| Definition | Anaeromyxobacter dehalogenans 2CP-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011891 |
| Length | 5,029,329 |
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The map label for this gene is lptD [H]
Identifier: 220917795
GI number: 220917795
Start: 2975286
End: 2977736
Strand: Reverse
Name: lptD [H]
Synonym: A2cp1_2696
Alternate gene names: 220917795
Gene position: 2977736-2975286 (Counterclockwise)
Preceding gene: 220917796
Following gene: 220917794
Centisome position: 59.21
GC content: 78.05
Gene sequence:
>2451_bases GTGATCGCGCTCGCTGCAGTCGCCGCGGCAGGGCTGCTCGCCCTGTCCGCCCCGCCGTCCATCCCCGCCACCGCCGAGGA TCTGACGGTCGAGGCCGGCTCGGTCACGTACCGGGCCGACACCGGCCGCTACCAGCTCGAGGGCGGGGTGGTGCTGCGGC GCGGGGTGGTGACGCTGCGCGCCCGGAGCGCCTCGTACGACCCGTCCACCGGCGAGGTGGACGCGGTCGGCGACGTGCTG CTCACCGACGCGACCCGGGCGGTGGCGGCCGACGGCCTGCGCGCCGTGATGGACGGCGGCTTCAAGACCGAGCACGTGGT GGCCTTCCTCAAGGAGGGGCCGGTGGCGATGGGCGACGCCACCGGCGCCGAGGACGCGCGCCGGCGGGGCCGCAACCGGG CCACGTTCACCGGCGCGACGCTGGAGGGCGAGCGCTCCGGCCACCTGCGCCTCGGCGACGCGCGCCTGACCCTGTGCGAC TGCGGCGGCGGCGCGCCGTCGTGGGAGCTGCGCGCCCGGCGCGCGGAGGTGGAGCCGGGGCACCACGCCACCCTGTCCTG GCCGGTGCTCTACGTCACCCCGCGCTTCCTGTTCGTGAAGCGCCCGGTGCCGGTGCTGATCCTGCCGTGGATCTTCCTCC CGCTCGGCGAGCGGCAGAGCGGCCTGCTGTTCCCCTCGGTCGCCTCCACCGGCGCGACCGGGTTCGGGGTCGCGCTGCCG GTGTTCGTGACGCTGGGCCGGAGCGCGGACGCGACGCTCACCCCCGAGTACCTGTTCGGCCGCGCGCGCGCCGACGTGGC CGACGGGCAGCCGGCGGTGCGCGGCTGGGGGCTGCGGCTCGAGCTGCGCTGGGCCCCGGCCGAGGACGCGGCCGGGGAGA TCGAGCTGCACGGGATCGACGACCAGGACCGGGAGCCGGGCGGCGCCGGCGGTGGCCGGCTCGGGATCGTGGGCACGCAC GGCCAGCGGCTGGGCGCGTCCGGCCGGCTGCGCGCCGACGTGGCGCTCGCGAGCGATCCGGTCTGGTTCCGCGACGCCAC CGGCGACCTGCTGCTGCGCAGCGCCTACTACCGGCGCTCGGCGCTGCTCGCGTCCTTCGCCGGCGACGCGCTGGTGGTGG AGGGCGGCGCCGCGTACCACCAGCCGCTCACGCCCTCCGGCTGGTACCCGGACGCCACCGGCGCGCGGCCCGGCTACGGC ACGTTCGGCGCCGACCTGCCCACGTTCCACCGCTGGCCCGGCCTGGCGGCGACGCTGCTCCCGGAGGCGCTCGGGCCGGT CCAGGTCTCCGGGCGGCTCGGCCTCTCGCGCTACGCCACCGTGAACGGCGACACCGGCGCCACGTTCACCGCCGGCGATC CCGGCGCCACCCGCGGCTTCGTCACCACCTCGCGCGAGGGCGTGAGCCGGCTCGACGCGCGCGCCGAGCTGGCGGCCCCG CTCCGGCTCGGGTCCGCGCTGACGGTGACGCCGTACGCGCGCGGCGCCGCGCTCGGCTACCGCTTCGACACCGGGCGCTC