Click here to switch to the map view.

The map label for this gene is gra-orf6 [H]

Identifier: 220918159

GI number: 220918159

Start: 3387812

End: 3388528

Strand: Reverse

Name: gra-orf6 [H]

Synonym: A2cp1_3062

Alternate gene names: 220918159

Gene position: 3388528-3387812 (Counterclockwise)

Preceding gene: 220918161

Following gene: 220918154

Centisome position: 67.38

GC content: 74.76

Gene sequence:

>717_bases
GTGGACCTGAAAGGCAAGCGGGCGCTGGTGGTGGGAGGGAGCTCGGGGATCGGCCTCGCGACGGCGCGGCTCCTGGCGGC
GCGCGGGGCGCGGGTGACTGCGGCGGGCCGGGACCGGACGAAGGTCGCGGCCTTGGGAGAAGGGATCGAGGGCGCCGTGC
TCGACGCCGCCTCGCCGGCCTCGCTCCAGGAGTACTTCATCGGCGCGCCCAGCATCGACCTGCTGGTGCTGGCACTCTCC
GGGGGCAAGGGCGCGGGCTCCTTCCGCTCGCTCGACATCGGGGATCTGGCCGAGGGGCTCCACGCGAAGCTCCTGCCCCA
GCTCCGCACCGCCCAGGCGGCGCTGCCGAGGCTCGCGCCGGAGGCGTCGATCACCTTCGTGTCCGCCGCTTCGGCGGGCG
CGGCCATCCCCGGGACCGCGGGCCTGGCCGCCATCAACGCGGCGCTGGAGGCAGTGGTCCCGGTGCTGGCCGTCGAGCTC
GCGCCCATCCGCGTGAACGCAGTTTCGCCGGGCCTGGTGGACACGCCCTGGTGGGATGCGAGTCCACCCGAGGTGAAGGC
GGGCATGTTCGAGCAGGCCCGCAAGCGGTTCCCGGCCCGGCGCGTGGGGAGGCCGGAGGACCTGGCCGAGGTGATCGTCA
CGGTCGCGGCCAACCCGTACATGACGGGGACGGTCGTGACGTGCGACGGCGGCGGCCGGTGGGTCTCGGGCGCGTGA

Upstream 100 bases:

>100_bases
GGGCGGACGCGACAATCGCAGGGGAGCATATCGCTTGACGAGACGGCGTGTCTCGTTATTTCCATTACGGACCTCATCGT
CTCGTAAGGGAGAACGGACC

Downstream 100 bases:

>100_bases
GGGGTGCTTTCTCGATGGGCTCTCAGAGCGCCCACTTCGGAACCCTGTGGGCGCTCGCGACAGCCCGTGGGCGCCCATCG
AGAGCCCATGGCGCCCACAA

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: ORF6 [H]

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MDLKGKRALVVGGSSGIGLATARLLAARGARVTAAGRDRTKVAALGEGIEGAVLDAASPASLQEYFIGAPSIDLLVLALS
GGKGAGSFRSLDIGDLAEGLHAKLLPQLRTAQAALPRLAPEASITFVSAASAGAAIPGTAGLAAINAALEAVVPVLAVEL
APIRVNAVSPGLVDTPWWDASPPEVKAGMFEQARKRFPARRVGRPEDLAEVIVTVAANPYMTGTVVTCDGGGRWVSGA

Sequences:

>Translated_238_residues
MDLKGKRALVVGGSSGIGLATARLLAARGARVTAAGRDRTKVAALGEGIEGAVLDAASPASLQEYFIGAPSIDLLVLALS
GGKGAGSFRSLDIGDLAEGLHAKLLPQLRTAQAALPRLAPEASITFVSAASAGAAIPGTAGLAAINAALEAVVPVLAVEL
APIRVNAVSPGLVDTPWWDASPPEVKAGMFEQARKRFPARRVGRPEDLAEVIVTVAANPYMTGTVVTCDGGGRWVSGA
>Mature_238_residues
MDLKGKRALVVGGSSGIGLATARLLAARGARVTAAGRDRTKVAALGEGIEGAVLDAASPASLQEYFIGAPSIDLLVLALS
GGKGAGSFRSLDIGDLAEGLHAKLLPQLRTAQAALPRLAPEASITFVSAASAGAAIPGTAGLAAINAALEAVVPVLAVEL
APIRVNAVSPGLVDTPWWDASPPEVKAGMFEQARKRFPARRVGRPEDLAEVIVTVAANPYMTGTVVTCDGGGRWVSGA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI40254992, Length=235, Percent_Identity=29.3617021276596, Blast_Score=71, Evalue=7e-13,
Organism=Homo sapiens, GI32483357, Length=257, Percent_Identity=32.295719844358, Blast_Score=70, Evalue=1e-12,
Organism=Escherichia coli, GI87082100, Length=252, Percent_Identity=30.1587301587302, Blast_Score=67, Evalue=7e-13,
Organism=Escherichia coli, GI1787335, Length=250, Percent_Identity=28.8, Blast_Score=65, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17560332, Length=265, Percent_Identity=34.3396226415094, Blast_Score=84, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI17559104, Length=270, Percent_Identity=29.2592592592593, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17555706, Length=244, Percent_Identity=28.2786885245902, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17538486, Length=263, Percent_Identity=30.0380228136882, Blast_Score=68, Evalue=4e-12,
Organism=Saccharomyces cerevisiae, GI6324126, Length=249, Percent_Identity=29.3172690763052, Blast_Score=73, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24639444, Length=249, Percent_Identity=32.1285140562249, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI23397609, Length=250, Percent_Identity=29.6, Blast_Score=78, Evalue=6e-15,
Organism=Drosophila melanogaster, GI24643142, Length=180, Percent_Identity=32.7777777777778, Blast_Score=64, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 24005; Mature: 24005

Theoretical pI: Translated: 9.18; Mature: 9.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLKGKRALVVGGSSGIGLATARLLAARGARVTAAGRDRTKVAALGEGIEGAVLDAASPA
CCCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEECCCCCHHHHHHCCCCCCEEECCCCCH
SLQEYFIGAPSIDLLVLALSGGKGAGSFRSLDIGDLAEGLHAKLLPQLRTAQAALPRLAP
HHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
EASITFVSAASAGAAIPGTAGLAAINAALEAVVPVLAVELAPIRVNAVSPGLVDTPWWDA
CCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHEECCEEEECCCCCCCCCCCCCC
SPPEVKAGMFEQARKRFPARRVGRPEDLAEVIVTVAANPYMTGTVVTCDGGGRWVSGA
CCCHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHCCCCEEEEEEEEECCCCEECCCC
>Mature Secondary Structure
MDLKGKRALVVGGSSGIGLATARLLAARGARVTAAGRDRTKVAALGEGIEGAVLDAASPA
CCCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEECCCCCHHHHHHCCCCCCEEECCCCCH
SLQEYFIGAPSIDLLVLALSGGKGAGSFRSLDIGDLAEGLHAKLLPQLRTAQAALPRLAP
HHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
EASITFVSAASAGAAIPGTAGLAAINAALEAVVPVLAVELAPIRVNAVSPGLVDTPWWDA
CCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHEECCEEEECCCCCCCCCCCCCC
SPPEVKAGMFEQARKRFPARRVGRPEDLAEVIVTVAANPYMTGTVVTCDGGGRWVSGA
CCCHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHCCCCEEEEEEEEECCCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2583128; 9831526 [H]