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The map label for this gene is hrpB3 [H]

Identifier: 220915860

GI number: 220915860

Start: 836339

End: 837058

Strand: Reverse

Name: hrpB3 [H]

Synonym: A2cp1_0743

Alternate gene names: 220915860

Gene position: 837058-836339 (Counterclockwise)

Preceding gene: 220915861

Following gene: 220915859

Centisome position: 16.64

GC content: 81.11

Gene sequence:

>720_bases
ATGCGCCTCGCACCCCTCGCGCTCCCGCTCACCCTGGCGCTGGCCGGCTGCTCCGGCGAAGCGCTCCTGCACGGCCTCGA
CGAGCCGCAGGCGAACGACGTCCTCGTCGCGCTCGACGAGGGCGGGATCGCCGCGGAGAAGGCGCGCGAGGACGGCGCCG
ACGCCGGCTGGGAGGTGCGCGTCGCCGCGGCCGACGCCGTCCGCGCGCGGCGCGTGCTGGCCGAGCGCGATCTGCCCCGG
CAGCGCCCGGCCGGCTTCGACGCCGTGCTCGCGAAGGGCTCGATGGTCCCGACGGCCACGGAGGAGCACGCGCTGTACCT
CCACGCGCTCTCGGGCGAGCTCGCGCGCAGCATCGAGGCCATCGACGGCGTGGTGGGCGCGCGCGTGCACCTCGGCCTGC
CGCAGGCGGATCCGTTCCGGCCGGGCGAGCGGCCCGCGCCGCGCGCCGCGGTGCTGGTGCGGTGCCGCGCGGCGGCGTGC
GCCGCGGTGCGGGCGCTCGAGCCCGGGCTCCGGGCGCTGGTGGCCGGGGCCGCGGACGGGCTCGACGCCGCGGCGGTGTC
GGTGGTCTTCGCGGAGGCGCCGCAGACCACCGCGCCGCCTCCGCCACCCCGCCGCGGGCGCTCGCCGGTGCTGCTCGCGC
TCGCGGCCGCGGCCGGCGCGGCGGCGATCGCGGTGGGCGGCGGCGCGGGGGTGCGCTGGCGCCGGGGGAAGCCGTCGTGA

Upstream 100 bases:

>100_bases
GTACCGCACCGTCCAGACCGTGGACCTCGCCGCCAGGCTGGTCGAGCAGGGCGCCCAGGCCGTGAAGCAGGCGCTGAACA
CGCAGCTCTGAGGACCCGCC

Downstream 100 bases:

>100_bases
CCGGTGCGGACCGGCGGCTCGCCGCCGCCGCCGCCGCGCTCGCGCCCCGGCGCGCGCAGGCGCTCCTCGCCCGCGGCCCG
TCTCCCGCCGCCTCCGAGGA

Product: secretory protein YscJ/FliF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MRLAPLALPLTLALAGCSGEALLHGLDEPQANDVLVALDEGGIAAEKAREDGADAGWEVRVAAADAVRARRVLAERDLPR
QRPAGFDAVLAKGSMVPTATEEHALYLHALSGELARSIEAIDGVVGARVHLGLPQADPFRPGERPAPRAAVLVRCRAAAC
AAVRALEPGLRALVAGAADGLDAAAVSVVFAEAPQTTAPPPPPRRGRSPVLLALAAAAGAAAIAVGGGAGVRWRRGKPS

Sequences:

>Translated_239_residues
MRLAPLALPLTLALAGCSGEALLHGLDEPQANDVLVALDEGGIAAEKAREDGADAGWEVRVAAADAVRARRVLAERDLPR
QRPAGFDAVLAKGSMVPTATEEHALYLHALSGELARSIEAIDGVVGARVHLGLPQADPFRPGERPAPRAAVLVRCRAAAC
AAVRALEPGLRALVAGAADGLDAAAVSVVFAEAPQTTAPPPPPRRGRSPVLLALAAAAGAAAIAVGGGAGVRWRRGKPS
>Mature_239_residues
MRLAPLALPLTLALAGCSGEALLHGLDEPQANDVLVALDEGGIAAEKAREDGADAGWEVRVAAADAVRARRVLAERDLPR
QRPAGFDAVLAKGSMVPTATEEHALYLHALSGELARSIEAIDGVVGARVHLGLPQADPFRPGERPAPRAAVLVRCRAAAC
AAVRALEPGLRALVAGAADGLDAAAVSVVFAEAPQTTAPPPPPRRGRSPVLLALAAAAGAAAIAVGGGAGVRWRRGKPS

Specific function: Necessary for both basic pathogenicity and the induction of the hypersensitive response in resistant plants. Could be a part of a specific transport apparatus or a secretion apparatus that is required for pathogenicity. Hrp proteins may form a complex (tu

COG id: COG4669

COG function: function code U; Type III secretory pathway, lipoprotein EscJ

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yscJ lipoprotein family [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003282
- InterPro:   IPR006182 [H]

Pfam domain/function: PF01514 YscJ_FliF [H]

EC number: NA

Molecular weight: Translated: 24245; Mature: 24245

Theoretical pI: Translated: 8.10; Mature: 8.10

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLAPLALPLTLALAGCSGEALLHGLDEPQANDVLVALDEGGIAAEKAREDGADAGWEVR
CCCCCHHHEEHHEEECCCCHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHCCCCCCEEEE
VAAADAVRARRVLAERDLPRQRPAGFDAVLAKGSMVPTATEEHALYLHALSGELARSIEA
EEHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCCCCCEEEEEEHHHHHHHHHHH
IDGVVGARVHLGLPQADPFRPGERPAPRAAVLVRCRAAACAAVRALEPGLRALVAGAADG
HHHHHCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCC
LDAAAVSVVFAEAPQTTAPPPPPRRGRSPVLLALAAAAGAAAIAVGGGAGVRWRRGKPS
CHHHHHEEEEECCCCCCCCCCCCCCCCCCEEEEEEHHCCCEEEEECCCCCCEECCCCCC
>Mature Secondary Structure
MRLAPLALPLTLALAGCSGEALLHGLDEPQANDVLVALDEGGIAAEKAREDGADAGWEVR
CCCCCHHHEEHHEEECCCCHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHCCCCCCEEEE
VAAADAVRARRVLAERDLPRQRPAGFDAVLAKGSMVPTATEEHALYLHALSGELARSIEA
EEHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCCCCCEEEEEEHHHHHHHHHHH
IDGVVGARVHLGLPQADPFRPGERPAPRAAVLVRCRAAACAAVRALEPGLRALVAGAADG
HHHHHCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCC
LDAAAVSVVFAEAPQTTAPPPPPRRGRSPVLLALAAAAGAAAIAVGGGAGVRWRRGKPS
CHHHHHEEEEECCCCCCCCCCCCCCCCCCEEEEEEHHCCCEEEEECCCCCCEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1472717 [H]