Click here to switch to the map view.

The map label for this gene is yrdC [C]

Identifier: 221230044

GI number: 221230044

Start: 1327847

End: 1328509

Strand: Direct

Name: yrdC [C]

Synonym: MLBr_01136

Alternate gene names: 221230044

Gene position: 1327847-1328509 (Clockwise)

Preceding gene: 221230043

Following gene: 221230045

Centisome position: 40.63

GC content: 65.01

Gene sequence:

>663_bases
GTGGTACGCATGAATGAGGTGTTCGATTGTGCTGACCCAGACCAGCGTGCGCGTGGGATCGCTTCGGCGGTCGCGGCGCT
CAAGGGTGGTCGACTGGTTGTCATGCCGACGGACACTGTCTACGGCATCGGCGCTGACGCCTTCGACCGCGCCGCAGTGG
CCGCACTGCTGTCGGCGAAGGGACGAGGACGTGACATGCCGGTGGGTGTCCTGGTGGGCTCCTGGCACACCATTGAAGGT
CTGGTCTATACGATGCCTGACGGGGCCCGTGAGCTGATCCGCGCATTCTGGCCGGGTGCGCTGAGTCTGGTAGTGGTGCA
CGCGCCATCGTTGAATTGGGATCTCGGCGATGCGCACGGCACCGTGATGCTGCGAATGCCGTTGCACTCGGTTGCCATCG
AATTATTGTGTGAGGTTGGCCCGATGGCGGTTTCCAGTGCCAACGTCTCCGGTCAGCCGGCAGCGGTCGACGTCGACGGG
GCGCGGGGTCAACTCGGAGAGCTGGTCGGGGTCTATCTGGATGCCGGTCCGTCCGCGCAGCAGGCCGCCTCGACTATCGT
CGACTTGACCGAAGCAACCCCGCGGATCCTGCGAGCCGGCCCAGTGAGCGTTGCGCGGATCGCGGAGGTGCTAGGGGTGG
TTCCCGCGAGTCTGATCGCCTAA

Upstream 100 bases:

>100_bases
AGATCTAGCCGGTCGGCCAAGGTTTGTGACGGCCCGCAGGCGGGAAAGCTGGAGCGCATGAATTGCGTCGCGACGATGCA
GAGCGTAGGGATGAGGAGAA

Downstream 100 bases:

>100_bases
ACTGGCCAGCGCGGTTAGGCGGGTCTCAGGTTGGTGCAGTACGTTCGCGAGATGTCCAGCGACCTAGCCACCTTTGCCAG
TGGTTTGCTCGCCTTGTTTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MVRMNEVFDCADPDQRARGIASAVAALKGGRLVVMPTDTVYGIGADAFDRAAVAALLSAKGRGRDMPVGVLVGSWHTIEG
LVYTMPDGARELIRAFWPGALSLVVVHAPSLNWDLGDAHGTVMLRMPLHSVAIELLCEVGPMAVSSANVSGQPAAVDVDG
ARGQLGELVGVYLDAGPSAQQAASTIVDLTEATPRILRAGPVSVARIAEVLGVVPASLIA

Sequences:

>Translated_220_residues
MVRMNEVFDCADPDQRARGIASAVAALKGGRLVVMPTDTVYGIGADAFDRAAVAALLSAKGRGRDMPVGVLVGSWHTIEG
LVYTMPDGARELIRAFWPGALSLVVVHAPSLNWDLGDAHGTVMLRMPLHSVAIELLCEVGPMAVSSANVSGQPAAVDVDG
ARGQLGELVGVYLDAGPSAQQAASTIVDLTEATPRILRAGPVSVARIAEVLGVVPASLIA
>Mature_220_residues
MVRMNEVFDCADPDQRARGIASAVAALKGGRLVVMPTDTVYGIGADAFDRAAVAALLSAKGRGRDMPVGVLVGSWHTIEG
LVYTMPDGARELIRAFWPGALSLVVVHAPSLNWDLGDAHGTVMLRMPLHSVAIELLCEVGPMAVSSANVSGQPAAVDVDG
ARGQLGELVGVYLDAGPSAQQAASTIVDLTEATPRILRAGPVSVARIAEVLGVVPASLIA

Specific function: Binds Preferentially To Double-Stranded RNA. [C]

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain

Homologues:

Organism=Homo sapiens, GI58761510, Length=178, Percent_Identity=32.0224719101124, Blast_Score=65, Evalue=6e-11,
Organism=Escherichia coli, GI2367210, Length=151, Percent_Identity=29.8013245033113, Blast_Score=65, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6321269, Length=219, Percent_Identity=26.9406392694064, Blast_Score=69, Evalue=7e-13,
Organism=Drosophila melanogaster, GI78707274, Length=204, Percent_Identity=33.3333333333333, Blast_Score=78, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1136_MYCLE (P45831)

Other databases:

- EMBL:   U15186
- EMBL:   AL583920
- PIR:   T09983
- RefSeq:   NP_301830.1
- ProteinModelPortal:   P45831
- SMR:   P45831
- EnsemblBacteria:   EBMYCT00000028699
- GeneID:   910230
- GenomeReviews:   AL450380_GR
- KEGG:   mle:ML1136
- NMPDR:   fig|272631.1.peg.702
- Leproma:   ML1136
- GeneTree:   EBGT00050000016158
- HOGENOM:   HBG738264
- OMA:   KHRGPDM
- ProtClustDB:   CLSK791088
- BioCyc:   MLEP272631:ML1136-MONOMER
- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070
- Gene3D:   G3DSA:3.90.870.10
- TIGRFAMs:   TIGR00057

Pfam domain/function: PF01300 Sua5_yciO_yrdC; SSF55821 DHBP_synth_RibB-like_a/b_dom

EC number: NA

Molecular weight: Translated: 22698; Mature: 22698

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRMNEVFDCADPDQRARGIASAVAALKGGRLVVMPTDTVYGIGADAFDRAAVAALLSAK
CCCCCCHHCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCEEECCCCHHHHHHHHHHHHCC
GRGRDMPVGVLVGSWHTIEGLVYTMPDGARELIRAFWPGALSLVVVHAPSLNWDLGDAHG
CCCCCCCEEEEEECCEEECCEEEECCCCHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCC
TVMLRMPLHSVAIELLCEVGPMAVSSANVSGQPAAVDVDGARGQLGELVGVYLDAGPSAQ
EEEEEECHHHHHHHHHHHCCCCEEECCCCCCCCCEEECCCCCCHHHHEEEEEECCCCCHH
QAASTIVDLTEATPRILRAGPVSVARIAEVLGVVPASLIA
HHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MVRMNEVFDCADPDQRARGIASAVAALKGGRLVVMPTDTVYGIGADAFDRAAVAALLSAK
CCCCCCHHCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCEEECCCCHHHHHHHHHHHHCC
GRGRDMPVGVLVGSWHTIEGLVYTMPDGARELIRAFWPGALSLVVVHAPSLNWDLGDAHG
CCCCCCCEEEEEECCEEECCEEEECCCCHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCC
TVMLRMPLHSVAIELLCEVGPMAVSSANVSGQPAAVDVDGARGQLGELVGVYLDAGPSAQ
EEEEEECHHHHHHHHHHHCCCCEEECCCCCCCCCEEECCCCCCHHHHEEEEEECCCCCHH
QAASTIVDLTEATPRILRAGPVSVARIAEVLGVVPASLIA
HHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11234002