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The map label for this gene is yraR [H]

Identifier: 220918186

GI number: 220918186

Start: 3412907

End: 3413575

Strand: Direct

Name: yraR [H]

Synonym: A2cp1_3089

Alternate gene names: 220918186

Gene position: 3412907-3413575 (Clockwise)

Preceding gene: 220918178

Following gene: 220918188

Centisome position: 67.86

GC content: 77.88

Gene sequence:

>669_bases
ATGCGGACCCTCGTCATCGCCGGCGGCTCCGGCCTCGTCGGCTCCCTCGCGCTGCGCCGCCTGCTCGCCCGCGACGACGT
CGCCCGCGTGATCGCGGTCGGCCGCCGCGCGCTCCCGGTCGAGCACGCCCGGCTCTCCTCGCGGATCGCGGACCTCCGCG
ATCCGGCGGCCATCCAGCGGGCGCTGCCGGAGCCGGTGGACGTGGCGGTCTGCTGCCTCGGCACGACCATGAAGCAGGCC
GGGTCGCGGGAGGCGTTCCGGGCAGTGGACCTCGAGGCGGCGGTCGCGTTCGGCGAGGCCGCGCGGGCGAGCGGCGCCCG
GCGCTTCGTGCTGGTGAGCTCGCTCGGCGCGAGCCCGCGCTCGAGGAGCTTCTACCTGCGGACGAAGGGCGAGGCCGAGG
AGGCGCTGGCGCGCCTCGGCTACGCGCAGCTCACCGTGCTCCGCCCGTCCTTCATCGACGATCGCGGCGCGCGGAAGGAG
CCCCGGCTCGGCGAGCGGCTCGCGCTCCCGCTCGCCCGCGCCGCGTTCGCGCTGCTCGGCAGGGAGCGGCGCCACGCGCC
CGTCCCAGCGGAGACCGTCGCCCGCGCGCTCGTACGCCTCGCGCTCGACGGGTCCGCGGAGCCGGTGCGCATCGTGGAGA
GCGAGGCGCTGCACGCGCTGGGGCGCTGA

Upstream 100 bases:

>100_bases
AGCCACTCGCGGCAATTCCGCGCACCGAGCCGCGTCTTGATCGTGGTCACGCGTTCGCTGACGCATCGCGGCGCGCGGCG
CGCCGGGTTAATCCCATGCC

Downstream 100 bases:

>100_bases
CGCCCGACGCCGCCGCCGGCTCACCGCCCGGGGCGCTCCACGAGCACCAGGTCCGAGCGCTCCTGCACCTGCTCCAGCAC
CAGCTCGCGGCCGTCCGGGG

Product: NAD-dependent epimerase/dehydratase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MRTLVIAGGSGLVGSLALRRLLARDDVARVIAVGRRALPVEHARLSSRIADLRDPAAIQRALPEPVDVAVCCLGTTMKQA
GSREAFRAVDLEAAVAFGEAARASGARRFVLVSSLGASPRSRSFYLRTKGEAEEALARLGYAQLTVLRPSFIDDRGARKE
PRLGERLALPLARAAFALLGRERRHAPVPAETVARALVRLALDGSAEPVRIVESEALHALGR

Sequences:

>Translated_222_residues
MRTLVIAGGSGLVGSLALRRLLARDDVARVIAVGRRALPVEHARLSSRIADLRDPAAIQRALPEPVDVAVCCLGTTMKQA
GSREAFRAVDLEAAVAFGEAARASGARRFVLVSSLGASPRSRSFYLRTKGEAEEALARLGYAQLTVLRPSFIDDRGARKE
PRLGERLALPLARAAFALLGRERRHAPVPAETVARALVRLALDGSAEPVRIVESEALHALGR
>Mature_222_residues
MRTLVIAGGSGLVGSLALRRLLARDDVARVIAVGRRALPVEHARLSSRIADLRDPAAIQRALPEPVDVAVCCLGTTMKQA
GSREAFRAVDLEAAVAFGEAARASGARRFVLVSSLGASPRSRSFYLRTKGEAEEALARLGYAQLTVLRPSFIDDRGARKE
PRLGERLALPLARAAFALLGRERRHAPVPAETVARALVRLALDGSAEPVRIVESEALHALGR

Specific function: Unknown

COG id: COG0702

COG function: function code MG; Predicted nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To yeast YER004W [H]

Homologues:

Organism=Homo sapiens, GI148728172, Length=230, Percent_Identity=30.4347826086957, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI148728168, Length=230, Percent_Identity=30.4347826086957, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI148728164, Length=230, Percent_Identity=30.4347826086957, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI148728166, Length=230, Percent_Identity=30.4347826086957, Blast_Score=96, Evalue=4e-20,
Organism=Escherichia coli, GI87082218, Length=217, Percent_Identity=35.0230414746544, Blast_Score=105, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI71983631, Length=201, Percent_Identity=30.8457711442786, Blast_Score=90, Evalue=8e-19,
Organism=Saccharomyces cerevisiae, GI6320840, Length=226, Percent_Identity=30.0884955752212, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000534 [H]

Pfam domain/function: PF01118 Semialdhyde_dh [H]

EC number: NA

Molecular weight: Translated: 23739; Mature: 23739

Theoretical pI: Translated: 11.69; Mature: 11.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTLVIAGGSGLVGSLALRRLLARDDVARVIAVGRRALPVEHARLSSRIADLRDPAAIQR
CCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHH
ALPEPVDVAVCCLGTTMKQAGSREAFRAVDLEAAVAFGEAARASGARRFVLVSSLGASPR
HCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCC
SRSFYLRTKGEAEEALARLGYAQLTVLRPSFIDDRGARKEPRLGERLALPLARAAFALLG
CCEEEEEECCCHHHHHHHCCHHHEEEECCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH
RERRHAPVPAETVARALVRLALDGSAEPVRIVESEALHALGR
HHCCCCCCCHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHCC
>Mature Secondary Structure
MRTLVIAGGSGLVGSLALRRLLARDDVARVIAVGRRALPVEHARLSSRIADLRDPAAIQR
CCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHH
ALPEPVDVAVCCLGTTMKQAGSREAFRAVDLEAAVAFGEAARASGARRFVLVSSLGASPR
HCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCC
SRSFYLRTKGEAEEALARLGYAQLTVLRPSFIDDRGARKEPRLGERLALPLARAAFALLG
CCEEEEEECCCHHHHHHHCCHHHEEEECCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH
RERRHAPVPAETVARALVRLALDGSAEPVRIVESEALHALGR
HHCCCCCCCHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]