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The map label for this gene is ydeB [H]

Identifier: 220917784

GI number: 220917784

Start: 2963518

End: 2964033

Strand: Reverse

Name: ydeB [H]

Synonym: A2cp1_2685

Alternate gene names: 220917784

Gene position: 2964033-2963518 (Counterclockwise)

Preceding gene: 220917788

Following gene: 220917783

Centisome position: 58.93

GC content: 63.37

Gene sequence:

>516_bases
ATGTCCGCAACGCAGGCTACTCAGGTCGCCCCGAATTTCAAGGTCGGGGACAAGGCCGTCTACCCCGGGCAGGGGGTCGG
CGAGGTCATGGGCATCGAGCACAAGGAGGTCGCCGGCCAGCGACAGTCGTTCTACGTGCTCCGCATCCTGGAGAACGGGA
TGAAGATCATGATCCCCATGAACAAGGTCGGCTCGGTCGGCCTGCGCGAGATCATCGGGGAGAAGGACGTCCGCCGCGTC
TACGGGATCCTCCGGGAGAAGGAGGTCTCGGTGGACTCCACCACCTGGAACCGCCGCTACCGGGAGTACATGGACAAGAT
CAAGACCGGCAGCGTGTTCGAGATCGCCGAGGTGCTGCGCGACCTCTACCTGCTCCGGTCGGACAAGGACCTCTCGTTCG
GCGAGCGGAAGATGCTCGACACCGCGCGCTCGCTCCTCATCAAGGAGCTCGCCATCGCGAAGGCGTGCGACGAGCAGGAC
GTCGAGGACGACCTGAAGAAGATCTTCAACTGCTGA

Upstream 100 bases:

>100_bases
CCGTGTCGGGGAGCTGTGGTAGTCTCCCGCGACTAAGCTCCCGCCCCGTAGTCGACCCGTCCGGTCGGCCATCGGCACCG
GCGGTGGAGCGGAGGAAGGA

Downstream 100 bases:

>100_bases
TCCCCCTCCGCGGGATCCGGGGCCGCCGCACGGACGGAAGTCCGCGCGGCGGTCGCGTCTCCGCGCGGATCGCTTGACGT
CTGGGCCCGGGTGCGGCACG

Product: CarD family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 171; Mature: 170

Protein sequence:

>171_residues
MSATQATQVAPNFKVGDKAVYPGQGVGEVMGIEHKEVAGQRQSFYVLRILENGMKIMIPMNKVGSVGLREIIGEKDVRRV
YGILREKEVSVDSTTWNRRYREYMDKIKTGSVFEIAEVLRDLYLLRSDKDLSFGERKMLDTARSLLIKELAIAKACDEQD
VEDDLKKIFNC

Sequences:

>Translated_171_residues
MSATQATQVAPNFKVGDKAVYPGQGVGEVMGIEHKEVAGQRQSFYVLRILENGMKIMIPMNKVGSVGLREIIGEKDVRRV
YGILREKEVSVDSTTWNRRYREYMDKIKTGSVFEIAEVLRDLYLLRSDKDLSFGERKMLDTARSLLIKELAIAKACDEQD
VEDDLKKIFNC
>Mature_170_residues
SATQATQVAPNFKVGDKAVYPGQGVGEVMGIEHKEVAGQRQSFYVLRILENGMKIMIPMNKVGSVGLREIIGEKDVRRVY
GILREKEVSVDSTTWNRRYREYMDKIKTGSVFEIAEVLRDLYLLRSDKDLSFGERKMLDTARSLLIKELAIAKACDEQDV
EDDLKKIFNC

Specific function: Unknown

COG id: COG1329

COG function: function code K; Transcriptional regulators, similar to M. xanthus CarD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003711 [H]

Pfam domain/function: PF02559 CarD_TRCF [H]

EC number: NA

Molecular weight: Translated: 19454; Mature: 19323

Theoretical pI: Translated: 8.17; Mature: 8.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSATQATQVAPNFKVGDKAVYPGQGVGEVMGIEHKEVAGQRQSFYVLRILENGMKIMIPM
CCCCCCHHCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHCCHHHHHHHHHHHCCCEEEEEC
NKVGSVGLREIIGEKDVRRVYGILREKEVSVDSTTWNRRYREYMDKIKTGSVFEIAEVLR
CHHCCHHHHHHHCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
DLYLLRSDKDLSFGERKMLDTARSLLIKELAIAKACDEQDVEDDLKKIFNC
HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCC
>Mature Secondary Structure 
SATQATQVAPNFKVGDKAVYPGQGVGEVMGIEHKEVAGQRQSFYVLRILENGMKIMIPM
CCCCCHHCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHCCHHHHHHHHHHHCCCEEEEEC
NKVGSVGLREIIGEKDVRRVYGILREKEVSVDSTTWNRRYREYMDKIKTGSVFEIAEVLR
CHHCCHHHHHHHCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
DLYLLRSDKDLSFGERKMLDTARSLLIKELAIAKACDEQDVEDDLKKIFNC
HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]