Click here to switch to the map view.

The map label for this gene is arnB [H]

Identifier: 220917924

GI number: 220917924

Start: 3124109

End: 3125299

Strand: Reverse

Name: arnB [H]

Synonym: A2cp1_2825

Alternate gene names: 220917924

Gene position: 3125299-3124109 (Counterclockwise)

Preceding gene: 220917925

Following gene: 220917923

Centisome position: 62.14

GC content: 77.33

Gene sequence:

>1191_bases
GTGGCGGTGAGCCGAGCGATGGCGCTGCGCGGCGGGACGGCGGCCGGGCCCGCGCGGCGGCGCTACATCCCGGCGCTGCC
CACGCTCTGGCCCGGGATGCTCTCGCCGCTGGCGGCCGACCGGCCGCCTCCCTTCCCGTTCGGCGCCCCGCGCATGGTGC
CCTTCTACTTCGCGCGGAACGCGGTGTTCCACGCGGTGCGGCTGCTCGGGCTGGCGGGGCGCGAGGTGCTGGTGCCCGCG
TACCACCACGGCGTGGAGATCTCGGCCCTGGCCGCCGCCGGGGCCATCCCGGTGTTCGTGCGCGTGGACGGCCGCATGCG
GCTCGATCTCGAAGACCTCGAGGCGCGCCGGGGGCCGCGCGCCGGCGCGATCTACGTCATCCACTACGCCGGGTTCCCGC
AGCCCATGGACGAGATCCGGACGCTGGCGCGGCGGGCGGGGCTGCCGGTCATCGAGGACTGCGCGCTCTCGCTGCTGTCC
GCGGAGGGGACCCGCCCGCTCGGCTCCACCGGCGACCTCTCGATCTTCTGCTTCTACAAGGCGCTCCCGGTGCCGAACGG
CGGGGCCCTGGTGGTGAACGCGCCCGGCATCGCCGCCGAGCTGCCCGAGCCCGAGGCCGCACCGCTCGCCTCGACGCTGT
CCCACGCGGCCGGCGCGCTGCTCGCGAACGCGGCGTTCCGGCTCGGGGAGACGGGCGTGGCGCTCCGGGCCGCCGCGCGC
GGCGTGGTTCGCGCGGCGCGCGGCACCTCCGGCCGGCTCCGCCCCGTCTCCACCGGCACGAGCACGTTCGACCCGGGCGC
GGTGGGGCTGGGCATGAGCGGGCTCTCCGCCGCCATCGCCCGGCGACTGGACGCGCGCGCCATCGTGGACGCGCGGCGCC
GGAACTACTTCCTGCTGCTGGGGCGCCTCCGCGATCTCGCGCCGCCGCCGTTCACCGAGGTGCCCGCGGGCGCCGCGCCG
CTGTTCTACCCGCTGCCCTGCGACGACAAGGCGGCGGTGCGCTCGCGCCTGGCCGCGCGCGGCATCGAGACGGTGGACTT
CTGGCGCACCGGCCACCCGCTCTGCCCGCCCGAGGCGTTCCCCGAGGTGGCGGCGCTGCGCCGGCGCGTGCTGGAGCTGC
CGGTCCACCAGGACCTCCAGCCGGAGGACATGGCCTACCTGGCGGCCTGCGTCCGCGAGGCGCTCGAGTGA

Upstream 100 bases:

>100_bases
CCCATGACTGGCTCTACGTGTACCGCCCGTCGATCGCCGGCCGGGCCATGCACACGTTGAAGCACCGGGTGCGCCCGGCG
GTGAAGGAGGCCCTCTCGTG

Downstream 100 bases:

>100_bases
CGGCGCCCGCGCGGTCGTCGCTCCTGGAGGTCCGGTGCTCGACGGCCCCGGCGCGGCTCGACGCGCTGCGGCCCGAGTGG
TCGGCGCTGCTCGATCAGGC

Product: DegT/DnrJ/EryC1/StrS aminotransferase

Products: NA

Alternate protein names: UDP-(beta-L-threo-pentapyranosyl-4''-ulose diphosphate) aminotransferase; UDP-Ara4O aminotransferase; UDP-4-amino-4-deoxy-L-arabinose aminotransferase [H]

Number of amino acids: Translated: 396; Mature: 395

Protein sequence:

>396_residues
MAVSRAMALRGGTAAGPARRRYIPALPTLWPGMLSPLAADRPPPFPFGAPRMVPFYFARNAVFHAVRLLGLAGREVLVPA
YHHGVEISALAAAGAIPVFVRVDGRMRLDLEDLEARRGPRAGAIYVIHYAGFPQPMDEIRTLARRAGLPVIEDCALSLLS
AEGTRPLGSTGDLSIFCFYKALPVPNGGALVVNAPGIAAELPEPEAAPLASTLSHAAGALLANAAFRLGETGVALRAAAR
GVVRAARGTSGRLRPVSTGTSTFDPGAVGLGMSGLSAAIARRLDARAIVDARRRNYFLLLGRLRDLAPPPFTEVPAGAAP
LFYPLPCDDKAAVRSRLAARGIETVDFWRTGHPLCPPEAFPEVAALRRRVLELPVHQDLQPEDMAYLAACVREALE

