Definition | Anaeromyxobacter dehalogenans 2CP-1 chromosome, complete genome. |
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Accession | NC_011891 |
Length | 5,029,329 |
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The map label for this gene is yheS [H]
Identifier: 220915994
GI number: 220915994
Start: 996555
End: 998576
Strand: Reverse
Name: yheS [H]
Synonym: A2cp1_0880
Alternate gene names: 220915994
Gene position: 998576-996555 (Counterclockwise)
Preceding gene: 220915995
Following gene: 220915991
Centisome position: 19.86
GC content: 74.73
Gene sequence:
>2022_bases GTGAGCCTCGTCTCCGCCAGCCGGCTGTCGCTCGCGTACGGCCCCAAGGTCCTGTTCGACCGCGCCGCCTTCTCCATCGG GCCGCACGATCGCATCGGGCTGGTGGGCGCGAACGGCACCGGCAAGTCCTCGCTGCTGCGCATCCTGGCCGGCCAGATCG CGGCGGACGAGGGGGACCTGGTGTTCCGCCGCGGCGCGCGGGTGGGCTACCTGCCGCAGGACGTGTCGGAGCTGGCGGAC CTGCCGCTGGTCGACGCGGTGCTCGCCACCGTGCCCGGGCGCGCCGCGCTCGAGGACCGGCTGGCCGGCGCCGAGGCCGC GCTCGCCGCGGCGGCCACGGCCGAGGAGCAGCTCGAGCAGTCGCAGGCGCTCGCCGAGCTGCACGAGGAGCTGGACCACT TCGAGGAGCACTACGGCCGGCGCCGGGCCGAGCGGATCCTCTCGGGCCTGGGCTTCCGGCCCGGCGACCTGGACCGCCCC GCCCGCACCTTCTCCGGCGGCTGGAAGATGCGCGCGGCGCTGGCCGGGCTCCTGCTGCAGGCCCCCGACCTGCTGCTGCT CGACGAGCCCACCAACCACCTCGACGTGCCGACGCTCACCTGGTTCGACGCGTTCCTGCGCGGCACGCGCAAGGCGGTGG TGCTCATCTCGCACGACCGCGACTTCCTGAACCGGCAGATCGACCGGGTGCTGGCGCTCGAGCCGGAGGGGCTGCGCGCG TACGCCGGGAACCACGACGACTACCGCCGCCAGCGGGCCGAGGAGGAGGAGCGGCTGCTCGCGCAGGCGGAGCGGCAGGA GGCGAAGCGCGCCCAGCTCGAGGCCTTCATCGAGCGGTTCGGCGCGAAGGCCACCAAGGCGCGGCAGGCGAAGTCGAAGG AGAAGCTGCTCGAGAAGATGGAGGAGGTGCAGGTCCTCGAGCACCGCGCCACGCTGCGCTTCCGGTTCGCCGAGGCGCCG CGCTCCGGGCGCGAGGTGCTGCGGCTCGAGGGCGTGCGCAAGGCGTTCGGGCCGCGGGTGGTCTACCGCTCGCTCGACGC GGCCATCCAGCGCGGCGAGCGGGTGGGCGTGATCGGGCCGAACGGCGCGGGCAAGTCCACGCTGCTGAAGCTGGTGGCGG GCGAGCTCGCGCCGGACGGCGGCGAGGTGAAGCTCGGCCACGGCGTGCTCGCCGGCTACTACGCCCAGCACCACTTCGAG CGGCCCGAGCACCCGGAGGACGCCGCCGGCGCCATGCGCACGTTCGGCACGCTCGACCCGGACCGCACCGTGCTCGACAC GCTCTGGGACCTCGTGCCGGACCGCGGCGAGGCCTACGTGCGCAGCGTGGCCGGGTCGTTCCTGTTCTCCGGCGACGACG TGGAGAAGCGGGTGGGCGTGCTCTCCGGCGGGGAGCGCGCGCGGGTGGCGCTCGCGAAGCTCCTGCTCGTGCCGGCGAAC CTGCTGGTCCTCGACGAGCCCACCAACCACCTCGACCTCGACTCCTCCGAGGCGCTCATCGACGCGCTGAAGGGCTACGA CGGGACGCTCCTGTTCGTCTCGCACAACCGGAGCTTCCTGAACCAGCTCGCCACGGTGATCTGGGAGGTGAAGGACGGCG GGATCGTCCCCTGCCCGGGCAACCTCGACGACTGGCTGTACCACCAGCGCCAGCTCGAGGCGGCCGGCGCCGCCGACGGC GCCCCCGGGGCGGCGGGCGGCAAGGGCGGCGACGGGGCCGCGCGGGCCGCGCCGGCCAGCGAGAAGGAGCGGCGCCGCGC CGAGGCGGAGGCGCGCAACGCGCGCGCCCGCCGCGAGAAGCCGGTCCGCGACGAGATCGCCCGCCTCGAGGCGCGCATCG CCGAGCTGGAGCAGGACGAGAAGGAGACCACCGCCCGGCTCGCCGATCCGGCGCTGTACCAGGACTTCGCGCAGGCGAAG CCGCTCATCGAGCGGCAGGCCGCCGCCCGGTCCGAGCTGGAGACGCGCTACGCCGAGTGGGAAGCCGCCCAGGAGCGGCT CCAGGCGATGCAGGAGGGCTGA
Upstream 100 bases:
>100_bases CGGCGGTCCGCTTCGAGTACCCGTACATGCGCGAGAGGTAGCGCGGCGCGGACCGGCCGGGCTTGTCCCGGCGCCGGCTT CGGGCTACTTCCTCGCCCCC
Downstream 100 bases:
>100_bases GCCGGAGACGGCGAAACCCCGCCCGCCCGCGGGCGCGCGGGCGAGCGGGGCGCAGGGAACCCCGTGATCCGTCGGGCTAC TGCTTCGCCGCGGCGAGCGC
