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The map label for this gene is amyC [H]

Identifier: 220915668

GI number: 220915668

Start: 629118

End: 630731

Strand: Direct

Name: amyC [H]

Synonym: A2cp1_0549

Alternate gene names: 220915668

Gene position: 629118-630731 (Clockwise)

Preceding gene: 220915667

Following gene: 220915671

Centisome position: 12.51

GC content: 75.15

Gene sequence:

>1614_bases
ATGACGCCCGCGCGATCGCCACGCCGCACCCCGCTCGCCCTCCTCGCCGCGATCGCCCTGGCCGCGCTCGCCTGCGGCGG
CGGCTCCACCCCTCCGCCGCCGGTCGACGTCTCGCCGGTGCCCGCCGCCGATCCCGGCAGCGCGCTCCCCGACGGCTGGG
AGCGCGGCCCGTTCGCCGAGATCTACGTCCGCGGCTACCAGGACTCCGACGGCGACGGCGTCGGCGACCTGCGCGGGCTG
GCGAGCCGGCTCGACCACCTCGCCGACCTCGGCGTCCGCGGGATCTGGCTCATGCCGGTCACCGCCAGCCAGGACCACGA
TCACGGCTACGCGGTCGCCGACTACCGCGGCGTCGAGCCCGGCTACGGCACGCTCGAGGACCTCGACGCGCTCGTCGCGG
CCGCCCACGCGCGCGGCATCGGCGTGATCCTCGACTACGTGATGAACCACAGCGCGGCCACCAACCCGCTGTTCCTCAAC
TCCGCGGACGACAAGTCGAACCCTTACCGCGGCTGGTACGTGTGGAGGTCGTCGCAGCCGTCGGGCTGGTCGGTGTACGG
CGGCAACCCGTGGCGCCAGTCCGGCACCGGCTGGTACTACGCGCCGTTCGCCACGAACATGCCGGACTTCGACCTCGCGA
ACCCGGCGGTGGCCGCGTACCACGCCGACAGCCAGCGCTTCTGGCTGAACCGCGGCGTCGACGGGTTCCGGTTCGACGCG
GTGGGCATGCTGTACGAGAACGGACCCGGCGCCTGGAACGACCAGCCCGAGAACTACGTCCGGATGGCGGAGGTGCGGGC
GCTGCTCGACGGCTACGAGCGGCGCTTCATGGTGTGCGAGGGGCCGGACGACCCGGCCGGCTTCACCGCCGCCTGCGGCA
GCGCGTTCGCGTTCGGCCTCCAGTCCGACGTGATGGGCGCGGCGCGCGGGGACGCCGCCGCGGTGGCCCGGGTGGCGGCG
TACTTCGAGGACCCGGCCCGCCTCGCCGCGTCCACCCTGCTCTCCAACCACGACGCCTTCGCCGGCCAGCGCCCCTGGGA
TCAGCTCGGCGGCGACGAGGCGCGCTACCGCCTCGCGGCCGCGACGTACCTGCTGCTCCCCGGGATCCCGTTCGTCTACT
ACGGCGAGGAGATCGGCATGGGCGGCGCCGCCTCGCTCTCCGGCGACTGGCGGCTGCGCACGCCCATGAGCTGGACCGGC
GACGCGCGCACCGCCGGGTTCACCACCGGCAAGCCGTTCCGCGCGCTCTCCTCGAACGCGGCCACGCACAACGTGGAGGC
GGAGCAGGGCCGCGCCGGCTCGCTGCTCGAGTTCTACCGCGAGGTCATCGCGCTCCGCCGCGCGGTGCCGGCGCTCGACC
GCGGCGGCTACGAGGGCGCGCGCGCGTCCGGCGCGACGCTCTCGTTCCGCCGCACGCTGGGGACCTCGCACGCGCTCGTG
CTGCTCAACTACGACGTCGTCCCGCTCACGCTCCCCGTGACCGGCCTCCCGCCCGGCGCCGCGCTCGCGCCGCGCCTGCC
CGCCACCGCGCCCGCGGTCACGGCCGACGCGGCCGGCGCGGCCTCGTTCGACCTGCCCGCTCTCTCGGTCCGCGTCTACA
CCTGGGACGGCTGA