GCCGGCGGTGGTGGCCTGGGGCGTCGGCGGCGCGGCGCTGTCCTCCGAGGTGTCGCGCCGCTACGGCGCGGTGCTCCACC GGATCGTGCCGCGGCTGGAGCTGCGCGCGGGCACGCGGGCGTTCGGGTCGGAGGACGGGGCGCTGCCGCTGCGCGCGTAC GACGTCTGGGACCGGGTGGGCGACGACGTGCAGCGCGGACCGGTGTCCGTCGCGGAGCCCGCGGGCCAGCCCGCCGGCTC GCTGACCGCCGCGTCCGACGGCACCTTCCGCCAGCTCCGTGCCTCGGTGGAGAGCCGCCTCGACGGGCCCGGCGGCAGCC TGCGCCTCCAGCTCGGCCAGGACGTCGACCTCGTCGGCGGCGTCGCCGGCGAGACGTTCTTCTCGGCCGCGGCGCACCGC GGCCCCGTCACCGCCGAGGTGTCCGGGCGCGTCCTCGCGTTCCAGGGGCGGGCGGTGGCCGCGCCGGCGCCGAGGTTCCC GTCGTGGCTCGACCACTTCACCGAGCTGCACGGGGCGATCACCGCCGCCGACCGGCGCGGCGACCTGGTCCGCGCCGGGC TGGTCGCGGTGGGCCCGGGCGCGTCCGGCCAGCTCATGGCCGGGGTGGACGCGCTGTTCGATCTCCGGCCCGCGGCGATC GACGCCTCGGCGCAGGGCTCGGCCGGCTTCCGCGGCGTGCTCGGCGGCGCCACGCTCGGCTACGACGCGCTGTTCACGGT GCGCCCGATCGAGGTCGCGCGCTGCAGCGGCGCCGGGACCCGCCGCGTGGACGCCGGGCAGGTGCAGCAGCACGCCGGGA GCGTCACCTGGAACTCGCCGTGCCACTGCTTCCTCGCGCGGCTCGTGGTCCGGGTGAACGACTGCGGCGAGACGTCGTAC TCGGCCGCGGTGGATCTCTCCCGGTTGGGCGAGCGCGCCGCGGTGCGTTGA
Upstream 100 bases:
>100_bases CGCGGATGCGGACGCGCCGTCCGAGGCCGCGCCGGCAGCGGACGCCGCCCCGGCCGAGACCGCCGCGGCGCCGGCGCGGT AGGCGCCAGGCCCCGCGCCC
Downstream 100 bases:
>100_bases GGCGCCAGGGGGCGGGAGCCCGGCCGGATTCACCCTGCGTGCGCGGCCGGGCGATCCCGGGAGGGTAAATCGCCGCCGGC GCGGATTCGGCGGTTGCCGG
Product: OstA family protein
Products: NA
Alternate protein names: Organic solvent tolerance protein [H]
Number of amino acids: Translated: 816; Mature: 816
Protein sequence:
>816_residues MIALAAVAAAGLLALSAPPSIPATAEDLTVEAGSVTYRADTGRYQLEGGVVLRRGVVTLRARSASYDPSTGEVDAVGDVL LTDATRAVAADGLRAVMDGGFKTEHVVAFLKEGPVAMGDATGAEDARRRGRNRATFTGATLEGERSGHLRLGDARLTLCD CGGGAPSWELRARRAEVEPGHHATLSWPVLYVTPRFLFVKRPVPVLILPWIFLPLGERQSGLLFPSVASTGATGFGVALP VFVTLGRSADATLTPEYLFGRARADVADGQPAVRGWGLRLELRWAPAEDAAGEIELHGIDDQDREPGGAGGGRLGIVGTH GQRLGASGRLRADVALASDPVWFRDATGDLLLRSAYYRRSALLASFAGDALVVEGGAAYHQPLTPSGWYPDATGARPGYG TFGADLPTFHRWPGLAATLLPEALGPVQVSGRLGLSRYATVNGDTGATFTAGDPGATRGFVTTSREGVSRLDARAELAAP LRLGSALTVTPYARGAALGYRFDTGRSPAVVAWGVGGAALSSEVSRRYGAVLHRIVPRLELRAGTRAFGSEDGALPLRAY DVWDRVGDDVQRGPVSVAEPAGQPAGSLTAASDGTFRQLRASVESRLDGPGGSLRLQLGQDVDLVGGVAGETFFSAAAHR GPVTAEVSGRVLAFQGRAVAAPAPRFPSWLDHFTELHGAITAADRRGDLVRAGLVAVGPGASGQLMAGVDALFDLRPAAI DASAQGSAGFRGVLGGATLGYDALFTVRPIEVARCSGAGTRRVDAGQVQQHAGSVTWNSPCHCFLARLVVRVNDCGETSY SAAVDLSRLGERAAVR
Sequences:
>Translated_816_residues MIALAAVAAAGLLALSAPPSIPATAEDLTVEAGSVTYRADTGRYQLEGGVVLRRGVVTLRARSASYDPSTGEVDAVGDVL LTDATRAVAADGLRAVMDGGFKTEHVVAFLKEGPVAMGDATGAEDARRRGRNRATFTGATLEGERSGHLRLGDARLTLCD CGGGAPSWELRARRAEVEPGHHATLSWPVLYVTPRFLFVKRPVPVLILPWIFLPLGERQSGLLFPSVASTGATGFGVALP VFVTLGRSADATLTPEYLFGRARADVADGQPAVRGWGLRLELRWAPAEDAAGEIELHGIDDQDREPGGAGGGRLGIVGTH GQRLGASGRLRADVALASDPVWFRDATGDLLLRSAYYRRSALLASFAGDALVVEGGAAYHQPLTPSGWYPDATGARPGYG TFGADLPTFHRWPGLAATLLPEALGPVQVSGRLGLSRYATVNGDTGATFTAGDPGATRGFVTTSREGVSRLDARAELAAP LRLGSALTVTPYARGAALGYRFDTGRSPAVVAWGVGGAALSSEVSRRYGAVLHRIVPRLELRAGTRAFGSEDGALPLRAY DVWDRVGDDVQRGPVSVAEPAGQPAGSLTAASDGTFRQLRASVESRLDGPGGSLRLQLGQDVDLVGGVAGETFFSAAAHR GPVTAEVSGRVLAFQGRAVAAPAPRFPSWLDHFTELHGAITAADRRGDLVRAGLVAVGPGASGQLMAGVDALFDLRPAAI DASAQGSAGFRGVLGGATLGYDALFTVRPIEVARCSGAGTRRVDAGQVQQHAGSVTWNSPCHCFLARLVVRVNDCGETSY SAAVDLSRLGERAAVR >Mature_816_residues MIALAAVAAAGLLALSAPPSIPATAEDLTVEAGSVTYRADTGRYQLEGGVVLRRGVVTLRARSASYDPSTGEVDAVGDVL LTDATRAVAADGLRAVMDGGFKTEHVVAFLKEGPVAMGDATGAEDARRRGRNRATFTGATLEGERSGHLRLGDARLTLCD CGGGAPSWELRARRAEVEPGHHATLSWPVLYVTPRFLFVKRPVPVLILPWIFLPLGERQSGLLFPSVASTGATGFGVALP VFVTLGRSADATLTPEYLFGRARADVADGQPAVRGWGLRLELRWAPAEDAAGEIELHGIDDQDREPGGAGGGRLGIVGTH GQRLGASGRLRADVALASDPVWFRDATGDLLLRSAYYRRSALLASFAGDALVVEGGAAYHQPLTPSGWYPDATGARPGYG TFGADLPTFHRWPGLAATLLPEALGPVQVSGRLGLSRYATVNGDTGATFTAGDPGATRGFVTTSREGVSRLDARAELAAP LRLGSALTVTPYARGAALGYRFDTGRSPAVVAWGVGGAALSSEVSRRYGAVLHRIVPRLELRAGTRAFGSEDGALPLRAY DVWDRVGDDVQRGPVSVAEPAGQPAGSLTAASDGTFRQLRASVESRLDGPGGSLRLQLGQDVDLVGGVAGETFFSAAAHR GPVTAEVSGRVLAFQGRAVAAPAPRFPSWLDHFTELHGAITAADRRGDLVRAGLVAVGPGASGQLMAGVDALFDLRPAAI DASAQGSAGFRGVLGGATLGYDALFTVRPIEVARCSGAGTRRVDAGQVQQHAGSVTWNSPCHCFLARLVVRVNDCGETSY SAAVDLSRLGERAAVR
Specific function: Involved in the assembly of LPS in the outer leaflet of the outer membrane. Determines N-hexane tolerance and is involved in outer membrane permeability. Essential for envelope biogenesis [H]
