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The map label for this gene is soxA [H]

Identifier: 220916582

GI number: 220916582

Start: 1646922

End: 1648211

Strand: Reverse

Name: soxA [H]

Synonym: A2cp1_1476

Alternate gene names: 220916582

Gene position: 1648211-1646922 (Counterclockwise)

Preceding gene: 220916584

Following gene: 220916581

Centisome position: 32.77

GC content: 82.48

Gene sequence:

>1290_bases
ATGCCCAGACTCCCGGACTTCCCCGCCGACTGCACCATCACCTTCGACGGCCGCGCCGTACCGGCGCGCCGCGGCGAGTC
GATCGCCTCGGCGCTGCTCGCGGACGGGCGGCCGCTCCTGGCGCGCAGCGCCAAGTACCACCGCCCGCGCGGCCCGTTCT
GCCTGGCCGGCTCCTGCGGCAGCTGCCTGGTGCGGGTGGACGGGCTGCCCGACCAGCGCGCCTGCCGCACCGCGTGCGCC
GACGGCCTCACGGTCGAGACGCAGAACGCGCTCCCCGACGCGGCGCACGACCTGCTCGGCGTCATCGACCGCGCGTTCCC
GCACGGCCTCGACCACCACCACCTCGCCACCTGGAACCCGCTCGCGAACCGCGCCGCGGTGGCGTTCTCGCGCCAGCTCG
CCGGCCTGGGGAAGCTCCCCGGCCCGGAGCGCGCCGCGGGGCCGCTCCCGCCCGCGCCGCGCGAGGAGGCGTTCGACGCG
CTGGTGGTGGGGGCCGGGCCGGCGGGGCTCGCCGCGGCGGAGGCGCTGGCCGGGGCCGGGCGGCGCGTGCTGCTCGCCGA
CGCCGAGCCGGCGCCGGGCGGCCGGCTGCGCTGCCGCCTCGAGCTCCCCGGCGATCCGCCGCTGGCGTGGGCGTCGGCGG
CGGCCGCGCGCGTCGCGGCGGCCGGCGGCGAGGTGGCCTCCGCCACGACGGTGCTCGGGCTCTGGCGCGACGGCGGCGCC
CCGCTCGCCGCGCTCGCGCCCGCCTCCGGCGCGCTGCGCCTGGTGCGGCCGGCGGCGATCCTGATCTGCGCCGGCGGGCA
CCCGCAGCCGCCCGGGCTGGAGGACGACGACCGGCCCGGCGTCGTCGCCGGCCGCGGGCTGGCGCGCGCGCTCGCCGAGC
ACGGCGTGGTGCCGGGGCGGCGCGCGGTGGTGCTGGGCGGCGGGCCCGAGCCGGAGGCGCTCGCGGCGCGGCTCGCCGCG
GCGGGCGTGGAGGTGGAGCGGGTGGAGGCGGCGGAGGGACGCGTCCTCGGACGGGCCCGGGTGCGCGGCCTCGCGCTCGC
GGACGGCCGCCGGGTGCGCTGCGACGTGCTGGCCGTGGCGACGCCGCCGGCGCCCGCGACCGAGCTGGCGCGGTCGATGG
GGGCGCCGGTGGCGCTCGACCCGGCGCTGGGCGCGTTCGCGCTCCAGGTGGACGGGCGGGGCCACACGGGGGTCCCGGGG
CTCCTCGCCGCGGGCGAGGTGACCGGGGCGATGGACGCGGCGCGCGCGGCCGAGGCCGGGCGGCGCGCGGGGGAGGCGGC
CCGTGGGTAA

Upstream 100 bases:

>100_bases
CCCCACCCGCCGCGCTCCGGACGCCCCGCCGCCCCCCGAGACGCGGAGTCGCTCCGGCGCTATCCTCCGGCCGCCTTCCG
GACCCCCGAGCGCGCGCACC

Downstream 100 bases:

>100_bases
GCGGCTGGTGTGCGCGTGCGAGGACGTGTCGCTGGAGGAGGTGCGCCGCGCGTTCGCGGCGGGCCACCGCGACCTCGAGT
CGGTGAAGCGGGTCACCGGG

Product: FAD-dependent pyridine nucleotide-disulfide oxidoreductase

Products: NA

Alternate protein names: Sarcosine oxidase subunit [H]

Number of amino acids: Translated: 429; Mature: 428

Protein sequence:

>429_residues
MPRLPDFPADCTITFDGRAVPARRGESIASALLADGRPLLARSAKYHRPRGPFCLAGSCGSCLVRVDGLPDQRACRTACA
DGLTVETQNALPDAAHDLLGVIDRAFPHGLDHHHLATWNPLANRAAVAFSRQLAGLGKLPGPERAAGPLPPAPREEAFDA
LVVGAGPAGLAAAEALAGAGRRVLLADAEPAPGGRLRCRLELPGDPPLAWASAAAARVAAAGGEVASATTVLGLWRDGGA
PLAALAPASGALRLVRPAAILICAGGHPQPPGLEDDDRPGVVAGRGLARALAEHGVVPGRRAVVLGGGPEPEALAARLAA
AGVEVERVEAAEGRVLGRARVRGLALADGRRVRCDVLAVATPPAPATELARSMGAPVALDPALGAFALQVDGRGHTGVPG
LLAAGEVTGAMDAARAAEAGRRAGEAARG

Sequences:

>Translated_429_residues
MPRLPDFPADCTITFDGRAVPARRGESIASALLADGRPLLARSAKYHRPRGPFCLAGSCGSCLVRVDGLPDQRACRTACA
DGLTVETQNALPDAAHDLLGVIDRAFPHGLDHHHLATWNPLANRAAVAFSRQLAGLGKLPGPERAAGPLPPAPREEAFDA
LVVGAGPAGLAAAEALAGAGRRVLLADAEPAPGGRLRCRLELPGDPPLAWASAAAARVAAAGGEVASATTVLGLWRDGGA
PLAALAPASGALRLVRPAAILICAGGHPQPPGLEDDDRPGVVAGRGLARALAEHGVVPGRRAVVLGGGPEPEALAARLAA
AGVEVERVEAAEGRVLGRARVRGLALADGRRVRCDVLAVATPPAPATELARSMGAPVALDPALGAFALQVDGRGHTGVPG
LLAAGEVTGAMDAARAAEAGRRAGEAARG
>Mature_428_residues
PRLPDFPADCTITFDGRAVPARRGESIASALLADGRPLLARSAKYHRPRGPFCLAGSCGSCLVRVDGLPDQRACRTACAD
GLTVETQNALPDAAHDLLGVIDRAFPHGLDHHHLATWNPLANRAAVAFSRQLAGLGKLPGPERAAGPLPPAPREEAFDAL
VVGAGPAGLAAAEALAGAGRRVLLADAEPAPGGRLRCRLELPGDPPLAWASAAAARVAAAGGEVASATTVLGLWRDGGAP
LAALAPASGALRLVRPAAILICAGGHPQPPGLEDDDRPGVVAGRGLARALAEHGVVPGRRAVVLGGGPEPEALAARLAAA
GVEVERVEAAEGRVLGRARVRGLALADGRRVRCDVLAVATPPAPATELARSMGAPVALDPALGAFALQVDGRGHTGVPGL
LAAGEVTGAMDAARAAEAGRRAGEAARG

Specific function: Catalyzes the oxidative demethylation of sarcosine to yield glycine, hydrogen peroxide and 5,10- methylenetetrahydrofolate [H]

COG id: COG0446

COG function: function code R; Uncharacterized NAD(FAD)-dependent dehydrogenases

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gcvT family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013027
- InterPro:   IPR013977
- InterPro:   IPR006222
- InterPro:   IPR006277 [H]

Pfam domain/function: PF01571 GCV_T; PF08669 GCV_T_C; PF07992 Pyr_redox_2 [H]

EC number: =1.5.3.1 [H]

Molecular weight: Translated: 43125; Mature: 42994

Theoretical pI: Translated: 8.18; Mature: 8.18

Prosite motif: PS00197 2FE2S_FER_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRLPDFPADCTITFDGRAVPARRGESIASALLADGRPLLARSAKYHRPRGPFCLAGSCG
CCCCCCCCCCEEEEECCEECCCCCCHHHHHHHHHCCCHHHHCCCCCCCCCCCEEECCCCC
SCLVRVDGLPDQRACRTACADGLTVETQNALPDAAHDLLGVIDRAFPHGLDHHHLATWNP
CEEEEECCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCH
LANRAAVAFSRQLAGLGKLPGPERAAGPLPPAPREEAFDALVVGAGPAGLAAAEALAGAG
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHCCEEEECCCCHHHHHHHHHHCCC
RRVLLADAEPAPGGRLRCRLELPGDPPLAWASAAAARVAAAGGEVASATTVLGLWRDGGA
CEEEEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHEEEEEEECCCCC
PLAALAPASGALRLVRPAAILICAGGHPQPPGLEDDDRPGVVAGRGLARALAEHGVVPGR
CEEEECCCCCCEEEECCEEEEEECCCCCCCCCCCCCCCCCEEECHHHHHHHHHHCCCCCC
RAVVLGGGPEPEALAARLAAAGVEVERVEAAEGRVLGRARVRGLALADGRRVRCDVLAVA
EEEEECCCCCHHHHHHHHHHCCCCCEEEHHHCCCEEEHHHHCEEEECCCCEEEEEEEEEE
TPPAPATELARSMGAPVALDPALGAFALQVDGRGHTGVPGLLAAGEVTGAMDAARAAEAG
CCCCCHHHHHHHHCCCEEECCCCCEEEEEECCCCCCCCCCCEECCCHHHHHHHHHHHHHH
RRAGEAARG
HHCCCCCCC
>Mature Secondary Structure 
PRLPDFPADCTITFDGRAVPARRGESIASALLADGRPLLARSAKYHRPRGPFCLAGSCG
CCCCCCCCCEEEEECCEECCCCCCHHHHHHHHHCCCHHHHCCCCCCCCCCCEEECCCCC
SCLVRVDGLPDQRACRTACADGLTVETQNALPDAAHDLLGVIDRAFPHGLDHHHLATWNP
CEEEEECCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCH
LANRAAVAFSRQLAGLGKLPGPERAAGPLPPAPREEAFDALVVGAGPAGLAAAEALAGAG
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHCCEEEECCCCHHHHHHHHHHCCC
RRVLLADAEPAPGGRLRCRLELPGDPPLAWASAAAARVAAAGGEVASATTVLGLWRDGGA
CEEEEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHEEEEEEECCCCC
PLAALAPASGALRLVRPAAILICAGGHPQPPGLEDDDRPGVVAGRGLARALAEHGVVPGR
CEEEECCCCCCEEEECCEEEEEECCCCCCCCCCCCCCCCCEEECHHHHHHHHHHCCCCCC
RAVVLGGGPEPEALAARLAAAGVEVERVEAAEGRVLGRARVRGLALADGRRVRCDVLAVA
EEEEECCCCCHHHHHHHHHHCCCCCEEEHHHCCCEEEHHHHCEEEECCCCEEEEEEEEEE
TPPAPATELARSMGAPVALDPALGAFALQVDGRGHTGVPGLLAAGEVTGAMDAARAAEAG
CCCCCHHHHHHHHCCCEEECCCCCEEEEEECCCCCCCCCCCEECCCHHHHHHHHHHHHHH
RRAGEAARG
HHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]