BacMap

Definition	Anaeromyxobacter dehalogenans 2CP-1 chromosome, complete genome.
Accession	NC_011891
Length	5,029,329

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The map label for this gene is ydgB [C]

Identifier: 220918721

GI number: 220918721

Start: 4050296

End: 4050997

Strand: Direct

Name: ydgB [C]

Synonym: A2cp1_3629

Alternate gene names: 220918721

Gene position: 4050296-4050997 (Clockwise)

Preceding gene: 220918720

Following gene: 220918722

Centisome position: 80.53

GC content: 78.92

Gene sequence:

>702_bases
GTGGCCGACCGCATCGCGCTGGTGACCGGGGCCGGGGTCCGCGTGGGCGAGGCGATCGCCCGCGCGCTGGCGAAGGACGG
CTGGACCGTCGCCGCGCACTACCGCACGCACCGCCCGCGCGGCTTCGCCTCCGCGCTGCAGGCCGACCTCGCCGCCGCCG
ACGGGCCGGCGCAGCTCGCGGCCGCGTTCCGCGCCCGGCACCGCCGCCTCGACCTGCTGGTGAACAGCGCCTCGGTGTTC
GACGCGCTCCCGCTGGCCGGCACCGACGCCGCGGCGTTCGACTCGCAGATGGACCTGAACGCGCGGGCGCCGCTCCTGCT
CGTCCGGGCGCTCGCGCCGCTGCTGGCGCGGGCCCGCGGCTCCGTCGTGAACGTCATCGACGTGGGCGGCGGGCTGGTGC
CGTGGAAGGGCTATGCGGCCTACGCGGCGTCGAAGGCGGCGCTGGCGCGGCTGACCGAGTGCCTGGCGCTCGAGCTGGCG
CCCCGGGTGCGCGTGAACGGCGTGGCCCCCGGCACCGTGCTCTGGCCCGAGCGCTACCCCGCGGCGCAGCGGCGCGGGCT
CACCGCGCGCATCCCGCTCCGGCGGCCGGGCACGCCGGAAGACGTGGCGGCCGCCGTGCGTTACCTCGCCGACGCGCCGT
TCGTCACCGGCGCCGTGCTGCCGGTGGACGGAGGGCGCCACCTGTCCGGACGCGCCGGCTGA

Upstream 100 bases:

>100_bases
AACCGGCTCTCCGACCTCCTGTTCGTGGCGGCGCGCGTCGCGAACCACCGCGCGCGCAAGCCGGAGACCGCCTGGGACCC
GCACCGCGAGAGGTGACACC

Downstream 100 bases:

>100_bases
ACGATCGAAAAAGTGGTGTGGGTGCGCGGTCGAACCCGCGTTGAAGCGCCCCACCCTCCCTGTTAGACTCCTTGCGCCAC
GTCAACGAGGGTGCGCCCCT

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: ORFC [H]

Number of amino acids: Translated: 233; Mature: 232

Protein sequence:

>233_residues
MADRIALVTGAGVRVGEAIARALAKDGWTVAAHYRTHRPRGFASALQADLAAADGPAQLAAAFRARHRRLDLLVNSASVF
DALPLAGTDAAAFDSQMDLNARAPLLLVRALAPLLARARGSVVNVIDVGGGLVPWKGYAAYAASKAALARLTECLALELA
PRVRVNGVAPGTVLWPERYPAAQRRGLTARIPLRRPGTPEDVAAAVRYLADAPFVTGAVLPVDGGRHLSGRAG

Sequences:

>Translated_233_residues
MADRIALVTGAGVRVGEAIARALAKDGWTVAAHYRTHRPRGFASALQADLAAADGPAQLAAAFRARHRRLDLLVNSASVF
DALPLAGTDAAAFDSQMDLNARAPLLLVRALAPLLARARGSVVNVIDVGGGLVPWKGYAAYAASKAALARLTECLALELA
PRVRVNGVAPGTVLWPERYPAAQRRGLTARIPLRRPGTPEDVAAAVRYLADAPFVTGAVLPVDGGRHLSGRAG
>Mature_232_residues
ADRIALVTGAGVRVGEAIARALAKDGWTVAAHYRTHRPRGFASALQADLAAADGPAQLAAAFRARHRRLDLLVNSASVFD
ALPLAGTDAAAFDSQMDLNARAPLLLVRALAPLLARARGSVVNVIDVGGGLVPWKGYAAYAASKAALARLTECLALELAP
RVRVNGVAPGTVLWPERYPAAQRRGLTARIPLRRPGTPEDVAAAVRYLADAPFVTGAVLPVDGGRHLSGRAG

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=250, Percent_Identity=32.4, Blast_Score=107, Evalue=9e-24,
Organism=Homo sapiens, GI126723750, Length=250, Percent_Identity=30, Blast_Score=92, Evalue=5e-19,
Organism=Homo sapiens, GI5031737, Length=246, Percent_Identity=32.9268292682927, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI40254992, Length=236, Percent_Identity=30.5084745762712, Blast_Score=88, Evalue=5e-18,
Organism=Homo sapiens, GI15277342, Length=247, Percent_Identity=32.7935222672065, Blast_Score=85, Evalue=5e-17,
Organism=Homo sapiens, GI33667109, Length=189, Percent_Identity=35.4497354497354, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI7705925, Length=250, Percent_Identity=32, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI66933014, Length=178, Percent_Identity=30.3370786516854, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI19923817, Length=258, Percent_Identity=27.1317829457364, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI10190704, Length=250, Percent_Identity=30.4, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI59889578, Length=194, Percent_Identity=33.5051546391753, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI126723191, Length=179, Percent_Identity=31.2849162011173, Blast_Score=69, Evalue=2e-12,
Organism=Escherichia coli, GI1787891, Length=231, Percent_Identity=33.3333333333333, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI2367175, Length=246, Percent_Identity=30.8943089430894, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI87082100, Length=249, Percent_Identity=31.7269076305221, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI1787335, Length=243, Percent_Identity=31.6872427983539, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI87082160, Length=245, Percent_Identity=28.5714285714286, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1786812, Length=241, Percent_Identity=31.5352697095436, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1789208, Length=249, Percent_Identity=30.5220883534137, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787905, Length=245, Percent_Identity=29.3877551020408, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI2367365, Length=238, Percent_Identity=32.7731092436975, Blast_Score=63, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71994600, Length=249, Percent_Identity=31.3253012048193, Blast_Score=113, Evalue=9e-26,
Organism=Caenorhabditis elegans, GI71994604, Length=248, Percent_Identity=33.0645161290323, Blast_Score=110, Evalue=6e-25,
Organism=Caenorhabditis elegans, GI17562910, Length=265, Percent_Identity=30.5660377358491, Blast_Score=110, Evalue=9e-25,
Organism=Caenorhabditis elegans, GI17562908, Length=258, Percent_Identity=29.8449612403101, Blast_Score=91, Evalue=6e-19,
Organism=Caenorhabditis elegans, GI17562906, Length=258, Percent_Identity=29.8449612403101, Blast_Score=90, Evalue=8e-19,
Organism=Caenorhabditis elegans, GI17560332, Length=266, Percent_Identity=26.6917293233083, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17560676, Length=253, Percent_Identity=31.6205533596838, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17559104, Length=261, Percent_Identity=25.6704980842912, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17560150, Length=253, Percent_Identity=28.0632411067194, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17531453, Length=260, Percent_Identity=28.4615384615385, Blast_Score=85, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI115534694, Length=248, Percent_Identity=29.8387096774194, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17563726, Length=267, Percent_Identity=26.2172284644195, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17555706, Length=241, Percent_Identity=28.6307053941909, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI72000259, Length=254, Percent_Identity=28.3464566929134, Blast_Score=81, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI17562904, Length=261, Percent_Identity=25.2873563218391, Blast_Score=80, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI193204405, Length=262, Percent_Identity=28.2442748091603, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17562990, Length=257, Percent_Identity=26.0700389105058, Blast_Score=79, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17565030, Length=263, Percent_Identity=26.615969581749, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17551412, Length=262, Percent_Identity=27.4809160305344, Blast_Score=77, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17561402, Length=255, Percent_Identity=26.2745098039216, Blast_Score=77, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17538480, Length=262, Percent_Identity=27.0992366412214, Blast_Score=77, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI17538486, Length=265, Percent_Identity=25.6603773584906, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI25147288, Length=246, Percent_Identity=29.2682926829268, Blast_Score=74, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17560220, Length=261, Percent_Identity=26.8199233716475, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI23397609, Length=246, Percent_Identity=35.3658536585366, Blast_Score=129, Evalue=1e-30,
Organism=Drosophila melanogaster, GI28571526, Length=248, Percent_Identity=36.2903225806452, Blast_Score=124, Evalue=5e-29,
Organism=Drosophila melanogaster, GI21357041, Length=253, Percent_Identity=35.9683794466403, Blast_Score=123, Evalue=1e-28,
Organism=Drosophila melanogaster, GI24644339, Length=251, Percent_Identity=32.2709163346614, Blast_Score=105, Evalue=2e-23,
Organism=Drosophila melanogaster, GI24643142, Length=243, Percent_Identity=34.9794238683128, Blast_Score=94, Evalue=8e-20,
Organism=Drosophila melanogaster, GI24644337, Length=204, Percent_Identity=36.7647058823529, Blast_Score=90, Evalue=2e-18,
Organism=Drosophila melanogaster, GI21355319, Length=246, Percent_Identity=28.4552845528455, Blast_Score=83, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24639444, Length=243, Percent_Identity=29.6296296296296, Blast_Score=82, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 24285; Mature: 24154

Theoretical pI: Translated: 11.39; Mature: 11.39

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADRIALVTGAGVRVGEAIARALAKDGWTVAAHYRTHRPRGFASALQADLAAADGPAQLA
CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHH
AAFRARHRRLDLLVNSASVFDALPLAGTDAAAFDSQMDLNARAPLLLVRALAPLLARARG
HHHHHHHHHHHHEECCHHHHHCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCC
SVVNVIDVGGGLVPWKGYAAYAASKAALARLTECLALELAPRVRVNGVAPGTVLWPERYP
CEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCEECCCCCC
AAQRRGLTARIPLRRPGTPEDVAAAVRYLADAPFVTGAVLPVDGGRHLSGRAG
HHHHCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCC
>Mature Secondary Structure 
ADRIALVTGAGVRVGEAIARALAKDGWTVAAHYRTHRPRGFASALQADLAAADGPAQLA
CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHH
AAFRARHRRLDLLVNSASVFDALPLAGTDAAAFDSQMDLNARAPLLLVRALAPLLARARG
HHHHHHHHHHHHEECCHHHHHCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCC
SVVNVIDVGGGLVPWKGYAAYAASKAALARLTECLALELAPRVRVNGVAPGTVLWPERYP
CEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCEECCCCCC
AAQRRGLTARIPLRRPGTPEDVAAAVRYLADAPFVTGAVLPVDGGRHLSGRAG
HHHHCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8868443 [H]