COG id: COG1452
COG function: function code M; Organic solvent tolerance protein OstA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the lptD family [H]
Homologues:
None
Paralogues:
None
Copy number: 60 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020889 - InterPro: IPR005653 - InterPro: IPR007543 [H]
Pfam domain/function: PF03968 OstA; PF04453 OstA_C [H]
EC number: NA
Molecular weight: Translated: 84829; Mature: 84829
Theoretical pI: Translated: 7.66; Mature: 7.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIALAAVAAAGLLALSAPPSIPATAEDLTVEAGSVTYRADTGRYQLEGGVVLRRGVVTLR CEEHHHHHHHHHEEECCCCCCCCCCCCEEEECCCEEEEECCCCEEECCCEEEECCEEEEE ARSASYDPSTGEVDAVGDVLLTDATRAVAADGLRAVMDGGFKTEHVVAFLKEGPVAMGDA ECCCCCCCCCCCCHHCCCEEECCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCC TGAEDARRRGRNRATFTGATLEGERSGHLRLGDARLTLCDCGGGAPSWELRARRAEVEPG CCHHHHHHCCCCCEEEEEEEECCCCCCCEEECCCEEEEEECCCCCCCHHHHHEECCCCCC HHATLSWPVLYVTPRFLFVKRPVPVLILPWIFLPLGERQSGLLFPSVASTGATGFGVALP CCCEEECEEEEECCEEEEEECCCCEEEECHHHHCCCCCCCCEEECCHHCCCCCCHHHHEE VFVTLGRSADATLTPEYLFGRARADVADGQPAVRGWGLRLELRWAPAEDAAGEIELHGID HHHEECCCCCCCCCHHHHHCCCCCCCCCCCCCEEECEEEEEEEECCCCCCCCEEEEECCC DQDREPGGAGGGRLGIVGTHGQRLGASGRLRADVALASDPVWFRDATGDLLLRSAYYRRS CCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCEEEECCCCHHHHHHHHHHHH ALLASFAGDALVVEGGAAYHQPLTPSGWYPDATGARPGYGTFGADLPTFHRWPGLAATLL HHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCHHHHHH PEALGPVQVSGRLGLSRYATVNGDTGATFTAGDPGATRGFVTTSREGVSRLDARAELAAP HHHCCCEEECCCCCCEEEEEECCCCCCEEECCCCCCCCCEEEECHHHHHHHHHHHHHHHH LRLGSALTVTPYARGAALGYRFDTGRSPAVVAWGVGGAALSSEVSRRYGAVLHRIVPRLE HHCCCEEEECCCCCCCEEEEEECCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH LRAGTRAFGSEDGALPLRAYDVWDRVGDDVQRGPVSVAEPAGQPAGSLTAASDGTFRQLR HCCCCCCCCCCCCCCEEEHHHHHHHHCCHHHHCCCCCCCCCCCCCCCEEECCCCHHHHHH ASVESRLDGPGGSLRLQLGQDVDLVGGVAGETFFSAAAHRGPVTAEVSGRVLAFQGRAVA HHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEECCCEEEEEECCEEE APAPRFPSWLDHFTELHGAITAADRRGDLVRAGLVAVGPGASGQLMAGVDALFDLRPAAI