Sequences:

>Translated_396_residues
MAVSRAMALRGGTAAGPARRRYIPALPTLWPGMLSPLAADRPPPFPFGAPRMVPFYFARNAVFHAVRLLGLAGREVLVPA
YHHGVEISALAAAGAIPVFVRVDGRMRLDLEDLEARRGPRAGAIYVIHYAGFPQPMDEIRTLARRAGLPVIEDCALSLLS
AEGTRPLGSTGDLSIFCFYKALPVPNGGALVVNAPGIAAELPEPEAAPLASTLSHAAGALLANAAFRLGETGVALRAAAR
GVVRAARGTSGRLRPVSTGTSTFDPGAVGLGMSGLSAAIARRLDARAIVDARRRNYFLLLGRLRDLAPPPFTEVPAGAAP
LFYPLPCDDKAAVRSRLAARGIETVDFWRTGHPLCPPEAFPEVAALRRRVLELPVHQDLQPEDMAYLAACVREALE
>Mature_395_residues
AVSRAMALRGGTAAGPARRRYIPALPTLWPGMLSPLAADRPPPFPFGAPRMVPFYFARNAVFHAVRLLGLAGREVLVPAY
HHGVEISALAAAGAIPVFVRVDGRMRLDLEDLEARRGPRAGAIYVIHYAGFPQPMDEIRTLARRAGLPVIEDCALSLLSA
EGTRPLGSTGDLSIFCFYKALPVPNGGALVVNAPGIAAELPEPEAAPLASTLSHAAGALLANAAFRLGETGVALRAAARG
VVRAARGTSGRLRPVSTGTSTFDPGAVGLGMSGLSAAIARRLDARAIVDARRRNYFLLLGRLRDLAPPPFTEVPAGAAPL
FYPLPCDDKAAVRSRLAARGIETVDFWRTGHPLCPPEAFPEVAALRRRVLELPVHQDLQPEDMAYLAACVREALE

Specific function: Catalyzes the conversion of UDP-4-keto-arabinose (UDP- Ara4O) to UDP-4-amino-4-deoxy-L-arabinose (UDP-L-Ara4N). The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides [H]

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family. ArnB subfamily [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=132, Percent_Identity=33.3333333333333, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022850
- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: =2.6.1.87 [H]

Molecular weight: Translated: 42008; Mature: 41877

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVSRAMALRGGTAAGPARRRYIPALPTLWPGMLSPLAADRPPPFPFGAPRMVPFYFARN
CCCCHHHHHCCCCCCCCHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
AVFHAVRLLGLAGREVLVPAYHHGVEISALAAAGAIPVFVRVDGRMRLDLEDLEARRGPR
HHHHHHHHHHHCCCEEEEEHHHCCEEEEHHHHCCCCEEEEEECCEEEECHHHHHHHCCCC
AGAIYVIHYAGFPQPMDEIRTLARRAGLPVIEDCALSLLSAEGTRPLGSTGDLSIFCFYK
CCEEEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEE
ALPVPNGGALVVNAPGIAAELPEPEAAPLASTLSHAAGALLANAAFRLGETGVALRAAAR
ECCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
GVVRAARGTSGRLRPVSTGTSTFDPGAVGLGMSGLSAAIARRLDARAIVDARRRNYFLLL
HHHHHHCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEE
GRLRDLAPPPFTEVPAGAAPLFYPLPCDDKAAVRSRLAARGIETVDFWRTGHPLCPPEAF
EHHHHCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCC
PEVAALRRRVLELPVHQDLQPEDMAYLAACVREALE
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AVSRAMALRGGTAAGPARRRYIPALPTLWPGMLSPLAADRPPPFPFGAPRMVPFYFARN
CCCHHHHHCCCCCCCCHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
AVFHAVRLLGLAGREVLVPAYHHGVEISALAAAGAIPVFVRVDGRMRLDLEDLEARRGPR
HHHHHHHHHHHCCCEEEEEHHHCCEEEEHHHHCCCCEEEEEECCEEEECHHHHHHHCCCC
AGAIYVIHYAGFPQPMDEIRTLARRAGLPVIEDCALSLLSAEGTRPLGSTGDLSIFCFYK
CCEEEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEE
ALPVPNGGALVVNAPGIAAELPEPEAAPLASTLSHAAGALLANAAFRLGETGVALRAAAR
ECCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
GVVRAARGTSGRLRPVSTGTSTFDPGAVGLGMSGLSAAIARRLDARAIVDARRRNYFLLL
HHHHHHCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEE
GRLRDLAPPPFTEVPAGAAPLFYPLPCDDKAAVRSRLAARGIETVDFWRTGHPLCPPEAF
EHHHHCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCC
PEVAALRRRVLELPVHQDLQPEDMAYLAACVREALE
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA