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The map label for this gene is rbcR [H]

Identifier: 220916622

GI number: 220916622

Start: 1695758

End: 1696660

Strand: Reverse

Name: rbcR [H]

Synonym: A2cp1_1516

Alternate gene names: 220916622

Gene position: 1696660-1695758 (Counterclockwise)

Preceding gene: 220916626

Following gene: 220916621

Centisome position: 33.74

GC content: 76.08

Gene sequence:

>903_bases
ATGGATCTCGCCCAGCTCGAGCTGCTCGCCGCGGTCGCGGAGGAGCGCAGCTTCACCCGCGCCGCGGAGCGGCTCCACCG
CACGCAGCCCGCCGTGAGCCAGGCCCTGCGCCGGCTGGAGGAGGAGGTCGGGGCGACGCTGGTGGACCGCTCGTCGCGAG
ACGCCAGCCTCACCGCCGAGGGAAAGGTGCTGCACGAGTACGCGCAGCGGATGCTGAAGCTCCGGCGCGACGCGGGCGAG
GCGCTCGAGGCGCTGCGCGGCCTCCAGCGCGGCACGGTGGTCGTCGCGGCGAACGAGTTCACCGCCACCCACCTGCTCCC
CGTGCTCGCCGAGTTCCGCCGGCGGCACCCCCACCTCCGCGTCGAGGTCCACCGCAGCCTGGCGCGCGACATCCCCACCG
CCGTGCTCGGGCGCGACGCCGAGCTCGGCGTGCTGACCTACCGGGCGACGCAGCCCGGGCTGGTCGCGCAGCAGATCGCC
ATCGACGACCTGGTGCTGCTCGTCCCGCCCGAGCACCCGCTCGCCCGCCGCGGCACCGTCTCGATCCGGCAGCTCGGCGG
CGAGTCGTTCCTGGCGCACCACGTCCGCTCGCCCAACCGCGAGCGGGTGGTGAAGGCGTTCGCGCGGCACAGGACGACGC
TCGACATCGTGATGGAGCTGCCCACGCTCGACGCGGTGAAGCGGCTGGTGGTGGAGCGGGTCGGCATCGCGCTCATGCCC
GCGCGCGTGGCCGAGCCCGAGCTCGCTCGCGGCGAGCTGGTCGGCCTGACCGTGCGCGAGATGCGCTTCCCGCGCCCGGT
GCTGCTCGTGCACCGCCGCGACGCCCCGCTCTCGCGCGCCGCCGAGGCGCTGCTCGAGTGCGCGCGGGAGGTCGCGCCGC
GCGGGGCCGCGCGGACCGGCTGA

Upstream 100 bases:

>100_bases
ACCCTAGCGACGCGCGGCCGCATAAGTCCAAGTGATTGTGGTGATGTAAGTATCACGTGTGTTGATATGCTCGCGCGCCC
GCCCCCCGGAGGACGTCCGC

Downstream 100 bases:

>100_bases
ACGGCGCGCCCGGCGCCGGGCGGTGACGACGGAGCTCCATCCCACCCGCCTCACGGCGCCGGCGGGGGGACGTCACGTTC
GCTCGGCGTCCCGGACCCTC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MDLAQLELLAAVAEERSFTRAAERLHRTQPAVSQALRRLEEEVGATLVDRSSRDASLTAEGKVLHEYAQRMLKLRRDAGE
ALEALRGLQRGTVVVAANEFTATHLLPVLAEFRRRHPHLRVEVHRSLARDIPTAVLGRDAELGVLTYRATQPGLVAQQIA
IDDLVLLVPPEHPLARRGTVSIRQLGGESFLAHHVRSPNRERVVKAFARHRTTLDIVMELPTLDAVKRLVVERVGIALMP
ARVAEPELARGELVGLTVREMRFPRPVLLVHRRDAPLSRAAEALLECAREVAPRGAARTG

Sequences:

>Translated_300_residues
MDLAQLELLAAVAEERSFTRAAERLHRTQPAVSQALRRLEEEVGATLVDRSSRDASLTAEGKVLHEYAQRMLKLRRDAGE
ALEALRGLQRGTVVVAANEFTATHLLPVLAEFRRRHPHLRVEVHRSLARDIPTAVLGRDAELGVLTYRATQPGLVAQQIA
IDDLVLLVPPEHPLARRGTVSIRQLGGESFLAHHVRSPNRERVVKAFARHRTTLDIVMELPTLDAVKRLVVERVGIALMP
ARVAEPELARGELVGLTVREMRFPRPVLLVHRRDAPLSRAAEALLECAREVAPRGAARTG
>Mature_300_residues
MDLAQLELLAAVAEERSFTRAAERLHRTQPAVSQALRRLEEEVGATLVDRSSRDASLTAEGKVLHEYAQRMLKLRRDAGE
ALEALRGLQRGTVVVAANEFTATHLLPVLAEFRRRHPHLRVEVHRSLARDIPTAVLGRDAELGVLTYRATQPGLVAQQIA
IDDLVLLVPPEHPLARRGTVSIRQLGGESFLAHHVRSPNRERVVKAFARHRTTLDIVMELPTLDAVKRLVVERVGIALMP
ARVAEPELARGELVGLTVREMRFPRPVLLVHRRDAPLSRAAEALLECAREVAPRGAARTG

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcL and rbcS) expression [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=285, Percent_Identity=28.7719298245614, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI1788481, Length=296, Percent_Identity=30.0675675675676, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI145693105, Length=282, Percent_Identity=25.531914893617, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1788748, Length=295, Percent_Identity=30.1694915254237, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1790399, Length=297, Percent_Identity=26.2626262626263, Blast_Score=91, Evalue=9e-20,
Organism=Escherichia coli, GI87082132, Length=295, Percent_Identity=26.4406779661017, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1788887, Length=248, Percent_Identity=29.8387096774194, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1787879, Length=290, Percent_Identity=26.8965517241379, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1788296, Length=243, Percent_Identity=27.5720164609054, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI87081904, Length=296, Percent_Identity=25.6756756756757, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1790208, Length=304, Percent_Identity=26.9736842105263, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1787589, Length=261, Percent_Identity=27.9693486590038, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1789204, Length=287, Percent_Identity=25.7839721254355, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787806, Length=288, Percent_Identity=25, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1787530, Length=265, Percent_Identity=24.1509433962264, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1789639, Length=274, Percent_Identity=28.4671532846715, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788297, Length=246, Percent_Identity=23.5772357723577, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786401, Length=302, Percent_Identity=25.1655629139073, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI2367136, Length=198, Percent_Identity=31.8181818181818, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1786713, Length=283, Percent_Identity=25.0883392226148, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1790262, Length=266, Percent_Identity=24.0601503759398, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1787601, Length=279, Percent_Identity=23.6559139784946, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1789173, Length=182, Percent_Identity=31.3186813186813, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33260; Mature: 33260

Theoretical pI: Translated: 11.09; Mature: 11.09

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLAQLELLAAVAEERSFTRAAERLHRTQPAVSQALRRLEEEVGATLVDRSSRDASLTAE
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCC
GKVLHEYAQRMLKLRRDAGEALEALRGLQRGTVVVAANEFTATHLLPVLAEFRRRHPHLR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCCCEE
VEVHRSLARDIPTAVLGRDAELGVLTYRATQPGLVAQQIAIDDLVLLVPPEHPLARRGTV
HHHHHHHHHHCCHHHHCCCCCCEEEEEECCCCCHHHHHHHHCCEEEEECCCCCCCCCCCH
SIRQLGGESFLAHHVRSPNRERVVKAFARHRTTLDIVMELPTLDAVKRLVVERVGIALMP
HHHHHCCHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHCHHHCC
ARVAEPELARGELVGLTVREMRFPRPVLLVHRRDAPLSRAAEALLECAREVAPRGAARTG
CCCCCCCCCCCCEEEEEHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MDLAQLELLAAVAEERSFTRAAERLHRTQPAVSQALRRLEEEVGATLVDRSSRDASLTAE
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCC
GKVLHEYAQRMLKLRRDAGEALEALRGLQRGTVVVAANEFTATHLLPVLAEFRRRHPHLR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCCCEE
VEVHRSLARDIPTAVLGRDAELGVLTYRATQPGLVAQQIAIDDLVLLVPPEHPLARRGTV
HHHHHHHHHHCCHHHHCCCCCCEEEEEECCCCCHHHHHHHHCCEEEEECCCCCCCCCCCH
SIRQLGGESFLAHHVRSPNRERVVKAFARHRTTLDIVMELPTLDAVKRLVVERVGIALMP
HHHHHCCHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHCHHHCC
ARVAEPELARGELVGLTVREMRFPRPVLLVHRRDAPLSRAAEALLECAREVAPRGAARTG
CCCCCCCCCCCCEEEEEHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA