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The map label for this gene is ygeR [C]

Identifier: 220915917

GI number: 220915917

Start: 903450

End: 904328

Strand: Reverse

Name: ygeR [C]

Synonym: A2cp1_0803

Alternate gene names: 220915917

Gene position: 904328-903450 (Counterclockwise)

Preceding gene: 220915918

Following gene: 220915916

Centisome position: 17.98

GC content: 79.64

Gene sequence:

>879_bases
GTGATCCGCCGGGCGGCACTCGCCGCCGCGGCGCTCGCGCTCCTCACCGGCTGCCCCGCGAAGCCGCCGGTGATCCGCCC
CTCGCCGCCCGCGGCCCGGCCACTGCCCATCCCGCTCCAGGCGCCGGCCCGCCACGACGAGCCGGCGCTGGCCGGGATCG
TCCACGTGGTGCGGCGGGGCGAGACGCTGTACCGGATCGCCCGCGCGTACGGGATCGACCCGGCCGACCTGATGGAGACG
AACGGCATCGCCGATCCGCGCAACGTGGCCGTCGGGACGGAGCTGTTCGTGCCCGGCGCGAGCGCGCCCGCCGAGGTGAC
GCCCTACCCCGGCCCCATGCCCGCCGGCCCCGCTCCCGCGGCGCCCACCACGGCGAGGCCCTCCCCGGCGGTCGCGTCCG
CCGCGCCCGCGCCCGCCGCGGCGCGGGGCCCCGCCCCCGGCCGCGCCGAGATCGTGGCGGCCCCGCCGCGCGACGCCGAC
GACGGGCCGCCGGTCGTCCGCCAGGGCGCCCCGTCGCGCCTCGGCTGGCCGCTCAAGGGCGTGCTGTACGGGCGCTACGG
CGTCCGCGCCGGCCAGCGGCACGACGGCATCGACGTCGCGGCGCCGGAGGGGACCCCGGTGCTGGCCGCGGCGGACGGCA
GCGTCATCTACGCCGGCGAGCAGGCCGGCTACGGCGCGGTGGTGATCCTGCGCCACGACGGCGGGCTGGTGACGCTGTAC
GCGCACAACTCCGAGGTGCTGGTGAAGGAGGGCGCGCGGGTCGACCGCGGGCAGCCCATCGCGCGCGTGGGCCAGACCGG
CCGCACCACCGGCCCGCACCTGCACTTCGAGGTGCGCGAAGGCACGCGGCCGCGCAACCCGCTGCTCTTCCTCCCCTGA

Upstream 100 bases:

>100_bases
TCGCGGCGGTGACGCCGCTCCACCTCGACGGCACGCACGATCCGATGTTCCAGGAGCTCCGCAGCTGGACCGTGCCCGGC
TACGAGAAGGAGCCGGCCCC

Downstream 100 bases:

>100_bases
GGTCGGCGCGGATCCCGTGGTAAGGTGCGCCCCCATGATGGACGCCGTCCGCGCCAGGATCCGCGACGTTCCCGACTTCC
CGAAGAAGGGGATCGTCTTC

Product: peptidase M23

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MIRRAALAAAALALLTGCPAKPPVIRPSPPAARPLPIPLQAPARHDEPALAGIVHVVRRGETLYRIARAYGIDPADLMET
NGIADPRNVAVGTELFVPGASAPAEVTPYPGPMPAGPAPAAPTTARPSPAVASAAPAPAAARGPAPGRAEIVAAPPRDAD
DGPPVVRQGAPSRLGWPLKGVLYGRYGVRAGQRHDGIDVAAPEGTPVLAAADGSVIYAGEQAGYGAVVILRHDGGLVTLY
AHNSEVLVKEGARVDRGQPIARVGQTGRTTGPHLHFEVREGTRPRNPLLFLP

Sequences:

>Translated_292_residues
MIRRAALAAAALALLTGCPAKPPVIRPSPPAARPLPIPLQAPARHDEPALAGIVHVVRRGETLYRIARAYGIDPADLMET
NGIADPRNVAVGTELFVPGASAPAEVTPYPGPMPAGPAPAAPTTARPSPAVASAAPAPAAARGPAPGRAEIVAAPPRDAD
DGPPVVRQGAPSRLGWPLKGVLYGRYGVRAGQRHDGIDVAAPEGTPVLAAADGSVIYAGEQAGYGAVVILRHDGGLVTLY
AHNSEVLVKEGARVDRGQPIARVGQTGRTTGPHLHFEVREGTRPRNPLLFLP
>Mature_292_residues
MIRRAALAAAALALLTGCPAKPPVIRPSPPAARPLPIPLQAPARHDEPALAGIVHVVRRGETLYRIARAYGIDPADLMET
NGIADPRNVAVGTELFVPGASAPAEVTPYPGPMPAGPAPAAPTTARPSPAVASAAPAPAAARGPAPGRAEIVAAPPRDAD
DGPPVVRQGAPSRLGWPLKGVLYGRYGVRAGQRHDGIDVAAPEGTPVLAAADGSVIYAGEQAGYGAVVILRHDGGLVTLY
AHNSEVLVKEGARVDRGQPIARVGQTGRTTGPHLHFEVREGTRPRNPLLFLP

Specific function: Unknown

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87082174, Length=248, Percent_Identity=33.0645161290323, Blast_Score=118, Evalue=5e-28,
Organism=Escherichia coli, GI1789099, Length=267, Percent_Identity=31.0861423220974, Blast_Score=111, Evalue=6e-26,
Organism=Escherichia coli, GI87081989, Length=95, Percent_Identity=47.3684210526316, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI87082297, Length=114, Percent_Identity=42.9824561403509, Blast_Score=84, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 29990; Mature: 29990

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRRAALAAAALALLTGCPAKPPVIRPSPPAARPLPIPLQAPARHDEPALAGIVHVVRRG
CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
ETLYRIARAYGIDPADLMETNGIADPRNVAVGTELFVPGASAPAEVTPYPGPMPAGPAPA
HHHHHHHHHHCCCHHHHHHCCCCCCCCCEEECCEEEECCCCCCCCCCCCCCCCCCCCCCC
APTTARPSPAVASAAPAPAAARGPAPGRAEIVAAPPRDADDGPPVVRQGAPSRLGWPLKG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHCCCCCCCCCCHHE
VLYGRYGVRAGQRHDGIDVAAPEGTPVLAAADGSVIYAGEQAGYGAVVILRHDGGLVTLY
EEEECCCCCCCCCCCCCEEECCCCCEEEEECCCCEEEECCCCCCEEEEEEECCCCEEEEE
AHNSEVLVKEGARVDRGQPIARVGQTGRTTGPHLHFEVREGTRPRNPLLFLP
ECCCEEEEECCCCCCCCCCHHHHCCCCCCCCCEEEEEECCCCCCCCCEEECC
>Mature Secondary Structure
MIRRAALAAAALALLTGCPAKPPVIRPSPPAARPLPIPLQAPARHDEPALAGIVHVVRRG
CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
ETLYRIARAYGIDPADLMETNGIADPRNVAVGTELFVPGASAPAEVTPYPGPMPAGPAPA
HHHHHHHHHHCCCHHHHHHCCCCCCCCCEEECCEEEECCCCCCCCCCCCCCCCCCCCCCC
APTTARPSPAVASAAPAPAAARGPAPGRAEIVAAPPRDADDGPPVVRQGAPSRLGWPLKG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHCCCCCCCCCCHHE
VLYGRYGVRAGQRHDGIDVAAPEGTPVLAAADGSVIYAGEQAGYGAVVILRHDGGLVTLY
EEEECCCCCCCCCCCCCEEECCCCCEEEEECCCCEEEECCCCCCEEEEEEECCCCEEEEE
AHNSEVLVKEGARVDRGQPIARVGQTGRTTGPHLHFEVREGTRPRNPLLFLP
ECCCEEEEECCCCCCCCCCHHHHCCCCCCCCCEEEEEECCCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7959068; 10984043 [H]