Upstream 100 bases:

>100_bases
GACCTCCGGGACGTTGACGCAGCTCCGCGTCCGCACGTAGAGAGCAGGGCGGCGCCCGCCGGACGCGCTCCCGCGCCCGG
CCGGTCCGCCGGAGGCGCCC

Downstream 100 bases:

>100_bases
GCTAGAACTCGCCCGCGATCCCGCCCGGCGACGGCATCAGGCGCACGTGGGCGATCGGGTGCCAGTGGAGCAGCGGCACC
AGGATCCCCACCGCCGTGCC

Product: alpha amylase catalytic subunit

Products: NA

Alternate protein names: 1,4-alpha-D-glucan glucanohydrolase [H]

Number of amino acids: Translated: 537; Mature: 536

Protein sequence:

>537_residues
MTPARSPRRTPLALLAAIALAALACGGGSTPPPPVDVSPVPAADPGSALPDGWERGPFAEIYVRGYQDSDGDGVGDLRGL
ASRLDHLADLGVRGIWLMPVTASQDHDHGYAVADYRGVEPGYGTLEDLDALVAAAHARGIGVILDYVMNHSAATNPLFLN
SADDKSNPYRGWYVWRSSQPSGWSVYGGNPWRQSGTGWYYAPFATNMPDFDLANPAVAAYHADSQRFWLNRGVDGFRFDA
VGMLYENGPGAWNDQPENYVRMAEVRALLDGYERRFMVCEGPDDPAGFTAACGSAFAFGLQSDVMGAARGDAAAVARVAA
YFEDPARLAASTLLSNHDAFAGQRPWDQLGGDEARYRLAAATYLLLPGIPFVYYGEEIGMGGAASLSGDWRLRTPMSWTG
DARTAGFTTGKPFRALSSNAATHNVEAEQGRAGSLLEFYREVIALRRAVPALDRGGYEGARASGATLSFRRTLGTSHALV
LLNYDVVPLTLPVTGLPPGAALAPRLPATAPAVTADAAGAASFDLPALSVRVYTWDG

Sequences:

>Translated_537_residues
MTPARSPRRTPLALLAAIALAALACGGGSTPPPPVDVSPVPAADPGSALPDGWERGPFAEIYVRGYQDSDGDGVGDLRGL
ASRLDHLADLGVRGIWLMPVTASQDHDHGYAVADYRGVEPGYGTLEDLDALVAAAHARGIGVILDYVMNHSAATNPLFLN
SADDKSNPYRGWYVWRSSQPSGWSVYGGNPWRQSGTGWYYAPFATNMPDFDLANPAVAAYHADSQRFWLNRGVDGFRFDA
VGMLYENGPGAWNDQPENYVRMAEVRALLDGYERRFMVCEGPDDPAGFTAACGSAFAFGLQSDVMGAARGDAAAVARVAA
YFEDPARLAASTLLSNHDAFAGQRPWDQLGGDEARYRLAAATYLLLPGIPFVYYGEEIGMGGAASLSGDWRLRTPMSWTG
DARTAGFTTGKPFRALSSNAATHNVEAEQGRAGSLLEFYREVIALRRAVPALDRGGYEGARASGATLSFRRTLGTSHALV
LLNYDVVPLTLPVTGLPPGAALAPRLPATAPAVTADAAGAASFDLPALSVRVYTWDG
>Mature_536_residues
TPARSPRRTPLALLAAIALAALACGGGSTPPPPVDVSPVPAADPGSALPDGWERGPFAEIYVRGYQDSDGDGVGDLRGLA
SRLDHLADLGVRGIWLMPVTASQDHDHGYAVADYRGVEPGYGTLEDLDALVAAAHARGIGVILDYVMNHSAATNPLFLNS
ADDKSNPYRGWYVWRSSQPSGWSVYGGNPWRQSGTGWYYAPFATNMPDFDLANPAVAAYHADSQRFWLNRGVDGFRFDAV
GMLYENGPGAWNDQPENYVRMAEVRALLDGYERRFMVCEGPDDPAGFTAACGSAFAFGLQSDVMGAARGDAAAVARVAAY
FEDPARLAASTLLSNHDAFAGQRPWDQLGGDEARYRLAAATYLLLPGIPFVYYGEEIGMGGAASLSGDWRLRTPMSWTGD
ARTAGFTTGKPFRALSSNAATHNVEAEQGRAGSLLEFYREVIALRRAVPALDRGGYEGARASGATLSFRRTLGTSHALVL
LNYDVVPLTLPVTGLPPGAALAPRLPATAPAVTADAAGAASFDLPALSVRVYTWDG

