECCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
NYVRNIRKYFEPAQVE
HHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKKNLEYFYVLFLIPFLWGSTFLFTKVCLRFFPPVFLGGLRYLTGGLIFAIILILKYGYS
CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
HTITTIKRNFAGIVLVGFTGVTIAVLFQNLGLMYTTASSAALLNSFEPVMVFFLSILILK
HHHHHHHHCCCCEEEECHHHHHHHHHHHHCCEEEECCHHHHHHHCCCHHHHHHHHHHHHH
EKATLNKILGLIIGFLGVIIIISNGNLSSLFSLNTNLLGNLLMLVSLLGYSFYTIIGKIV
HHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LNDTPPLIVVGVSTLFGGITLLIPSFFLEQIPDLTLTPPEVWFSFIYMATLPTCLAYYLY
CCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
FKLLQNINASKTVGIILMIPLYGSGLGILILKEPVNPWFVLGSILVLTGAWLTESGKKIL
HHHHHCCCCCCCEEEEEEEEECCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
NYVRNIRKYFEPAQVE
HHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]