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The map label for this gene is gspD [C]

Identifier: 220918104

GI number: 220918104

Start: 3330247

End: 3331680

Strand: Direct

Name: gspD [C]

Synonym: A2cp1_3007

Alternate gene names: 220918104

Gene position: 3330247-3331680 (Clockwise)

Preceding gene: 220918103

Following gene: 220918105

Centisome position: 66.22

GC content: 70.08

Gene sequence:

>1434_bases
ATGATCGCCCACACCTTGCTCGCGCTCGCGCTCTTCGCGACGCCCCTTCCCCCGGTGGAGCTGGCTGCCGGCGCGCTCCC
GCCACTCCGGATCGATCGCTCGGTGGGCGCGGGCTCCGAGCTGGCGCTGGAGGCTGGACAAAACCGCCTGCTCATCATCT
CCGAGGAGATCGGCCGCGTCGCGGTCGCGGACCCGAGCGTCGCCGACCTGAAGGTCGTCACCACGAACCAGCTCCTCCTC
ACCGCGAAGAGCTCGGGCACGACCGACCTCACGCTCTGGAACCGAAGCAACGAGCCGCTCGTCATCGCGCTGGTGGTCAC
CCGGAACCTGGAGCCGCTCCGCAAGCAGGTGAAGGACCTGTTCCCCGGCGAAAAGGTGACCATCACGGGCGCGGGCGAAC
TCGTGATCCTCTCCGGTGAGGTGAGCGACGTCCGCATCCCCGAGCGCCTCGTCGAGGTCGCCAAGCTCCACGCGAAGCAG
GTGGCGAACCTCGTCAAGGTGTCGGGGAACCAGCAGGTGCAGCTCGAGGTCCGCTTCGCCGAGGTGAGCCGGAGCGGCCT
CCGCCAGATCGGGGTGAACCTGTTCCACCAGTCGTCGAACGGCGAGGTGGTCACCGGTATGACGGGCCGCGGGATCATCC
CCACCGACCTCGGCGTCCCCGGGACCGGGACCGCCGGCGCGCCGCCCCCCATCTTCAGGCCGCAGTTCAACAACGGCTTC
TCCATGTTCGTGTCGTCGCTCTCGGGCGACTTCCCGTTCAGCGCGATGCTGAGCCTGCTCGAGCAGAATGGGCTGTCCAA
GACGCTCGCCGAGCCGACCCTGGTCACGCTCTCCGGGCAGCAGGCCCGCTTCGTGGCCGGCGGCGAGCTCCCCATCCCGC
TGGGCGGGTCCTTCGGCCAGACCCAGGTCGAGTGGAAGAAGTTCGGCATCCTGCTCGACTTCACCCCGACCGTGATCGCG
GGCGACACCATCCACCTCGATCTGAAGGCCGAGGTGAGCGACATCGACCAGAGCCTCGCGATCACCATCGGCGGCACCAC
GATTCCCGGGCTGACGTCTCGCCAGAGCGAGACCACCATCCGGCTCGGCGACGGTCAGAGCTTCGCGATCGCCGGCCTCC
TGTCCGACCGTGTCCGCTCGCAGATCGAGCGCGTCCCGCTGCTCGGGAGCATCCCGATCCTGGGCGCCCTGTTCCGCTCG
ACCCAGTACAAGCGGGAGGAGAGCGAGCTGCTGGTGGTGGTGACCGCGCGCCTCGCCCGGCCGGTGGCGCCGCACCAGCT
CCCGCCGCTCCCGACCGAGCGCGAGCTCAACCACCCCGGCGACATCGAGCTGTTCCTGCTCGGCTGGGACGACGGCGGCA
AGCAGGTCCCGCGGAGCGCGCCGTCGACGCGGCAGGCGGGTGGCCCGAGCGGCGCGCGCGGCTTCGTGCGCTGA

Upstream 100 bases:

>100_bases
GGCCGGCGCCCGCCGAGCCGGCGAAGGAGAAGCAGGTGGTCGAGATCCTCCGCGGCGATCTCTACGAAAAGCGCAACTTC
GAGGCGAAGGAGAGCCGTCG

Downstream 100 bases:

>100_bases
GGAGCATCACATGGCGACCGGTTCCATCCTGCTGGTTGGGGTCGCGACCGCGACCGAGCTGAAGCTCCGGGCCGCCATGC
CGGCGACCGGCTTCGTGGCG

Product: type II and III secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 477; Mature: 477

Protein sequence:

>477_residues
MIAHTLLALALFATPLPPVELAAGALPPLRIDRSVGAGSELALEAGQNRLLIISEEIGRVAVADPSVADLKVVTTNQLLL
TAKSSGTTDLTLWNRSNEPLVIALVVTRNLEPLRKQVKDLFPGEKVTITGAGELVILSGEVSDVRIPERLVEVAKLHAKQ
VANLVKVSGNQQVQLEVRFAEVSRSGLRQIGVNLFHQSSNGEVVTGMTGRGIIPTDLGVPGTGTAGAPPPIFRPQFNNGF
SMFVSSLSGDFPFSAMLSLLEQNGLSKTLAEPTLVTLSGQQARFVAGGELPIPLGGSFGQTQVEWKKFGILLDFTPTVIA
GDTIHLDLKAEVSDIDQSLAITIGGTTIPGLTSRQSETTIRLGDGQSFAIAGLLSDRVRSQIERVPLLGSIPILGALFRS
TQYKREESELLVVVTARLARPVAPHQLPPLPTERELNHPGDIELFLLGWDDGGKQVPRSAPSTRQAGGPSGARGFVR

Sequences:

>Translated_477_residues
MIAHTLLALALFATPLPPVELAAGALPPLRIDRSVGAGSELALEAGQNRLLIISEEIGRVAVADPSVADLKVVTTNQLLL
TAKSSGTTDLTLWNRSNEPLVIALVVTRNLEPLRKQVKDLFPGEKVTITGAGELVILSGEVSDVRIPERLVEVAKLHAKQ
VANLVKVSGNQQVQLEVRFAEVSRSGLRQIGVNLFHQSSNGEVVTGMTGRGIIPTDLGVPGTGTAGAPPPIFRPQFNNGF
SMFVSSLSGDFPFSAMLSLLEQNGLSKTLAEPTLVTLSGQQARFVAGGELPIPLGGSFGQTQVEWKKFGILLDFTPTVIA
GDTIHLDLKAEVSDIDQSLAITIGGTTIPGLTSRQSETTIRLGDGQSFAIAGLLSDRVRSQIERVPLLGSIPILGALFRS
TQYKREESELLVVVTARLARPVAPHQLPPLPTERELNHPGDIELFLLGWDDGGKQVPRSAPSTRQAGGPSGARGFVR
>Mature_477_residues
MIAHTLLALALFATPLPPVELAAGALPPLRIDRSVGAGSELALEAGQNRLLIISEEIGRVAVADPSVADLKVVTTNQLLL
TAKSSGTTDLTLWNRSNEPLVIALVVTRNLEPLRKQVKDLFPGEKVTITGAGELVILSGEVSDVRIPERLVEVAKLHAKQ
VANLVKVSGNQQVQLEVRFAEVSRSGLRQIGVNLFHQSSNGEVVTGMTGRGIIPTDLGVPGTGTAGAPPPIFRPQFNNGF
SMFVSSLSGDFPFSAMLSLLEQNGLSKTLAEPTLVTLSGQQARFVAGGELPIPLGGSFGQTQVEWKKFGILLDFTPTVIA
GDTIHLDLKAEVSDIDQSLAITIGGTTIPGLTSRQSETTIRLGDGQSFAIAGLLSDRVRSQIERVPLLGSIPILGALFRS
TQYKREESELLVVVTARLARPVAPHQLPPLPTERELNHPGDIELFLLGWDDGGKQVPRSAPSTRQAGGPSGARGFVR

Specific function: Involved in the secretion of an unknown compound (Potential) [H]

COG id: COG4964

COG function: function code U; Flp pilus assembly protein, secretin CpaC

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 BON domain [H]

Homologues:

Organism=Escherichia coli, GI87082242, Length=188, Percent_Identity=32.4468085106383, Blast_Score=86, Evalue=7e-18,
Organism=Escherichia coli, GI1789793, Length=253, Percent_Identity=28.0632411067194, Blast_Score=73, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR004846
- InterPro:   IPR007055 [H]

Pfam domain/function: PF04972 BON; PF00263 Secretin [H]

EC number: NA

Molecular weight: Translated: 50656; Mature: 50656

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAHTLLALALFATPLPPVELAAGALPPLRIDRSVGAGSELALEAGQNRLLIISEEIGRV
CHHHHHHHHHHHHCCCCCHHHHHCCCCCEEECCCCCCCCCEEHCCCCCEEEEEECCCCEE
AVADPSVADLKVVTTNQLLLTAKSSGTTDLTLWNRSNEPLVIALVVTRNLEPLRKQVKDL
EECCCCCCEEEEEEECEEEEEECCCCCEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHH
FPGEKVTITGAGELVILSGEVSDVRIPERLVEVAKLHAKQVANLVKVSGNQQVQLEVRFA
CCCCEEEEEECCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHEECCCCEEEEEEEEE
EVSRSGLRQIGVNLFHQSSNGEVVTGMTGRGIIPTDLGVPGTGTAGAPPPIFRPQFNNGF
HHHHHHHHHHCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
SMFVSSLSGDFPFSAMLSLLEQNGLSKTLAEPTLVTLSGQQARFVAGGELPIPLGGSFGQ
HHHHHHHCCCCCHHHHHHHHHHCCCHHHHCCCEEEEECCCCEEEEECCCCCCCCCCCCCC
TQVEWKKFGILLDFTPTVIAGDTIHLDLKAEVSDIDQSLAITIGGTTIPGLTSRQSETTI
CEEEEEHEEEEEECCCCEEECCEEEEEEECCHHCCCCEEEEEECCCCCCCCCCCCCCCEE
RLGDGQSFAIAGLLSDRVRSQIERVPLLGSIPILGALFRSTQYKREESELLVVVTARLAR
EECCCCCEEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEHHHCC
PVAPHQLPPLPTERELNHPGDIELFLLGWDDGGKQVPRSAPSTRQAGGPSGARGFVR
CCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MIAHTLLALALFATPLPPVELAAGALPPLRIDRSVGAGSELALEAGQNRLLIISEEIGRV
CHHHHHHHHHHHHCCCCCHHHHHCCCCCEEECCCCCCCCCEEHCCCCCEEEEEECCCCEE
AVADPSVADLKVVTTNQLLLTAKSSGTTDLTLWNRSNEPLVIALVVTRNLEPLRKQVKDL
EECCCCCCEEEEEEECEEEEEECCCCCEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHH
FPGEKVTITGAGELVILSGEVSDVRIPERLVEVAKLHAKQVANLVKVSGNQQVQLEVRFA
CCCCEEEEEECCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHEECCCCEEEEEEEEE
EVSRSGLRQIGVNLFHQSSNGEVVTGMTGRGIIPTDLGVPGTGTAGAPPPIFRPQFNNGF
HHHHHHHHHHCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
SMFVSSLSGDFPFSAMLSLLEQNGLSKTLAEPTLVTLSGQQARFVAGGELPIPLGGSFGQ
HHHHHHHCCCCCHHHHHHHHHHCCCHHHHCCCEEEEECCCCEEEEECCCCCCCCCCCCCC
TQVEWKKFGILLDFTPTVIAGDTIHLDLKAEVSDIDQSLAITIGGTTIPGLTSRQSETTI
CEEEEEHEEEEEECCCCEEECCEEEEEEECCHHCCCCEEEEEECCCCCCCCCCCCCCCEE
RLGDGQSFAIAGLLSDRVRSQIERVPLLGSIPILGALFRSTQYKREESELLVVVTARLAR
EECCCCCEEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEHHHCC
PVAPHQLPPLPTERELNHPGDIELFLLGWDDGGKQVPRSAPSTRQAGGPSGARGFVR
CCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]