Specific function: Unknown

COG id: COG0366

COG function: function code G; Glycosidases

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 13 family [H]

Homologues:

Organism=Homo sapiens, GI187423904, Length=524, Percent_Identity=26.5267175572519, Blast_Score=172, Evalue=6e-43,
Organism=Escherichia coli, GI1790687, Length=509, Percent_Identity=32.2200392927308, Blast_Score=204, Evalue=1e-53,
Organism=Escherichia coli, GI1786604, Length=453, Percent_Identity=24.5033112582781, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1789995, Length=417, Percent_Identity=24.7002398081535, Blast_Score=65, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI25147709, Length=518, Percent_Identity=23.1660231660232, Blast_Score=97, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI32565753, Length=486, Percent_Identity=23.2510288065844, Blast_Score=89, Evalue=4e-18,
Organism=Saccharomyces cerevisiae, GI6321731, Length=563, Percent_Identity=26.8206039076377, Blast_Score=159, Evalue=9e-40,
Organism=Saccharomyces cerevisiae, GI6319776, Length=563, Percent_Identity=26.8206039076377, Blast_Score=159, Evalue=9e-40,
Organism=Saccharomyces cerevisiae, GI6322245, Length=495, Percent_Identity=27.2727272727273, Blast_Score=157, Evalue=3e-39,
Organism=Saccharomyces cerevisiae, GI6321726, Length=220, Percent_Identity=35.4545454545455, Blast_Score=142, Evalue=1e-34,
Organism=Saccharomyces cerevisiae, GI6322241, Length=220, Percent_Identity=35, Blast_Score=141, Evalue=3e-34,
Organism=Saccharomyces cerevisiae, GI6322021, Length=220, Percent_Identity=35, Blast_Score=141, Evalue=3e-34,
Organism=Saccharomyces cerevisiae, GI6324416, Length=220, Percent_Identity=35, Blast_Score=140, Evalue=5e-34,
Organism=Drosophila melanogaster, GI221330053, Length=548, Percent_Identity=29.3795620437956, Blast_Score=206, Evalue=4e-53,
Organism=Drosophila melanogaster, GI24586587, Length=505, Percent_Identity=29.9009900990099, Blast_Score=203, Evalue=3e-52,
Organism=Drosophila melanogaster, GI24583745, Length=501, Percent_Identity=29.7405189620758, Blast_Score=202, Evalue=6e-52,
Organism=Drosophila melanogaster, GI24586599, Length=555, Percent_Identity=28.4684684684685, Blast_Score=197, Evalue=2e-50,
Organism=Drosophila melanogaster, GI24586589, Length=515, Percent_Identity=30.4854368932039, Blast_Score=194, Evalue=1e-49,
Organism=Drosophila melanogaster, GI24586593, Length=570, Percent_Identity=29.6491228070175, Blast_Score=191, Evalue=1e-48,
Organism=Drosophila melanogaster, GI24586591, Length=502, Percent_Identity=29.8804780876494, Blast_Score=189, Evalue=4e-48,
Organism=Drosophila melanogaster, GI24586597, Length=556, Percent_Identity=27.158273381295, Blast_Score=185, Evalue=7e-47,
Organism=Drosophila melanogaster, GI24583747, Length=507, Percent_Identity=29.3885601577909, Blast_Score=177, Evalue=2e-44,
Organism=Drosophila melanogaster, GI24583749, Length=509, Percent_Identity=29.2730844793713, Blast_Score=176, Evalue=3e-44,
Organism=Drosophila melanogaster, GI45549022, Length=521, Percent_Identity=26.679462571977, Blast_Score=174, Evalue=2e-43,
Organism=Drosophila melanogaster, GI281360393, Length=476, Percent_Identity=27.9411764705882, Blast_Score=135, Evalue=5e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006046
- InterPro:   IPR013780
- InterPro:   IPR006047
- InterPro:   IPR006589
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF00128 Alpha-amylase [H]

EC number: =3.2.1.1 [H]

Molecular weight: Translated: 57011; Mature: 56880

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPARSPRRTPLALLAAIALAALACGGGSTPPPPVDVSPVPAADPGSALPDGWERGPFAE
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
IYVRGYQDSDGDGVGDLRGLASRLDHLADLGVRGIWLMPVTASQDHDHGYAVADYRGVEP
EEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEECCCCCCC
GYGTLEDLDALVAAAHARGIGVILDYVMNHSAATNPLFLNSADDKSNPYRGWYVWRSSQP
CCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCEEEEEECCCC
SGWSVYGGNPWRQSGTGWYYAPFATNMPDFDLANPAVAAYHADSQRFWLNRGVDGFRFDA
CCEEEECCCCCCCCCCCEEECCCCCCCCCCCCCCCEEEEEECCCCEEHHHCCCCCEEEEE
VGMLYENGPGAWNDQPENYVRMAEVRALLDGYERRFMVCEGPDDPAGFTAACGSAFAFGL
EEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHH
QSDVMGAARGDAAAVARVAAYFEDPARLAASTLLSNHDAFAGQRPWDQLGGDEARYRLAA
HHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCHHHHCCCHHHHHHHH
ATYLLLPGIPFVYYGEEIGMGGAASLSGDWRLRTPMSWTGDARTAGFTTGKPFRALSSNA
HHHHHHCCCCEEEECHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHCCCC
ATHNVEAEQGRAGSLLEFYREVIALRRAVPALDRGGYEGARASGATLSFRRTLGTSHALV
CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCEEEEHHHCCCCEEEE
LLNYDVVPLTLPVTGLPPGAALAPRLPATAPAVTADAAGAASFDLPALSVRVYTWDG
EEECCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECC
>Mature Secondary Structure 
TPARSPRRTPLALLAAIALAALACGGGSTPPPPVDVSPVPAADPGSALPDGWERGPFAE
CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
IYVRGYQDSDGDGVGDLRGLASRLDHLADLGVRGIWLMPVTASQDHDHGYAVADYRGVEP
EEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEECCCCCCC
GYGTLEDLDALVAAAHARGIGVILDYVMNHSAATNPLFLNSADDKSNPYRGWYVWRSSQP
CCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCEEEEEECCCC
SGWSVYGGNPWRQSGTGWYYAPFATNMPDFDLANPAVAAYHADSQRFWLNRGVDGFRFDA
CCEEEECCCCCCCCCCCEEECCCCCCCCCCCCCCCEEEEEECCCCEEHHHCCCCCEEEEE
VGMLYENGPGAWNDQPENYVRMAEVRALLDGYERRFMVCEGPDDPAGFTAACGSAFAFGL
EEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHH
QSDVMGAARGDAAAVARVAAYFEDPARLAASTLLSNHDAFAGQRPWDQLGGDEARYRLAA
HHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCHHHHCCCHHHHHHHH
ATYLLLPGIPFVYYGEEIGMGGAASLSGDWRLRTPMSWTGDARTAGFTTGKPFRALSSNA
HHHHHHCCCCEEEECHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHCCCC
ATHNVEAEQGRAGSLLEFYREVIALRRAVPALDRGGYEGARASGATLSFRRTLGTSHALV
CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCEEEEHHHCCCCEEEE
LLNYDVVPLTLPVTGLPPGAALAPRLPATAPAVTADAAGAASFDLPALSVRVYTWDG
EEECCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2458257 [H]