Product: ABC transporter-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 673; Mature: 672
Protein sequence:
>673_residues MSLVSASRLSLAYGPKVLFDRAAFSIGPHDRIGLVGANGTGKSSLLRILAGQIAADEGDLVFRRGARVGYLPQDVSELAD LPLVDAVLATVPGRAALEDRLAGAEAALAAAATAEEQLEQSQALAELHEELDHFEEHYGRRRAERILSGLGFRPGDLDRP ARTFSGGWKMRAALAGLLLQAPDLLLLDEPTNHLDVPTLTWFDAFLRGTRKAVVLISHDRDFLNRQIDRVLALEPEGLRA YAGNHDDYRRQRAEEEERLLAQAERQEAKRAQLEAFIERFGAKATKARQAKSKEKLLEKMEEVQVLEHRATLRFRFAEAP RSGREVLRLEGVRKAFGPRVVYRSLDAAIQRGERVGVIGPNGAGKSTLLKLVAGELAPDGGEVKLGHGVLAGYYAQHHFE RPEHPEDAAGAMRTFGTLDPDRTVLDTLWDLVPDRGEAYVRSVAGSFLFSGDDVEKRVGVLSGGERARVALAKLLLVPAN LLVLDEPTNHLDLDSSEALIDALKGYDGTLLFVSHNRSFLNQLATVIWEVKDGGIVPCPGNLDDWLYHQRQLEAAGAADG APGAAGGKGGDGAARAAPASEKERRRAEAEARNARARREKPVRDEIARLEARIAELEQDEKETTARLADPALYQDFAQAK PLIERQAAARSELETRYAEWEAAQERLQAMQEG
Sequences:
>Translated_673_residues MSLVSASRLSLAYGPKVLFDRAAFSIGPHDRIGLVGANGTGKSSLLRILAGQIAADEGDLVFRRGARVGYLPQDVSELAD LPLVDAVLATVPGRAALEDRLAGAEAALAAAATAEEQLEQSQALAELHEELDHFEEHYGRRRAERILSGLGFRPGDLDRP ARTFSGGWKMRAALAGLLLQAPDLLLLDEPTNHLDVPTLTWFDAFLRGTRKAVVLISHDRDFLNRQIDRVLALEPEGLRA YAGNHDDYRRQRAEEEERLLAQAERQEAKRAQLEAFIERFGAKATKARQAKSKEKLLEKMEEVQVLEHRATLRFRFAEAP RSGREVLRLEGVRKAFGPRVVYRSLDAAIQRGERVGVIGPNGAGKSTLLKLVAGELAPDGGEVKLGHGVLAGYYAQHHFE RPEHPEDAAGAMRTFGTLDPDRTVLDTLWDLVPDRGEAYVRSVAGSFLFSGDDVEKRVGVLSGGERARVALAKLLLVPAN LLVLDEPTNHLDLDSSEALIDALKGYDGTLLFVSHNRSFLNQLATVIWEVKDGGIVPCPGNLDDWLYHQRQLEAAGAADG APGAAGGKGGDGAARAAPASEKERRRAEAEARNARARREKPVRDEIARLEARIAELEQDEKETTARLADPALYQDFAQAK PLIERQAAARSELETRYAEWEAAQERLQAMQEG >Mature_672_residues SLVSASRLSLAYGPKVLFDRAAFSIGPHDRIGLVGANGTGKSSLLRILAGQIAADEGDLVFRRGARVGYLPQDVSELADL PLVDAVLATVPGRAALEDRLAGAEAALAAAATAEEQLEQSQALAELHEELDHFEEHYGRRRAERILSGLGFRPGDLDRPA RTFSGGWKMRAALAGLLLQAPDLLLLDEPTNHLDVPTLTWFDAFLRGTRKAVVLISHDRDFLNRQIDRVLALEPEGLRAY AGNHDDYRRQRAEEEERLLAQAERQEAKRAQLEAFIERFGAKATKARQAKSKEKLLEKMEEVQVLEHRATLRFRFAEAPR SGREVLRLEGVRKAFGPRVVYRSLDAAIQRGERVGVIGPNGAGKSTLLKLVAGELAPDGGEVKLGHGVLAGYYAQHHFER PEHPEDAAGAMRTFGTLDPDRTVLDTLWDLVPDRGEAYVRSVAGSFLFSGDDVEKRVGVLSGGERARVALAKLLLVPANL LVLDEPTNHLDLDSSEALIDALKGYDGTLLFVSHNRSFLNQLATVIWEVKDGGIVPCPGNLDDWLYHQRQLEAAGAADGA PGAAGGKGGDGAARAAPASEKERRRAEAEARNARARREKPVRDEIARLEARIAELEQDEKETTARLADPALYQDFAQAKP LIERQAAARSELETRYAEWEAAQERLQAMQEG
Specific function: Unknown
COG id: COG0488
COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Homo sapiens, GI148612853, Length=549, Percent_Identity=33.3333333333333, Blast_Score=282, Evalue=6e-76, Organism=Homo sapiens, GI10947137, Length=550, Percent_Identity=33.4545454545455, Blast_Score=261, Evalue=2e-69, Organism=Homo sapiens, GI27881506, Length=550, Percent_Identity=33.4545454545455, Blast_Score=261, Evalue=2e-69, Organism=Homo sapiens, GI10947135, Length=581, Percent_Identity=32.3580034423408, Blast_Score=230, Evalue=3e-60, Organism=Homo sapiens, GI69354671, Length=581, Percent_Identity=32.3580034423408, Blast_Score=230, Evalue=3e-60, Organism=Escherichia coli, GI1789751, Length=676, Percent_Identity=36.9822485207101, Blast_Score=388, Evalue=1e-109, Organism=Escherichia coli, GI1787041, Length=548, Percent_Identity=35.7664233576642, Blast_Score=333, Evalue=3e-92, Organism=Escherichia coli, GI1787182, Length=686, Percent_Identity=30.7580174927114, Blast_Score=279, Evalue=4e-76, Organism=Escherichia coli, GI2367384, Length=546, Percent_Identity=34.4322344322344, Blast_Score=257, Evalue=2e-69, Organism=Escherichia coli, GI48995001, Length=227, Percent_Identity=28.1938325991189, Blast_Score=72, Evalue=2e-13, Organism=Escherichia coli, GI1789672, Length=222, Percent_Identity=27.027027027027, Blast_Score=71, Evalue=2e-13, Organism=Escherichia coli, GI48994997, Length=238, Percent_Identity=26.4705882352941, Blast_Score=67, Evalue=3e-12, Organism=Escherichia coli, GI1787164, Length=217, Percent_Identity=30.8755760368664, Blast_Score=67, Evalue=4e-12, Organism=Escherichia coli, GI87081834, Length=202, Percent_Identity=30.6930693069307, Blast_Score=63, Evalue=6e-11, Organism=Caenorhabditis elegans, GI17553372, Length=557, Percent_Identity=31.7773788150808, Blast_Score=270, Evalue=2e-72, Organism=Caenorhabditis elegans, GI17559834, Length=563, Percent_Identity=29.1296625222025, Blast_Score=243, Evalue=3e-64, Organism=Caenorhabditis elegans, GI17555318, Length=533, Percent_Identity=29.8311444652908, Blast_Score=236, Evalue=3e-62, Organism=Caenorhabditis elegans, GI71992285, Length=285, Percent_Identity=27.0175438596491, Blast_Score=67, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6320874, Length=540, Percent_Identity=31.2962962962963, Blast_Score=252, Evalue=1e-67, Organism=Saccharomyces cerevisiae, GI6321121, Length=568, Percent_Identity=30.4577464788732, Blast_Score=247, Evalue=6e-66, Organism=Saccharomyces cerevisiae, GI6324314, Length=409, Percent_Identity=26.8948655256724, Blast_Score=133, Evalue=9e-32, Organism=Saccharomyces cerevisiae, GI6323278, Length=403, Percent_Identity=26.302729528536, Blast_Score=132, Evalue=1e-31, Organism=Saccharomyces cerevisiae, GI6325030, Length=412, Percent_Identity=28.8834951456311, Blast_Score=130, Evalue=6e-31, Organism=Drosophila melanogaster, GI24666836, Length=545, Percent_Identity=33.5779816513761, Blast_Score=303, Evalue=2e-82, Organism=Drosophila melanogaster, GI24642252, Length=572, Percent_Identity=32.3426573426573, Blast_Score=267, Evalue=2e-71, Organism=Drosophila melanogaster, GI18859989, Length=572, Percent_Identity=32.3426573426573, Blast_Score=267, Evalue=2e-71, Organism=Drosophila melanogaster, GI24641342, Length=563, Percent_Identity=31.6163410301954, Blast_Score=253, Evalue=3e-67,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 73691; Mature: 73560
Theoretical pI: Translated: 5.72; Mature: 5.72
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 0.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLVSASRLSLAYGPKVLFDRAAFSIGPHDRIGLVGANGTGKSSLLRILAGQIAADEGDL CCCCCCHHHHHHCCCHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCE VFRRGARVGYLPQDVSELADLPLVDAVLATVPGRAALEDRLAGAEAALAAAATAEEQLEQ EEECCCCCCCCHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHH SQALAELHEELDHFEEHYGRRRAERILSGLGFRPGDLDRPARTFSGGWKMRAALAGLLLQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHC APDLLLLDEPTNHLDVPTLTWFDAFLRGTRKAVVLISHDRDFLNRQIDRVLALEPEGLRA CCCEEEECCCCCCCCCCHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHCCCCCCCHH YAGNHDDYRRQRAEEEERLLAQAERQEAKRAQLEAFIERFGAKATKARQAKSKEKLLEKM HCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH EEVQVLEHRATLRFRFAEAPRSGREVLRLEGVRKAFGPRVVYRSLDAAIQRGERVGVIGP HHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCEEEEECC NGAGKSTLLKLVAGELAPDGGEVKLGHGVLAGYYAQHHFERPEHPEDAAGAMRTFGTLDP CCCCHHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCC DRTVLDTLWDLVPDRGEAYVRSVAGSFLFSGDDVEKRVGVLSGGERARVALAKLLLVPAN CHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCC LLVLDEPTNHLDLDSSEALIDALKGYDGTLLFVSHNRSFLNQLATVIWEVKDGGIVPCPG EEEEECCCCCCCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHEEECCCCEECCCC NLDDWLYHQRQLEAAGAADGAPGAAGGKGGDGAARAAPASEKERRRAEAEARNARARREK CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC PVRDEIARLEARIAELEQDEKETTARLADPALYQDFAQAKPLIERQAAARSELETRYAEW CHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EAAQERLQAMQEG HHHHHHHHHHHCC >Mature Secondary Structure SLVSASRLSLAYGPKVLFDRAAFSIGPHDRIGLVGANGTGKSSLLRILAGQIAADEGDL CCCCCHHHHHHCCCHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCE VFRRGARVGYLPQDVSELADLPLVDAVLATVPGRAALEDRLAGAEAALAAAATAEEQLEQ EEECCCCCCCCHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHH SQALAELHEELDHFEEHYGRRRAERILSGLGFRPGDLDRPARTFSGGWKMRAALAGLLLQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHC APDLLLLDEPTNHLDVPTLTWFDAFLRGTRKAVVLISHDRDFLNRQIDRVLALEPEGLRA CCCEEEECCCCCCCCCCHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHCCCCCCCHH YAGNHDDYRRQRAEEEERLLAQAERQEAKRAQLEAFIERFGAKATKARQAKSKEKLLEKM HCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH EEVQVLEHRATLRFRFAEAPRSGREVLRLEGVRKAFGPRVVYRSLDAAIQRGERVGVIGP HHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCEEEEECC NGAGKSTLLKLVAGELAPDGGEVKLGHGVLAGYYAQHHFERPEHPEDAAGAMRTFGTLDP CCCCHHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCC DRTVLDTLWDLVPDRGEAYVRSVAGSFLFSGDDVEKRVGVLSGGERARVALAKLLLVPAN CHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCC LLVLDEPTNHLDLDSSEALIDALKGYDGTLLFVSHNRSFLNQLATVIWEVKDGGIVPCPG EEEEECCCCCCCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHEEECCCCEECCCC NLDDWLYHQRQLEAAGAADGAPGAAGGKGGDGAARAAPASEKERRRAEAEARNARARREK CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC PVRDEIARLEARIAELEQDEKETTARLADPALYQDFAQAKPLIERQAAARSELETRYAEW CHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EAAQERLQAMQEG HHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]