CCCCCCHHHHHHHHHHHHHEEECCCCCCEEEECEEEECCCCCCCHHHHHHHHHHCCCHHC DASAQGSAGFRGVLGGATLGYDALFTVRPIEVARCSGAGTRRVDAGQVQQHAGSVTWNSP CCCCCCCCCCCEECCCCCCCCCEEEEECCEEEEECCCCCCCCCCHHHHHHHCCCCCCCCC CHCFLARLVVRVNDCGETSYSAAVDLSRLGERAAVR HHHHHHHHHHHHCCCCCCCHHHHHHHHHHCHHHCCC >Mature Secondary Structure MIALAAVAAAGLLALSAPPSIPATAEDLTVEAGSVTYRADTGRYQLEGGVVLRRGVVTLR CEEHHHHHHHHHEEECCCCCCCCCCCCEEEECCCEEEEECCCCEEECCCEEEECCEEEEE ARSASYDPSTGEVDAVGDVLLTDATRAVAADGLRAVMDGGFKTEHVVAFLKEGPVAMGDA ECCCCCCCCCCCCHHCCCEEECCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCC TGAEDARRRGRNRATFTGATLEGERSGHLRLGDARLTLCDCGGGAPSWELRARRAEVEPG CCHHHHHHCCCCCEEEEEEEECCCCCCCEEECCCEEEEEECCCCCCCHHHHHEECCCCCC HHATLSWPVLYVTPRFLFVKRPVPVLILPWIFLPLGERQSGLLFPSVASTGATGFGVALP CCCEEECEEEEECCEEEEEECCCCEEEECHHHHCCCCCCCCEEECCHHCCCCCCHHHHEE VFVTLGRSADATLTPEYLFGRARADVADGQPAVRGWGLRLELRWAPAEDAAGEIELHGID HHHEECCCCCCCCCHHHHHCCCCCCCCCCCCCEEECEEEEEEEECCCCCCCCEEEEECCC DQDREPGGAGGGRLGIVGTHGQRLGASGRLRADVALASDPVWFRDATGDLLLRSAYYRRS CCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCEEEECCCCHHHHHHHHHHHH ALLASFAGDALVVEGGAAYHQPLTPSGWYPDATGARPGYGTFGADLPTFHRWPGLAATLL HHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCHHHHHH PEALGPVQVSGRLGLSRYATVNGDTGATFTAGDPGATRGFVTTSREGVSRLDARAELAAP HHHCCCEEECCCCCCEEEEEECCCCCCEEECCCCCCCCCEEEECHHHHHHHHHHHHHHHH LRLGSALTVTPYARGAALGYRFDTGRSPAVVAWGVGGAALSSEVSRRYGAVLHRIVPRLE HHCCCEEEECCCCCCCEEEEEECCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH LRAGTRAFGSEDGALPLRAYDVWDRVGDDVQRGPVSVAEPAGQPAGSLTAASDGTFRQLR HCCCCCCCCCCCCCCEEEHHHHHHHHCCHHHHCCCCCCCCCCCCCCCEEECCCCHHHHHH ASVESRLDGPGGSLRLQLGQDVDLVGGVAGETFFSAAAHRGPVTAEVSGRVLAFQGRAVA HHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEECCCEEEEEECCEEE APAPRFPSWLDHFTELHGAITAADRRGDLVRAGLVAVGPGASGQLMAGVDALFDLRPAAI CCCCCCHHHHHHHHHHHHHEEECCCCCCEEEECEEEECCCCCCCHHHHHHHHHHCCCHHC DASAQGSAGFRGVLGGATLGYDALFTVRPIEVARCSGAGTRRVDAGQVQQHAGSVTWNSP CCCCCCCCCCCEECCCCCCCCCEEEEECCEEEEECCCCCCCCCCHHHHHHHCCCCCCCCC CHCFLARLVVRVNDCGETSYSAAVDLSRLGERAAVR HHHHHHHHHHHHCCCCCCCHHHHHHHHHHCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA