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The map label for this gene is 220918177

Identifier: 220918177

GI number: 220918177

Start: 3402563

End: 3403132

Strand: Direct

Name: 220918177

Synonym: A2cp1_3080

Alternate gene names: NA

Gene position: 3402563-3403132 (Clockwise)

Preceding gene: 220918175

Following gene: 220918178

Centisome position: 67.65

GC content: 79.47

Gene sequence:

>570_bases
ATGCGCTGGGCAGGGACGGTGGAAGCGCCGGCCGATGCGGCGGACGGAGCGCTGGCGCGGCGCGCCGCCTGCGGGGATCG
TGCGGCCGAGGAGGCGCTGTGCCGGCGCTTCCGCCCGCGGATCCACCTGTACGGCCTCCGTCACCTGCGCGACGACGCCG
CCGCGGCCGACCTGGCGCAGGACGTGCTCCTGGCGGTGATCGCGCGCCTCCGCGCCGGCGCGGTGCGCGAGCCGGACCAC
CTCGCGTCGTTCGTGCTCTCGACCTGCCGCCAGCTCGCCGGGAGCGCCGTCCGGAGCGAGCGCCGCCGCGAGGCGCTCCT
CGCCGCCGAGCCCCTCCCCGCGCCGCACGACCCGCCGGCCGACCCGCTCCCGCGCGATCGCCTCGCGCGCTGCCTCCAGG
CGCTCGCCGCCCGGGAGCGGGCCGTCGTGGTCGCGACGTTCTACGCGGAGCAGCCCGCCGAGGCGATCTCGCGCGACCAC
GCGCTCAGCGCGGGTCACGTCCGCGTCCTGCGCCACCGCGCGCTGCGCCGCCTGCGCACCTGCCTCGGCCTGGAGGAGGC
CGCCGGATGA

Upstream 100 bases:

>100_bases
GCCTTCACCTCTCGGAGGTGGCGCGGCCGCGTCCGCCGTTACGCCGCCTCTGAAGGGGCGGCGGGGGCGCACCGGGCACC
GCGCGGTTATGCGCTGCTCC

Downstream 100 bases:

>100_bases
GCCCCGGACCTCGCTGCCCGAGCTGGGACGACCTCGCGGACTGGTGGGCCGGCGACCTCGCGCCCGCGGACCGGGACGCG
ATCGAGGAACACCTGCTCGC

Product: ECF subfamily RNA polymerase sigma-24 subunit

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily

Number of amino acids: Translated: 189; Mature: 189

Protein sequence:

>189_residues
MRWAGTVEAPADAADGALARRAACGDRAAEEALCRRFRPRIHLYGLRHLRDDAAAADLAQDVLLAVIARLRAGAVREPDH
LASFVLSTCRQLAGSAVRSERRREALLAAEPLPAPHDPPADPLPRDRLARCLQALAARERAVVVATFYAEQPAEAISRDH
ALSAGHVRVLRHRALRRLRTCLGLEEAAG

Sequences:

>Translated_189_residues
MRWAGTVEAPADAADGALARRAACGDRAAEEALCRRFRPRIHLYGLRHLRDDAAAADLAQDVLLAVIARLRAGAVREPDH
LASFVLSTCRQLAGSAVRSERRREALLAAEPLPAPHDPPADPLPRDRLARCLQALAARERAVVVATFYAEQPAEAISRDH
ALSAGHVRVLRHRALRRLRTCLGLEEAAG
>Mature_189_residues
MRWAGTVEAPADAADGALARRAACGDRAAEEALCRRFRPRIHLYGLRHLRDDAAAADLAQDVLLAVIARLRAGAVREPDH
LASFVLSTCRQLAGSAVRSERRREALLAAEPLPAPHDPPADPLPRDRLARCLQALAARERAVVVATFYAEQPAEAISRDH
ALSAGHVRVLRHRALRRLRTCLGLEEAAG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20532; Mature: 20532

Theoretical pI: Translated: 9.57; Mature: 9.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRWAGTVEAPADAADGALARRAACGDRAAEEALCRRFRPRIHLYGLRHLRDDAAAADLAQ
CCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
DVLLAVIARLRAGAVREPDHLASFVLSTCRQLAGSAVRSERRREALLAAEPLPAPHDPPA
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
DPLPRDRLARCLQALAARERAVVVATFYAEQPAEAISRDHALSAGHVRVLRHRALRRLRT
CCCCHHHHHHHHHHHHHHCCCEEEEHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
CLGLEEAAG
HHHHHHCCC
>Mature Secondary Structure
MRWAGTVEAPADAADGALARRAACGDRAAEEALCRRFRPRIHLYGLRHLRDDAAAADLAQ
CCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
DVLLAVIARLRAGAVREPDHLASFVLSTCRQLAGSAVRSERRREALLAAEPLPAPHDPPA
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
DPLPRDRLARCLQALAARERAVVVATFYAEQPAEAISRDHALSAGHVRVLRHRALRRLRT
CCCCHHHHHHHHHHHHHHCCCEEEEHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
CLGLEEAAG
HHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA