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The map label for this gene is pdxS

Identifier: 221229619

GI number: 221229619

Start: 550202

End: 551125

Strand: Reverse

Name: pdxS

Synonym: MLBr_00450

Alternate gene names: 221229619

Gene position: 551125-550202 (Counterclockwise)

Preceding gene: 221229620

Following gene: 221229616

Centisome position: 16.86

GC content: 62.23

Gene sequence:

>924_bases
GTGGATAGCGCCGCACAGTCGAACCAGGCCCAGTCGGTTTTCGGCCAGACCGGAACGGCGCGGGTGAAGCGCGGTATGGC
CGAGATGCTCAAAGGCGGCGTCATAATGGACGTCGTTATCCCCGAGCAGGCCCGAATCGCCGAAGGCTCCGGTGCCGTCG
CAGTGATGGCGCTGGAGAGGGTGCCTTCCGATATCCGTGCTCAGGGCGGGGTGTCACGGATGAGCGACCCCGACATGATC
GAGAGCATCATCGCCGCGGTCACGATTCCGGTGATGGCCAAAGCGAGGATCGGGCATTTCGTCGAGGCGCAGATCCTGCA
GAGCCTGGGTGTCGACTACATCGACGAGTCCGAAGTGCTGACTCCCGCTGACTACACCCATCACATCGACAAGTGGAAGT
TCACCGTACCGTTTGTGTGTGGGGCTACCAATCTCGGTGAGGCGCTACGGCGCATTAACGAGGGGGCGGCAATGATCCGG
TCCAAGGGCGAAGCCGGTACCGGTGACGTATCCAACGCAACCACGCATATGCGGGCCATCGCCGGCGACATCCGCCGCCT
GACCTCCTTATCTGAGGACGAGTTGTATGTTGCAGCAAAGGAATTACACGCCCCCTACGAGCTCGTCATCGAAGTAGCCC
GGACAAACAAGCTGCCGGTCACGCTGTTCACTGCCGGCGGAATCGCCACTCCCGCCGACGCGGCGATGATGATGCAGCTC
GGCGCCGAGGGCATCTTTGTGGGCTCAGGAATCTTCAAGTCGAGTGATCCGGCTCAGCGTGCCGCCGCGATCGTTAAGGC
CACCACATTCTACGACGATCCCGATGTACTGGCCAAGGTGTCGCGCGGGCTGGGTGAGGCGATGGCGGGCATCGATGTTG
AACAGATTGCGCAGCCCGATCGGCTGGCCCAGCGGGGCTGGTAA

Upstream 100 bases:

>100_bases
CCTATGTGCTGCTGTCAATTTGTTGAGCAGGGCCAAACTCGTTTATCGCCCGCCACTAGAGTTAATTGAGACAAATCAGT
TTAAGGGAGAGAAAAGTCTA

Downstream 100 bases:

>100_bases
AAACGGTGATGAGCGCTTGAGCGAAAAGCAGACGACCGATAGCGTGGCAATCAAGGAAATCTTTGATCTGGAGCAGCTCG
AGGTCAACATTTTCCATGCT

Product: pyridoxal biosynthesis lyase PdxS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MDSAAQSNQAQSVFGQTGTARVKRGMAEMLKGGVIMDVVIPEQARIAEGSGAVAVMALERVPSDIRAQGGVSRMSDPDMI
ESIIAAVTIPVMAKARIGHFVEAQILQSLGVDYIDESEVLTPADYTHHIDKWKFTVPFVCGATNLGEALRRINEGAAMIR
SKGEAGTGDVSNATTHMRAIAGDIRRLTSLSEDELYVAAKELHAPYELVIEVARTNKLPVTLFTAGGIATPADAAMMMQL
GAEGIFVGSGIFKSSDPAQRAAAIVKATTFYDDPDVLAKVSRGLGEAMAGIDVEQIAQPDRLAQRGW

Sequences:

>Translated_307_residues
MDSAAQSNQAQSVFGQTGTARVKRGMAEMLKGGVIMDVVIPEQARIAEGSGAVAVMALERVPSDIRAQGGVSRMSDPDMI
ESIIAAVTIPVMAKARIGHFVEAQILQSLGVDYIDESEVLTPADYTHHIDKWKFTVPFVCGATNLGEALRRINEGAAMIR
SKGEAGTGDVSNATTHMRAIAGDIRRLTSLSEDELYVAAKELHAPYELVIEVARTNKLPVTLFTAGGIATPADAAMMMQL
GAEGIFVGSGIFKSSDPAQRAAAIVKATTFYDDPDVLAKVSRGLGEAMAGIDVEQIAQPDRLAQRGW
>Mature_307_residues
MDSAAQSNQAQSVFGQTGTARVKRGMAEMLKGGVIMDVVIPEQARIAEGSGAVAVMALERVPSDIRAQGGVSRMSDPDMI
ESIIAAVTIPVMAKARIGHFVEAQILQSLGVDYIDESEVLTPADYTHHIDKWKFTVPFVCGATNLGEALRRINEGAAMIR
SKGEAGTGDVSNATTHMRAIAGDIRRLTSLSEDELYVAAKELHAPYELVIEVARTNKLPVTLFTAGGIATPADAAMMMQL
GAEGIFVGSGIFKSSDPAQRAAAIVKATTFYDDPDVLAKVSRGLGEAMAGIDVEQIAQPDRLAQRGW

Specific function: Involved in the production of pyridoxal phosphate, probably by incorporating ammonia into the pyridine ring

COG id: COG0214

COG function: function code H; Pyridoxine biosynthesis enzyme

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pdxS/SNZ family

Homologues:

Organism=Saccharomyces cerevisiae, GI6323743, Length=291, Percent_Identity=62.5429553264605, Blast_Score=374, Evalue=1e-104,
Organism=Saccharomyces cerevisiae, GI6321049, Length=294, Percent_Identity=62.9251700680272, Blast_Score=364, Evalue=1e-101,
Organism=Saccharomyces cerevisiae, GI6323996, Length=294, Percent_Identity=62.5850340136054, Blast_Score=363, Evalue=1e-101,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PDXS_MYCLB (B8ZUG3)

Other databases:

- EMBL:   FM211192
- RefSeq:   YP_002503035.1
- ProteinModelPortal:   B8ZUG3
- SMR:   B8ZUG3
- EnsemblBacteria:   EBMYCT00000087559
- GeneID:   7326012
- GenomeReviews:   FM211192_GR
- GeneTree:   EBGT00050000016739
- HOGENOM:   HBG292342
- OMA:   ARMSDPD
- ProtClustDB:   PRK04180
- HAMAP:   MF_01824
- InterPro:   IPR013785
- InterPro:   IPR011060
- InterPro:   IPR001852
- Gene3D:   G3DSA:3.20.20.70
- PIRSF:   PIRSF029271
- TIGRFAMs:   TIGR00343

Pfam domain/function: PF01680 SOR_SNZ; SSF51366 RibP_bind_barrel

EC number: NA

Molecular weight: Translated: 32572; Mature: 32572

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: PS01235 PDXS_SNZ_1; PS51129 PDXS_SNZ_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSAAQSNQAQSVFGQTGTARVKRGMAEMLKGGVIMDVVIPEQARIAEGSGAVAVMALER
CCCCCCCCHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEECCCCHHCCCCCCCEEEEEHHH
VPSDIRAQGGVSRMSDPDMIESIIAAVTIPVMAKARIGHFVEAQILQSLGVDYIDESEVL
CCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
TPADYTHHIDKWKFTVPFVCGATNLGEALRRINEGAAMIRSKGEAGTGDVSNATTHMRAI
CCCHHHHHCCCEEEEECEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
AGDIRRLTSLSEDELYVAAKELHAPYELVIEVARTNKLPVTLFTAGGIATPADAAMMMQL
HHHHHHHHCCCCCHHEEEHHHHCCCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHH
GAEGIFVGSGIFKSSDPAQRAAAIVKATTFYDDPDVLAKVSRGLGEAMAGIDVEQIAQPD
CCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHCCHH
RLAQRGW
HHHHCCC
>Mature Secondary Structure
MDSAAQSNQAQSVFGQTGTARVKRGMAEMLKGGVIMDVVIPEQARIAEGSGAVAVMALER
CCCCCCCCHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEECCCCHHCCCCCCCEEEEEHHH
VPSDIRAQGGVSRMSDPDMIESIIAAVTIPVMAKARIGHFVEAQILQSLGVDYIDESEVL
CCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
TPADYTHHIDKWKFTVPFVCGATNLGEALRRINEGAAMIRSKGEAGTGDVSNATTHMRAI
CCCHHHHHCCCEEEEECEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
AGDIRRLTSLSEDELYVAAKELHAPYELVIEVARTNKLPVTLFTAGGIATPADAAMMMQL
HHHHHHHHCCCCCHHEEEHHHHCCCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHH
GAEGIFVGSGIFKSSDPAQRAAAIVKATTFYDDPDVLAKVSRGLGEAMAGIDVEQIAQPD
CCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHCCHH
RLAQRGW
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA