Click here to switch to the map view.

The map label for this gene is dedA [C]

Identifier: 220916719

GI number: 220916719

Start: 1801683

End: 1802357

Strand: Direct

Name: dedA [C]

Synonym: A2cp1_1613

Alternate gene names: 220916719

Gene position: 1801683-1802357 (Clockwise)

Preceding gene: 220916718

Following gene: 220916721

Centisome position: 35.82

GC content: 71.11

Gene sequence:

>675_bases
ATGCTCGAACGCCTGGTCGAGTTGCTCGGAGGGCACTCCCTCCACGTGGGATACGCGTTCGTCTTCGCCGTGCTGGTGCT
GTGCGGCTTCGGCCTGCCCATGCCCGAGGACGTGATCCTCGTCACGGGCGGCGTGCTCGCCTGGCTCGCGAGCGACCTCG
AGGCGGCCTCGTTCTCGGCGATGGTCCGGGACGACGGGCTGCTGTTCATGGTGGCGGTCGGGCTGGCGGGCATCCTGGCG
GGCGACTCGGTCATCTTCCTGGCCGGCCGCAAGTTCGGCGCCCGGGTGGCGGACTTCCGGCCGCTGCGCCGCATGATCAC
GCCCGAGAAGCTCGAGAAGGTCGAGAAGCTGATGCGCCGCCGGGGGAACGTGGTCGTGGTGGTGGCGCGGTACCTCCCGG
GCATCCGCATGCCGACCTACTTCACGGCCGGACACGCGGGCATGCCGTACTGGGAGTTCCTGCTGTTCGACGGCGCCGCG
GCGCTGGTCTCCGCGCCGCTCTGGGTGTGCCTGGGCTTCTACTTCGGGTCGAACATCGAGGAGGCCGCGCGCCTCGCCGC
CCGCTTCAGCCACTACATCCTGCTCGGCGTCGGGGTGGTCCTGCTCGGCCTGTTCCTGCGCTGGCTCCAGACGCGGCGGG
CGGTGCCCGCGTCGCCGGACGGCGACCGGGACTGA

Upstream 100 bases:

>100_bases
CCGGCGGGCGGGAGGCCTGCGCACGGGCGCACGTGCCGCGTGACCTCCGGGCGGACATGCGGTAAGCCGGGATCCCGGGA
AGGAGCGCGAGGCACCGCGG

Downstream 100 bases:

>100_bases
CAGCGCCGCCCATTCACGTGGAGCCCTGCTGCGGCGCACGCTGGCTGCCTGCGCCGGGCAGACTCGTCCCTGCGCTGCTC
GACGTGCCTAGGGGCACGCC

Product: DedA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MLERLVELLGGHSLHVGYAFVFAVLVLCGFGLPMPEDVILVTGGVLAWLASDLEAASFSAMVRDDGLLFMVAVGLAGILA
GDSVIFLAGRKFGARVADFRPLRRMITPEKLEKVEKLMRRRGNVVVVVARYLPGIRMPTYFTAGHAGMPYWEFLLFDGAA
ALVSAPLWVCLGFYFGSNIEEAARLAARFSHYILLGVGVVLLGLFLRWLQTRRAVPASPDGDRD

Sequences:

>Translated_224_residues
MLERLVELLGGHSLHVGYAFVFAVLVLCGFGLPMPEDVILVTGGVLAWLASDLEAASFSAMVRDDGLLFMVAVGLAGILA
GDSVIFLAGRKFGARVADFRPLRRMITPEKLEKVEKLMRRRGNVVVVVARYLPGIRMPTYFTAGHAGMPYWEFLLFDGAA
ALVSAPLWVCLGFYFGSNIEEAARLAARFSHYILLGVGVVLLGLFLRWLQTRRAVPASPDGDRD
>Mature_224_residues
MLERLVELLGGHSLHVGYAFVFAVLVLCGFGLPMPEDVILVTGGVLAWLASDLEAASFSAMVRDDGLLFMVAVGLAGILA
GDSVIFLAGRKFGARVADFRPLRRMITPEKLEKVEKLMRRRGNVVVVVARYLPGIRMPTYFTAGHAGMPYWEFLLFDGAA
ALVSAPLWVCLGFYFGSNIEEAARLAARFSHYILLGVGVVLLGLFLRWLQTRRAVPASPDGDRD

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI1788656, Length=178, Percent_Identity=27.5280898876405, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 24472; Mature: 24472

Theoretical pI: Translated: 8.69; Mature: 8.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLERLVELLGGHSLHVGYAFVFAVLVLCGFGLPMPEDVILVTGGVLAWLASDLEAASFSA
CHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHH
MVRDDGLLFMVAVGLAGILAGDSVIFLAGRKFGARVADFRPLRRMITPEKLEKVEKLMRR
HHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHH
RGNVVVVVARYLPGIRMPTYFTAGHAGMPYWEFLLFDGAAALVSAPLWVCLGFYFGSNIE
CCCEEEEHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
EAARLAARFSHYILLGVGVVLLGLFLRWLQTRRAVPASPDGDRD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MLERLVELLGGHSLHVGYAFVFAVLVLCGFGLPMPEDVILVTGGVLAWLASDLEAASFSA
CHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHH
MVRDDGLLFMVAVGLAGILAGDSVIFLAGRKFGARVADFRPLRRMITPEKLEKVEKLMRR
HHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHH
RGNVVVVVARYLPGIRMPTYFTAGHAGMPYWEFLLFDGAAALVSAPLWVCLGFYFGSNIE
CCCEEEEHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
EAARLAARFSHYILLGVGVVLLGLFLRWLQTRRAVPASPDGDRD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]