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The map label for this gene is ycdC [C]

Identifier: 220917875

GI number: 220917875

Start: 3063331

End: 3063960

Strand: Direct

Name: ycdC [C]

Synonym: A2cp1_2776

Alternate gene names: 220917875

Gene position: 3063331-3063960 (Clockwise)

Preceding gene: 220917874

Following gene: 220917876

Centisome position: 60.91

GC content: 75.08

Gene sequence:

>630_bases
ATGGCACCCTCCCCTCCCCGCAAGCGCGACGCGCAGGCCACCCGGGCCGGGCTGCTCGAGACCGCCGGCCGCGCGTTCGC
GGAGCACGGCTACGACGGCGCGCGCATCGACGACATCGCGGCGCGCGCCGGCGTGAACAAGCGGATGATCTACGCCTACT
TCGGCGACAAGGACGGCCTGTACCGCGCCGTGCTCGACGCCCACCTGACGCGCGCGCTCGCGGCCGCCGAGCCCCCGGCC
GCAGGGGCGCGCGCGGCACCGCGCGAGGAGGTGGAGACGCTGGTGCGCCGCTTCTTCGGGTTCCTCTCCGAGCACGAGGA
CTTCGTGCGGCTGATGGGCTGGGAGGCGCTCTCGCGCGCCCGCCGCGGCCGCAAGCTCCTCGCCGACCGGATCGCCGCGA
ACCTCGACCCCATCCACGCGGTGCTGCGGCGCGGCGTGGCCCAGGGCGCGTTCCGCGCCGACCTGGACCCGCGCACGCTC
ACCATGAGCGTCAACGCCCTGATGCTCGGCTACTTCCTGCAGCGCCCGTTCCTGGAGGCGCTGTGGTCCACCGACCTGCG
CGCCGCCCGCGCGCGCGAGGCCGTGCTGCGCGACTTCGTGCGCCTCCTCCTCGACGGTATCGGAGCCTGA

Upstream 100 bases:

>100_bases
GGCGTCGCTCCGCCGCACCCACCCACCCCGCTTGATCCGGCGCCGGCGGCGCGCTAGAAGAGCGCGATGCGGAAGTAACT
AACCGGTTATATACTTCGCC

Downstream 100 bases:

>100_bases
GATGACCCGCCGCCTCCTCCCCTTGCTCCTCGCGCACGCCGCGCTCCTCGCCGCCTGCGGCGATCGCGCGCCTGCGCCCA
TCACCGGCCTGGTGGACGCG

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Transcriptional Regulator Protein; Transcriptional Regulator Protein TetR Family; TetR Family Transcriptional Regulatory Protein; TRANSCRIPTIONal REGULATOR TetR Family; Transcription Regulator Protein Tetr-Like; TetR/AcrR Family Transcriptional Regulator

Number of amino acids: Translated: 209; Mature: 208

Protein sequence:

>209_residues
MAPSPPRKRDAQATRAGLLETAGRAFAEHGYDGARIDDIAARAGVNKRMIYAYFGDKDGLYRAVLDAHLTRALAAAEPPA
AGARAAPREEVETLVRRFFGFLSEHEDFVRLMGWEALSRARRGRKLLADRIAANLDPIHAVLRRGVAQGAFRADLDPRTL
TMSVNALMLGYFLQRPFLEALWSTDLRAARAREAVLRDFVRLLLDGIGA

Sequences:

>Translated_209_residues
MAPSPPRKRDAQATRAGLLETAGRAFAEHGYDGARIDDIAARAGVNKRMIYAYFGDKDGLYRAVLDAHLTRALAAAEPPA
AGARAAPREEVETLVRRFFGFLSEHEDFVRLMGWEALSRARRGRKLLADRIAANLDPIHAVLRRGVAQGAFRADLDPRTL
TMSVNALMLGYFLQRPFLEALWSTDLRAARAREAVLRDFVRLLLDGIGA
>Mature_208_residues
APSPPRKRDAQATRAGLLETAGRAFAEHGYDGARIDDIAARAGVNKRMIYAYFGDKDGLYRAVLDAHLTRALAAAEPPAA
GARAAPREEVETLVRRFFGFLSEHEDFVRLMGWEALSRARRGRKLLADRIAANLDPIHAVLRRGVAQGAFRADLDPRTLT
MSVNALMLGYFLQRPFLEALWSTDLRAARAREAVLRDFVRLLLDGIGA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23113; Mature: 22982

Theoretical pI: Translated: 10.66; Mature: 10.66

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPSPPRKRDAQATRAGLLETAGRAFAEHGYDGARIDDIAARAGVNKRMIYAYFGDKDGL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCEEEEEECCCCHH
YRAVLDAHLTRALAAAEPPAAGARAAPREEVETLVRRFFGFLSEHEDFVRLMGWEALSRA
HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRGRKLLADRIAANLDPIHAVLRRGVAQGAFRADLDPRTLTMSVNALMLGYFLQRPFLEA
HHHHHHHHHHHHCCCCHHHHHHHHHHHHCHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHH
LWSTDLRAARAREAVLRDFVRLLLDGIGA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
APSPPRKRDAQATRAGLLETAGRAFAEHGYDGARIDDIAARAGVNKRMIYAYFGDKDGL
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCEEEEEECCCCHH
YRAVLDAHLTRALAAAEPPAAGARAAPREEVETLVRRFFGFLSEHEDFVRLMGWEALSRA
HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRGRKLLADRIAANLDPIHAVLRRGVAQGAFRADLDPRTLTMSVNALMLGYFLQRPFLEA
HHHHHHHHHHHHCCCCHHHHHHHHHHHHCHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHH
LWSTDLRAARAREAVLRDFVRLLLDGIGA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA